Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 68 |
| AciI | CCGC | 4 cut(s) | 68, 71, 359, 627 |
| AcsI | RAATTY | 1 cut(s) | 533 |
| AcuI | CTGAAG | 1 cut(s) | 368 |
| AcyI | GRCGYC | 1 cut(s) | 166 |
| AfaI | GTAC | 1 cut(s) | 517 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 244, 337 |
| AgsI | TTSAA | 3 cut(s) | 79, 142, 533 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 679 |
| AjnI | CCWGG | 2 cut(s) | 125, 263 |
| AluBI | AGCT | 3 cut(s) | 233, 452, 670 |
| AluI | AGCT | 3 cut(s) | 233, 452, 670 |
| Alw21I | GWGCWC | 1 cut(s) | 149 |
| Alw26I | GTCTC | 2 cut(s) | 173, 592 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 670 |
| Ama87I | CYCGRG | 3 cut(s) | 42, 133, 676 |
| ApeKI | GCWGC | 2 cut(s) | 620, 667 |
| ApoI | RAATTY | 1 cut(s) | 533 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 469, 501 |
| AspS9I | GGNCC | 1 cut(s) | 260 |
| AsuC2I | CCSGG | 2 cut(s) | 134, 135 |
| AsuHPI | GGTGA | 3 cut(s) | 212, 308, 760 |
| AvaI | CYCGRG | 3 cut(s) | 42, 133, 676 |
| AvaII | GGWCC | 1 cut(s) | 260 |
| BanII | GRGCYC | 2 cut(s) | 250, 317 |
| Bbv12I | GWGCWC | 1 cut(s) | 149 |
| BbvI | GCAGC | 2 cut(s) | 632, 679 |
| BccI | CCATC | 5 cut(s) | 163, 167, 299, 304, 736 |
| BciT130I | CCWGG | 2 cut(s) | 127, 265 |
| BciVI | GTATCC | 1 cut(s) | 490 |
| BclI | TGATCA | 1 cut(s) | 442 |
| BcnI | CCSGG | 2 cut(s) | 134, 135 |
| BcoDI | GTCTC | 2 cut(s) | 173, 592 |
| BfmI | CTRYAG | 1 cut(s) | 271 |
| BfuI | GTATCC | 1 cut(s) | 490 |
| BglII | AGATCT | 3 cut(s) | 116, 173, 348 |
| BisI | GCNGC | 5 cut(s) | 69, 72, 360, 621, 668 |
| BlsI | GCNGC | 5 cut(s) | 70, 73, 361, 622, 669 |
| Bme1390I | CCNGG | 4 cut(s) | 127, 134, 135, 265 |
| Bme18I | GGWCC | 1 cut(s) | 260 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 679 |
| BmeT110I | CYCGRG | 3 cut(s) | 42, 133, 676 |
| BmgT120I | GGNCC | 1 cut(s) | 260 |
| BmiI | GGNNCC | 4 cut(s) | 28, 131, 262, 415 |
| BmrFI | CCNGG | 4 cut(s) | 127, 134, 135, 265 |
| BmsI | GCATC | 1 cut(s) | 699 |
| BpuMI | CCSGG | 2 cut(s) | 134, 135 |
| BsaHI | GRCGYC | 1 cut(s) | 166 |
| BsaJI | CCNNGG | 2 cut(s) | 133, 263 |
| BsaWI | WCCGGW | 1 cut(s) | 553 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 600, 630 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 244, 337 |
| Bse118I | RCCGGY | 1 cut(s) | 629 |
| Bse1I | ACTGG | 3 cut(s) | 95, 217, 378 |
| BseBI | CCWGG | 2 cut(s) | 127, 265 |
| BseDI | CCNNGG | 2 cut(s) | 133, 263 |
| BseGI | GGATG | 4 cut(s) | 155, 315, 528, 730 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 244, 337 |
| BseMII | CTCAG | 1 cut(s) | 184 |
| BseNI | ACTGG | 3 cut(s) | 95, 217, 378 |
| BseRI | GAGGAG | 3 cut(s) | 482, 485, 734 |
| BseXI | GCAGC | 2 cut(s) | 632, 679 |
