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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 232 |
| Acc36I | ACCTGC | 1 cut(s) | 232 |
| AccI | GTMKAC | 1 cut(s) | 313 |
| AclWI | GGATC | 1 cut(s) | 108 |
| AcuI | CTGAAG | 1 cut(s) | 125 |
| AcyI | GRCGYC | 1 cut(s) | 59 |
| AfaI | GTAC | 1 cut(s) | 21 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 451 |
| AgsI | TTSAA | 2 cut(s) | 503, 615 |
| AjnI | CCWGG | 1 cut(s) | 264 |
| AluBI | AGCT | 3 cut(s) | 307, 440, 572 |
| AluI | AGCT | 3 cut(s) | 307, 440, 572 |
| AlwI | GGATC | 1 cut(s) | 108 |
| Ama87I | CYCGRG | 1 cut(s) | 94 |
| AoxI | GGCC | 3 cut(s) | 90, 167, 378 |
| ApeKI | GCWGC | 1 cut(s) | 47 |
| AspS9I | GGNCC | 1 cut(s) | 378 |
| AsuC2I | CCSGG | 1 cut(s) | 195 |
| AsuHPI | GGTGA | 3 cut(s) | 247, 397, 574 |
| AsuII | TTCGAA | 1 cut(s) | 485 |
| AvaI | CYCGRG | 1 cut(s) | 94 |
| AxyI | CCTNAGG | 1 cut(s) | 318 |
| BanII | GRGCYC | 1 cut(s) | 102 |
| BbsI | GAAGAC | 1 cut(s) | 305 |
| BbvCI | CCTCAGC | 1 cut(s) | 573 |
| BbvI | GCAGC | 1 cut(s) | 34 |
| BccI | CCATC | 1 cut(s) | 472 |
| BciT130I | CCWGG | 1 cut(s) | 266 |
| BcnI | CCSGG | 1 cut(s) | 195 |
| BfaI | CTAG | 4 cut(s) | 54, 80, 128, 569 |
| BfuAI | ACCTGC | 1 cut(s) | 232 |
| BisI | GCNGC | 1 cut(s) | 48 |
| BlsI | GCNGC | 1 cut(s) | 49 |
| Bme1390I | CCNGG | 2 cut(s) | 195, 266 |
| BmeT110I | CYCGRG | 1 cut(s) | 94 |
| BmgT120I | GGNCC | 1 cut(s) | 378 |
| BmiI | GGNNCC | 3 cut(s) | 101, 456, 466 |
| BmrFI | CCNGG | 2 cut(s) | 195, 266 |
| BmsI | GCATC | 2 cut(s) | 140, 563 |
| BpiI | GAAGAC | 1 cut(s) | 305 |
| Bpu10I | CCTNAGC | 1 cut(s) | 573 |
| Bpu14I | TTCGAA | 1 cut(s) | 485 |
| BpuEI | CTTGAG | 1 cut(s) | 437 |
| BpuMI | CCSGG | 1 cut(s) | 195 |
| BsaHI | GRCGYC | 1 cut(s) | 59 |
| BsaJI | CCNNGG | 4 cut(s) | 93, 264, 381, 468 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 451 |
| Bse1I | ACTGG | 1 cut(s) | 445 |
| Bse21I | CCTNAGG | 1 cut(s) | 318 |
| BseBI | CCWGG | 1 cut(s) | 266 |
| BseDI | CCNNGG | 4 cut(s) | 93, 264, 381, 468 |
| BseGI | GGATG | 2 cut(s) | 514, 583 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 451 |
| BseMII | CTCAG | 3 cut(s) | 421, 564, 585 |
| BseNI | ACTGG | 1 cut(s) | 445 |
| BseRI | GAGGAG | 1 cut(s) | 434 |
| BseXI | GCAGC | 1 cut(s) | 34 |
| BshFI | GGCC | 3 cut(s) | 92, 169, 380 |
| BsiHKCI | CYCGRG | 1 cut(s) | 94 |
| BsiSI | CCGG | 1 cut(s) | 194 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 451 |
| BsnI | GGCC | 3 cut(s) | 92, 169, 380 |
| BsoBI | CYCGRG | 1 cut(s) | 94 |
| Bsp119I | TTCGAA | 1 cut(s) | 485 |
| Bsp1286I | GDGCHC | 1 cut(s) | 102 |
| Bsp143I | GATC | 3 cut(s) | 113, 150, 274 |
| BspANI | GGCC | 3 cut(s) | 92, 169, 380 |
| BspCNI | CTCAG | 3 cut(s) | 420, 565, 586 |
| BspLI | GGNNCC | 3 cut(s) | 101, 456, 466 |
| BspMI | ACCTGC | 1 cut(s) | 232 |
| BspPI | GGATC | 1 cut(s) | 108 |
| BspT104I | TTCGAA | 1 cut(s) | 485 |
