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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 267 |
| AccIII | TCCGGA | 1 cut(s) | 217 |
| AciI | CCGC | 4 cut(s) | 24, 133, 267, 530 |
| AclWI | GGATC | 2 cut(s) | 24, 61 |
| AcoI | YGGCCR | 1 cut(s) | 496 |
| AcsI | RAATTY | 1 cut(s) | 290 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AcyI | GRCGYC | 1 cut(s) | 355 |
| AfaI | GTAC | 1 cut(s) | 28 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 110, 224 |
| AgsI | TTSAA | 1 cut(s) | 211 |
| AhlI | ACTAGT | 1 cut(s) | 593 |
| AjnI | CCWGG | 1 cut(s) | 396 |
| AluBI | AGCT | 5 cut(s) | 110, 157, 223, 386, 440 |
| AluI | AGCT | 5 cut(s) | 110, 157, 223, 386, 440 |
| Alw26I | GTCTC | 1 cut(s) | 41 |
| AlwI | GGATC | 2 cut(s) | 24, 61 |
| Aor13HI | TCCGGA | 1 cut(s) | 217 |
| AoxI | GGCC | 1 cut(s) | 496 |
| ApeKI | GCWGC | 1 cut(s) | 479 |
| ApoI | RAATTY | 1 cut(s) | 290 |
| AspS9I | GGNCC | 4 cut(s) | 117, 135, 172, 394 |
| AsuHPI | GGTGA | 1 cut(s) | 502 |
| AvaII | GGWCC | 4 cut(s) | 117, 135, 172, 394 |
| BalI | TGGCCA | 1 cut(s) | 498 |
| BbsI | GAAGAC | 2 cut(s) | 157, 194 |
| BbvCI | CCTCAGC | 1 cut(s) | 483 |
| BbvI | GCAGC | 1 cut(s) | 466 |
| BccI | CCATC | 2 cut(s) | 139, 157 |
| BciT130I | CCWGG | 1 cut(s) | 398 |
| BcoDI | GTCTC | 1 cut(s) | 41 |
| BcuI | ACTAGT | 1 cut(s) | 593 |
| BfaI | CTAG | 3 cut(s) | 105, 336, 594 |
| BfmI | CTRYAG | 1 cut(s) | 387 |
| BisI | GCNGC | 2 cut(s) | 480, 531 |
| BlsI | GCNGC | 2 cut(s) | 481, 532 |
| Bme1390I | CCNGG | 1 cut(s) | 398 |
| Bme18I | GGWCC | 4 cut(s) | 117, 135, 172, 394 |
| BmgT120I | GGNCC | 4 cut(s) | 117, 135, 172, 394 |
| BmiI | GGNNCC | 5 cut(s) | 102, 118, 168, 534, 549 |
| BmrFI | CCNGG | 1 cut(s) | 398 |
| BmrI | ACTGGG | 1 cut(s) | 102 |
| BmuI | ACTGGG | 1 cut(s) | 102 |
| BpiI | GAAGAC | 2 cut(s) | 157, 194 |
| BpmI | CTGGAG | 1 cut(s) | 132 |
| Bpu10I | CCTNAGC | 1 cut(s) | 483 |
| BsaHI | GRCGYC | 1 cut(s) | 355 |
| BsaJI | CCNNGG | 2 cut(s) | 138, 499 |
| BsaWI | WCCGGW | 2 cut(s) | 217, 550 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 26, 212, 242 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 110, 224 |
| Bse118I | RCCGGY | 1 cut(s) | 169 |
| Bse1I | ACTGG | 5 cut(s) | 55, 97, 120, 251, 499 |
| BseAI | TCCGGA | 1 cut(s) | 217 |
| BseBI | CCWGG | 1 cut(s) | 398 |
| BseDI | CCNNGG | 2 cut(s) | 138, 499 |
| BseGI | GGATG | 2 cut(s) | 150, 168 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 110, 224 |