| BsiHKAI | GWGCWC | 1 cut(s) | 149 |
| BsiHKCI | CYCGRG | 3 cut(s) | 42, 133, 676 |
| BsiSI | CCGG | 3 cut(s) | 134, 554, 630 |
| BslFI | GGGAC | 2 cut(s) | 246, 353 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 244, 337 |
| BsmAI | GTCTC | 2 cut(s) | 173, 592 |
| BsmBI | CGTCTC | 1 cut(s) | 173 |
| BsmFI | GGGAC | 2 cut(s) | 246, 353 |
| BsoBI | CYCGRG | 3 cut(s) | 42, 133, 676 |
| Bsp1286I | GDGCHC | 3 cut(s) | 149, 250, 317 |
| Bsp143I | GATC | 6 cut(s) | 116, 173, 202, 223, 348, 442 |
| BspACI | CCGC | 4 cut(s) | 68, 71, 359, 627 |
| BspCNI | CTCAG | 1 cut(s) | 183 |
| BspLI | GGNNCC | 4 cut(s) | 28, 131, 262, 415 |
| BspQI | GCTCTTC | 2 cut(s) | 255, 459 |
| BsrBI | CCGCTC | 1 cut(s) | 68 |
| BsrFI | RCCGGY | 1 cut(s) | 629 |
| BsrI | ACTGG | 3 cut(s) | 95, 217, 378 |
| BssAI | RCCGGY | 1 cut(s) | 629 |
| BssECI | CCNNGG | 2 cut(s) | 133, 263 |
| BssMI | GATC | 6 cut(s) | 116, 173, 202, 223, 348, 442 |
| BssNI | GRCGYC | 1 cut(s) | 166 |
| Bst2UI | CCWGG | 2 cut(s) | 127, 265 |
| Bst4CI | ACNGT | 2 cut(s) | 336, 616 |
| Bst6I | CTCTTC | 3 cut(s) | 218, 255, 459 |
| BstACI | GRCGYC | 1 cut(s) | 166 |
| BstDEI | CTNAG | 2 cut(s) | 113, 170 |
| BstF5I | GGATG | 4 cut(s) | 155, 315, 528, 730 |
| BstKTI | GATC | 6 cut(s) | 119, 176, 205, 226, 351, 445 |
| BstMAI | GTCTC | 2 cut(s) | 173, 592 |
| BstMBI | GATC | 6 cut(s) | 116, 173, 202, 223, 348, 442 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 68, 626 |
| BstNI | CCWGG | 2 cut(s) | 127, 265 |
| BstSCI | CCNGG | 4 cut(s) | 125, 132, 133, 263 |
| BstSFI | CTRYAG | 1 cut(s) | 271 |
| BstV1I | GCAGC | 2 cut(s) | 632, 679 |
| BstX2I | RGATCY | 3 cut(s) | 116, 173, 348 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 162 |
| BstYI | RGATCY | 3 cut(s) | 116, 173, 348 |
| BsuI | GTATCC | 1 cut(s) | 490 |
| BtsCI | GGATG | 4 cut(s) | 155, 315, 528, 730 |
| BtsIMutI | CAGTG | 3 cut(s) | 88, 332, 404 |
| CaiI | CAGNNNCTG | 1 cut(s) | 670 |
| Cfr10I | RCCGGY | 1 cut(s) | 629 |
| Cfr13I | GGNCC | 1 cut(s) | 260 |
| Cfr9I | CCCGGG | 1 cut(s) | 133 |
| CseI | GACGC | 1 cut(s) | 155 |
| CsiI | ACCWGGT | 1 cut(s) | 125 |
| Csp6I | GTAC | 1 cut(s) | 516 |
| CviAII | CATG | 4 cut(s) | 254, 283, 343, 519 |
| CviQI | GTAC | 1 cut(s) | 516 |
| DdeI | CTNAG | 2 cut(s) | 113, 170 |
| DpnI | GATC | 6 cut(s) | 118, 175, 204, 225, 350, 444 |
| DpnII | GATC | 6 cut(s) | 116, 173, 202, 223, 348, 442 |
| DriI | GACNNNNNGTC | 1 cut(s) | 679 |
| Eam1104I | CTCTTC | 3 cut(s) | 218, 255, 459 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 679 |
| EarI | CTCTTC | 3 cut(s) | 218, 255, 459 |
| Eco24I | GRGCYC | 2 cut(s) | 250, 317 |
| Eco47I | GGWCC | 1 cut(s) | 260 |
| Eco57I | CTGAAG | 1 cut(s) | 368 |