| BsrI | ACTGG | 1 cut(s) | 445 |
| BssECI | CCNNGG | 4 cut(s) | 93, 264, 381, 468 |
| BssMI | GATC | 3 cut(s) | 113, 150, 274 |
| BssNI | GRCGYC | 1 cut(s) | 59 |
| BssT1I | CCWWGG | 1 cut(s) | 381 |
| Bst2UI | CCWGG | 1 cut(s) | 266 |
| Bst4CI | ACNGT | 1 cut(s) | 565 |
| BstACI | GRCGYC | 1 cut(s) | 59 |
| BstBI | TTCGAA | 1 cut(s) | 485 |
| BstC8I | GCNNGC | 1 cut(s) | 537 |
| BstDEI | CTNAG | 5 cut(s) | 318, 327, 407, 573, 594 |
| BstF5I | GGATG | 2 cut(s) | 514, 583 |
| BstKTI | GATC | 3 cut(s) | 116, 153, 277 |
| BstMBI | GATC | 3 cut(s) | 113, 150, 274 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 56 |
| BstNI | CCWGG | 1 cut(s) | 266 |
| BstSCI | CCNGG | 2 cut(s) | 193, 264 |
| BstV1I | GCAGC | 1 cut(s) | 34 |
| BstV2I | GAAGAC | 1 cut(s) | 305 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| Bsu36I | CCTNAGG | 1 cut(s) | 318 |
| BsuRI | GGCC | 3 cut(s) | 92, 169, 380 |
| BtsCI | GGATG | 2 cut(s) | 514, 583 |
| BtsIMutI | CAGTG | 2 cut(s) | 141, 160 |
| BveI | ACCTGC | 1 cut(s) | 232 |
| Cac8I | GCNNGC | 1 cut(s) | 537 |
| Cfr13I | GGNCC | 1 cut(s) | 378 |
| CseI | GACGC | 1 cut(s) | 48 |
| Csp6I | GTAC | 1 cut(s) | 20 |
| CviAII | CATG | 1 cut(s) | 514 |
| CviQI | GTAC | 1 cut(s) | 20 |
| DdeI | CTNAG | 5 cut(s) | 318, 327, 407, 573, 594 |
| DpnI | GATC | 3 cut(s) | 115, 152, 276 |
| DpnII | GATC | 3 cut(s) | 113, 150, 274 |
| Eco130I | CCWWGG | 1 cut(s) | 381 |
| Eco147I | AGGCCT | 2 cut(s) | 92, 169 |
| Eco24I | GRGCYC | 1 cut(s) | 102 |
| Eco57I | CTGAAG | 1 cut(s) | 125 |
| Eco81I | CCTNAGG | 1 cut(s) | 318 |
| Eco88I | CYCGRG | 1 cut(s) | 94 |
| EcoRII | CCWGG | 1 cut(s) | 264 |
| EcoT14I | CCWWGG | 1 cut(s) | 381 |
| EcoT38I | GRGCYC | 1 cut(s) | 102 |
| ErhI | CCWWGG | 1 cut(s) | 381 |
| FaeI | CATG | 1 cut(s) | 517 |
| FaiI | YATR | 3 cut(s) | 515, 524, 602 |
| FatI | CATG | 1 cut(s) | 513 |
| FblI | GTMKAC | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 1 cut(s) | 48 |
| FokI | GGATG | 2 cut(s) | 521, 590 |
| FriOI | GRGCYC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 1 cut(s) | 48 |
| FspBI | CTAG | 4 cut(s) | 54, 80, 128, 569 |
| GluI | GCNGC | 1 cut(s) | 48 |
| HaeIII | GGCC | 3 cut(s) | 92, 169, 380 |
| HapII | CCGG | 1 cut(s) | 194 |
| HgaI | GACGC | 1 cut(s) | 48 |
| Hin1I | GRCGYC | 1 cut(s) | 59 |
| Hin1II | CATG | 1 cut(s) | 517 |
| HincII | GTYRAC | 1 cut(s) | 314 |
| HindII | GTYRAC | 1 cut(s) | 314 |
| HindIII | AAGCTT | 1 cut(s) | 305 |
| HinfI | GANTC | 4 cut(s) | 35, 83, 373, 494 |
| HpaII | CCGG | 1 cut(s) | 194 |
| HphI | GGTGA | 3 cut(s) | 247, 397, 574 |
| Hpy166II | GTNNAC | 2 cut(s) | 200, 314 |
| Hpy188I | TCNGA | 4 cut(s) | 396, 410, 559, 607 |
| Hpy188III | TCNNGA | 2 cut(s) | 103, 370 |
| Hpy8I | GTNNAC | 2 cut(s) | 200, 314 |
| HpyAV | CCTTC | 1 cut(s) | 352 |
| HpyCH4III | ACNGT | 1 cut(s) | 565 |
| HpyCH4V | TGCA | 3 cut(s) | 50, 146, 347 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 56 |