| BseMII | CTCAG | 1 cut(s) | 474 |
| BseNI | ACTGG | 5 cut(s) | 55, 97, 120, 251, 499 |
| BseRI | GAGGAG | 3 cut(s) | 20, 23, 442 |
| BseXI | GCAGC | 1 cut(s) | 466 |
| BseYI | CCCAGC | 2 cut(s) | 157, 223 |
| BshFI | GGCC | 1 cut(s) | 498 |
| BsiSI | CCGG | 3 cut(s) | 170, 218, 551 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 110, 224 |
| BsmAI | GTCTC | 1 cut(s) | 41 |
| BsnI | GGCC | 1 cut(s) | 498 |
| Bsp13I | TCCGGA | 1 cut(s) | 217 |
| Bsp143I | GATC | 4 cut(s) | 16, 31, 53, 196 |
| Bsp19I | CCATGG | 1 cut(s) | 499 |
| BspACI | CCGC | 4 cut(s) | 24, 133, 267, 530 |
| BspANI | GGCC | 1 cut(s) | 498 |
| BspCNI | CTCAG | 1 cut(s) | 475 |
| BspEI | TCCGGA | 1 cut(s) | 217 |
| BspLI | GGNNCC | 5 cut(s) | 102, 118, 168, 534, 549 |
| BspPI | GGATC | 2 cut(s) | 24, 61 |
| BsrBI | CCGCTC | 1 cut(s) | 267 |
| BsrFI | RCCGGY | 1 cut(s) | 169 |
| BsrI | ACTGG | 5 cut(s) | 55, 97, 120, 251, 499 |
| BssAI | RCCGGY | 1 cut(s) | 169 |
| BssECI | CCNNGG | 2 cut(s) | 138, 499 |
| BssMI | GATC | 4 cut(s) | 16, 31, 53, 196 |
| BssNI | GRCGYC | 1 cut(s) | 355 |
| BssT1I | CCWWGG | 2 cut(s) | 138, 499 |
| Bst2UI | CCWGG | 1 cut(s) | 398 |
| Bst4CI | ACNGT | 1 cut(s) | 183 |
| Bst6I | CTCTTC | 2 cut(s) | 301, 396 |
| BstACI | GRCGYC | 1 cut(s) | 355 |
| BstC8I | GCNNGC | 1 cut(s) | 306 |
| BstDEI | CTNAG | 1 cut(s) | 483 |
| BstDSI | CCRYGG | 1 cut(s) | 499 |
| BstF5I | GGATG | 2 cut(s) | 150, 168 |
| BstKTI | GATC | 4 cut(s) | 19, 34, 56, 199 |
| BstMAI | GTCTC | 1 cut(s) | 41 |
| BstMBI | GATC | 4 cut(s) | 16, 31, 53, 196 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 175, 479 |
| BstNI | CCWGG | 1 cut(s) | 398 |
| BstSCI | CCNGG | 1 cut(s) | 396 |
| BstSFI | CTRYAG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 1 cut(s) | 466 |
| BstV2I | GAAGAC | 2 cut(s) | 157, 194 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 145 |
| BsuRI | GGCC | 1 cut(s) | 498 |
| BtgI | CCRYGG | 1 cut(s) | 499 |
| BtgZI | GCGATG | 1 cut(s) | 323 |
| BtsCI | GGATG | 2 cut(s) | 150, 168 |
| BtsIMutI | CAGTG | 2 cut(s) | 127, 188 |
| Cac8I | GCNNGC | 1 cut(s) | 306 |
| Cfr10I | RCCGGY | 1 cut(s) | 169 |
| Cfr13I | GGNCC | 4 cut(s) | 117, 135, 172, 394 |
| CseI | GACGC | 2 cut(s) | 236, 344 |
| Csp6I | GTAC | 1 cut(s) | 27 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 546, 581 |
| CviAII | CATG | 3 cut(s) | 301, 500, 508 |
| CviQI | GTAC | 1 cut(s) | 27 |
| DdeI | CTNAG | 1 cut(s) | 483 |
| DpnI | GATC | 4 cut(s) | 18, 33, 55, 198 |
| DpnII | GATC | 4 cut(s) | 16, 31, 53, 196 |
| EaeI | YGGCCR | 1 cut(s) | 496 |
| Eam1104I | CTCTTC | 2 cut(s) | 301, 396 |
| EarI | CTCTTC | 2 cut(s) | 301, 396 |
| Eco130I | CCWWGG | 2 cut(s) | 138, 499 |
| Eco47I | GGWCC | 4 cut(s) | 117, 135, 172, 394 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| EcoRI | GAATTC | 1 cut(s) | 290 |
| EcoRII | CCWGG | 1 cut(s) | 396 |
| EcoT14I | CCWWGG | 2 cut(s) | 138, 499 |
| ErhI | CCWWGG | 2 cut(s) | 138, 499 |
| FaeI | CATG | 3 cut(s) | 304, 503, 511 |
| FaiI | YATR | 5 cut(s) | 88, 302, 423, 501, 509 |
| FatI | CATG | 3 cut(s) | 300, 499, 507 |
| FauI | CCCGC | 1 cut(s) | 260 |
| Fnu4HI | GCNGC | 2 cut(s) | 480, 531 |
| FokI | GGATG | 2 cut(s) | 157, 175 |
| Fsp4HI | GCNGC | 2 cut(s) | 480, 531 |
| FspBI | CTAG | 3 cut(s) | 105, 336, 594 |
| GluI | GCNGC | 2 cut(s) | 480, 531 |
| GsaI | CCCAGC | 2 cut(s) | 161, 227 |
| GsuI | CTGGAG | 1 cut(s) | 132 |
| HaeIII | GGCC | 1 cut(s) | 498 |
| HapII | CCGG | 3 cut(s) | 170, 218, 551 |
| HgaI | GACGC | 2 cut(s) | 236, 344 |
| Hin1I | GRCGYC | 1 cut(s) | 355 |
| Hin1II | CATG | 3 cut(s) | 304, 503, 511 |
| HindIII | AAGCTT | 1 cut(s) | 438 |
| HinfI | GANTC | 6 cut(s) | 11, 67, 412, 452, 504, 580 |
| HpaII | CCGG | 3 cut(s) | 170, 218, 551 |
| HphI | GGTGA | 1 cut(s) | 502 |
| Hpy188I | TCNGA | 3 cut(s) | 16, 64, 360 |
| Hpy188III | TCNNGA | 1 cut(s) | 218 |
| HpyAV | CCTTC | 7 cut(s) | 91, 265, 315, 324, 355, 566, 597 |
| HpyCH4III | ACNGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 4 cut(s) | 178, 304, 511, 557 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 175, 479 |
| HpyF3I | CTNAG | 1 cut(s) | 483 |
| Hsp92I | GRCGYC | 1 cut(s) | 355 |
| Hsp92II | CATG | 3 cut(s) | 304, 503, 511 |
| Kpn2I | TCCGGA | 1 cut(s) | 217 |
| Kzo9I | GATC | 4 cut(s) | 16, 31, 53, 196 |
| LmnI | GCTCC | 4 cut(s) | 166, 220, 264, 538 |
| Lsp1109I | GCAGC | 1 cut(s) | 466 |
| MaeI | CTAG | 3 cut(s) | 105, 336, 594 |
| MaeIII | GTNAC | 1 cut(s) | 490 |
| MalI | GATC | 4 cut(s) | 18, 33, 55, 198 |
| MbiI | CCGCTC | 1 cut(s) | 267 |
| MboI | GATC | 4 cut(s) | 16, 31, 53, 196 |
| MboII | GAAGA | 8 cut(s) | 162, 199, 288, 352, 355, 358, 413, 421 |
| MfeI | CAATTG | 1 cut(s) | 537 |
| MlsI | TGGCCA | 1 cut(s) | 498 |
| MluCI | AATT | 3 cut(s) | 290, 537, 603 |
| MluNI | TGGCCA | 1 cut(s) | 498 |
| MlyI | GAGTC | 3 cut(s) | 20, 76, 446 |
| MnlI | CCTC | 9 cut(s) | 107, 225, 385, 399, 420, 423, 478, 520, 538 |