| HpyF3I | CTNAG | 5 cut(s) | 318, 327, 407, 573, 594 |
| Hsp92I | GRCGYC | 1 cut(s) | 59 |
| Hsp92II | CATG | 1 cut(s) | 517 |
| Kzo9I | GATC | 3 cut(s) | 113, 150, 274 |
| LmnI | GCTCC | 3 cut(s) | 105, 268, 464 |
| Lsp1109I | GCAGC | 1 cut(s) | 34 |
| LweI | GCATC | 2 cut(s) | 140, 563 |
| MaeI | CTAG | 4 cut(s) | 54, 80, 128, 569 |
| MaeIII | GTNAC | 2 cut(s) | 158, 580 |
| MalI | GATC | 3 cut(s) | 115, 152, 276 |
| MboI | GATC | 3 cut(s) | 113, 150, 274 |
| MboII | GAAGA | 4 cut(s) | 44, 118, 254, 310 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 1 cut(s) | 102 |
| MluCI | AATT | 1 cut(s) | 615 |
| MlyI | GAGTC | 1 cut(s) | 77 |
| MmeI | TCCRAC | 1 cut(s) | 429 |
| MseI | TTAA | 1 cut(s) | 284 |
| MspI | CCGG | 1 cut(s) | 194 |
| MspR9I | CCNGG | 2 cut(s) | 195, 266 |
| MvaI | CCWGG | 1 cut(s) | 266 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 56 |
| NciI | CCSGG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 113, 150, 274 |
| NlaIII | CATG | 1 cut(s) | 517 |
| NlaIV | GGNNCC | 3 cut(s) | 101, 456, 466 |
| NmeAIII | GCCGAG | 1 cut(s) | 493 |
| NmuCI | GTSAC | 2 cut(s) | 158, 580 |
| NspV | TTCGAA | 1 cut(s) | 485 |
| PaqCI | CACCTGC | 1 cut(s) | 232 |
| PceI | AGGCCT | 2 cut(s) | 92, 169 |
| PfeI | GAWTC | 3 cut(s) | 35, 373, 494 |
| PkrI | GCNGC | 1 cut(s) | 49 |
| PleI | GAGTC | 1 cut(s) | 77 |
| PpsI | GAGTC | 1 cut(s) | 77 |
| Psp6I | CCWGG | 1 cut(s) | 264 |
| PspGI | CCWGG | 1 cut(s) | 264 |
| PspN4I | GGNNCC | 3 cut(s) | 101, 456, 466 |
| PspPI | GGNCC | 1 cut(s) | 378 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| RsaI | GTAC | 1 cut(s) | 21 |
| RsaNI | GTAC | 1 cut(s) | 20 |
| SalI | GTCGAC | 1 cut(s) | 312 |
| SaqAI | TTAA | 1 cut(s) | 284 |
| SatI | GCNGC | 1 cut(s) | 48 |
| Sau3AI | GATC | 3 cut(s) | 113, 150, 274 |
| Sau96I | GGNCC | 1 cut(s) | 378 |
| SchI | GAGTC | 1 cut(s) | 77 |
| ScrFI | CCNGG | 2 cut(s) | 195, 266 |
| SduI | GDGCHC | 1 cut(s) | 102 |
| SfaNI | GCATC | 2 cut(s) | 140, 563 |
| SfuI | TTCGAA | 1 cut(s) | 485 |
| SmlI | CTYRAG | 1 cut(s) | 416 |
| SmoI | CTYRAG | 1 cut(s) | 416 |
| Sse9I | AATT | 1 cut(s) | 615 |
| SseBI | AGGCCT | 2 cut(s) | 92, 169 |
| SspMI | CTAG | 4 cut(s) | 54, 80, 128, 569 |
| StuI | AGGCCT | 2 cut(s) | 92, 169 |
| StyD4I | CCNGG | 2 cut(s) | 193, 264 |
| StyI | CCWWGG | 1 cut(s) | 381 |
| TaaI | ACNGT | 1 cut(s) | 565 |
| TaqI | TCGA | 2 cut(s) | 313, 485 |
| TasI | AATT | 1 cut(s) | 615 |
| TfiI | GAWTC | 3 cut(s) | 35, 373, 494 |
| Tru1I | TTAA | 1 cut(s) | 284 |
| Tru9I | TTAA | 1 cut(s) | 284 |
| TscAI | CASTG | 2 cut(s) | 141, 160 |
| TseFI | GTSAC | 2 cut(s) | 158, 580 |
| TseI | GCWGC | 1 cut(s) | 47 |
| Tsp45I | GTSAC | 2 cut(s) | 158, 580 |
| TspDTI | ATGAA | 2 cut(s) | 255, 507 |
| TspGWI | ACGGA | 1 cut(s) | 188 |
| TspRI | CASTG | 2 cut(s) | 141, 160 |
| XmiI | GTMKAC | 1 cut(s) | 313 |
| XspI | CTAG | 4 cut(s) | 54, 80, 128, 569 |