| Mox20I | TGGCCA | 1 cut(s) | 498 |
| MroI | TCCGGA | 1 cut(s) | 217 |
| MscI | TGGCCA | 1 cut(s) | 498 |
| MseI | TTAA | 3 cut(s) | 381, 602, 607 |
| Msp20I | TGGCCA | 1 cut(s) | 498 |
| MspA1I | CMGCKG | 1 cut(s) | 157 |
| MspI | CCGG | 3 cut(s) | 170, 218, 551 |
| MspR9I | CCNGG | 1 cut(s) | 398 |
| MunI | CAATTG | 1 cut(s) | 537 |
| MvaI | CCWGG | 1 cut(s) | 398 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 175, 479 |
| NcoI | CCATGG | 1 cut(s) | 499 |
| NdeII | GATC | 4 cut(s) | 16, 31, 53, 196 |
| NlaIII | CATG | 3 cut(s) | 304, 503, 511 |
| NlaIV | GGNNCC | 5 cut(s) | 102, 118, 168, 534, 549 |
| NmuCI | GTSAC | 1 cut(s) | 490 |
| PfeI | GAWTC | 3 cut(s) | 412, 504, 580 |
| PkrI | GCNGC | 2 cut(s) | 481, 532 |
| PleI | GAGTC | 3 cut(s) | 19, 75, 446 |
| PpsI | GAGTC | 3 cut(s) | 19, 75, 446 |
| Psp6I | CCWGG | 1 cut(s) | 396 |
| PspFI | CCCAGC | 2 cut(s) | 157, 223 |
| PspGI | CCWGG | 1 cut(s) | 396 |
| PspN4I | GGNNCC | 5 cut(s) | 102, 118, 168, 534, 549 |
| PspPI | GGNCC | 4 cut(s) | 117, 135, 172, 394 |
| PvuII | CAGCTG | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 28 |
| RsaNI | GTAC | 1 cut(s) | 27 |
| SaqAI | TTAA | 3 cut(s) | 381, 602, 607 |
| SatI | GCNGC | 2 cut(s) | 480, 531 |
| Sau3AI | GATC | 4 cut(s) | 16, 31, 53, 196 |
| Sau96I | GGNCC | 4 cut(s) | 117, 135, 172, 394 |
| SchI | GAGTC | 3 cut(s) | 20, 76, 446 |
| ScrFI | CCNGG | 1 cut(s) | 398 |
| SetI | ASST | 9 cut(s) | 106, 112, 159, 225, 388, 442, 549, 577, 589 |
| SfcI | CTRYAG | 1 cut(s) | 387 |
| SinI | GGWCC | 4 cut(s) | 117, 135, 172, 394 |
| SpeI | ACTAGT | 1 cut(s) | 593 |
| Sse9I | AATT | 3 cut(s) | 290, 537, 603 |
| SsiI | CCGC | 4 cut(s) | 24, 133, 267, 530 |
| SspI | AATATT | 1 cut(s) | 280 |
| SspMI | CTAG | 3 cut(s) | 105, 336, 594 |
| StyD4I | CCNGG | 1 cut(s) | 396 |
| StyI | CCWWGG | 2 cut(s) | 138, 499 |
| TaaI | ACNGT | 1 cut(s) | 183 |
| TaqI | TCGA | 1 cut(s) | 230 |
| TasI | AATT | 3 cut(s) | 290, 537, 603 |
| TauI | GCSGC | 1 cut(s) | 533 |
| TfiI | GAWTC | 3 cut(s) | 412, 504, 580 |
| Tru1I | TTAA | 3 cut(s) | 381, 602, 607 |
| Tru9I | TTAA | 3 cut(s) | 381, 602, 607 |
| TscAI | CASTG | 2 cut(s) | 127, 188 |
| TseFI | GTSAC | 1 cut(s) | 490 |
| TseI | GCWGC | 1 cut(s) | 479 |
| Tsp45I | GTSAC | 1 cut(s) | 490 |
| TspDTI | ATGAA | 1 cut(s) | 272 |
| TspRI | CASTG | 2 cut(s) | 127, 188 |
| VpaK11BI | GGWCC | 4 cut(s) | 117, 135, 172, 394 |
| XapI | RAATTY | 1 cut(s) | 290 |
| XspI | CTAG | 3 cut(s) | 105, 336, 594 |