| Eco88I | CYCGRG | 3 cut(s) | 42, 133, 676 |
| EcoRII | CCWGG | 2 cut(s) | 125, 263 |
| EcoT38I | GRGCYC | 2 cut(s) | 250, 317 |
| Esp3I | CGTCTC | 1 cut(s) | 173 |
| FaeI | CATG | 4 cut(s) | 257, 286, 346, 522 |
| FaqI | GGGAC | 2 cut(s) | 246, 353 |
| FatI | CATG | 4 cut(s) | 253, 282, 342, 518 |
| FbaI | TGATCA | 1 cut(s) | 442 |
| Fnu4HI | GCNGC | 5 cut(s) | 69, 72, 360, 621, 668 |
| FokI | GGATG | 4 cut(s) | 142, 322, 535, 737 |
| FriOI | GRGCYC | 2 cut(s) | 250, 317 |
| Fsp4HI | GCNGC | 5 cut(s) | 69, 72, 360, 621, 668 |
| GluI | GCNGC | 5 cut(s) | 69, 72, 360, 621, 668 |
| HapII | CCGG | 3 cut(s) | 134, 554, 630 |
| HgaI | GACGC | 1 cut(s) | 155 |
| Hin1I | GRCGYC | 1 cut(s) | 166 |
| Hin1II | CATG | 4 cut(s) | 257, 286, 346, 522 |
| HinfI | GANTC | 7 cut(s) | 138, 433, 480, 674, 686, 700, 751 |
| HpaII | CCGG | 3 cut(s) | 134, 554, 630 |
| HphI | GGTGA | 3 cut(s) | 212, 308, 760 |
| Hpy188I | TCNGA | 5 cut(s) | 173, 387, 418, 489, 685 |
| Hpy188III | TCNNGA | 2 cut(s) | 142, 227 |
| HpyAV | CCTTC | 4 cut(s) | 73, 392, 578, 653 |
| HpyCH4III | ACNGT | 2 cut(s) | 336, 616 |
| HpyCH4V | TGCA | 4 cut(s) | 551, 595, 620, 712 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 68, 626 |
| HpyF3I | CTNAG | 2 cut(s) | 113, 170 |
| Hsp92I | GRCGYC | 1 cut(s) | 166 |
| Hsp92II | CATG | 4 cut(s) | 257, 286, 346, 522 |
| Ksp22I | TGATCA | 1 cut(s) | 442 |
| Kzo9I | GATC | 6 cut(s) | 116, 173, 202, 223, 348, 442 |
| LguI | GCTCTTC | 2 cut(s) | 255, 459 |
| LmnI | GCTCC | 3 cut(s) | 65, 419, 472 |
| Lsp1109I | GCAGC | 2 cut(s) | 632, 679 |
| LweI | GCATC | 1 cut(s) | 699 |
| MabI | ACCWGGT | 1 cut(s) | 125 |
| MaeIII | GTNAC | 3 cut(s) | 369, 458, 691 |
| MalI | GATC | 6 cut(s) | 118, 175, 204, 225, 350, 444 |
| MbiI | CCGCTC | 1 cut(s) | 68 |
| MboI | GATC | 6 cut(s) | 116, 173, 202, 223, 348, 442 |
| MboII | GAAGA | 3 cut(s) | 205, 242, 446 |
| MfeI | CAATTG | 1 cut(s) | 546 |
| MflI | RGATCY | 3 cut(s) | 116, 173, 348 |
| MhlI | GDGCHC | 3 cut(s) | 149, 250, 317 |
| MluCI | AATT | 2 cut(s) | 533, 546 |
| MlyI | GAGTC | 1 cut(s) | 668 |
| MmeI | TCCRAC | 1 cut(s) | 636 |
| MnlI | CCTC | 8 cut(s) | 316, 460, 463, 602, 708, 712, 715, 721 |
| MseI | TTAA | 2 cut(s) | 401, 561 |
| MspA1I | CMGCKG | 1 cut(s) | 670 |
| MspI | CCGG | 3 cut(s) | 134, 554, 630 |
| MspR9I | CCNGG | 4 cut(s) | 127, 134, 135, 265 |
| MunI | CAATTG | 1 cut(s) | 546 |
| MvaI | CCWGG | 2 cut(s) | 127, 265 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 68, 626 |
| NciI | CCSGG | 2 cut(s) | 134, 135 |
| NdeII | GATC | 6 cut(s) | 116, 173, 202, 223, 348, 442 |
| NlaIII | CATG | 4 cut(s) | 257, 286, 346, 522 |
| NlaIV | GGNNCC | 4 cut(s) | 28, 131, 262, 415 |
| NmuCI | GTSAC | 2 cut(s) | 458, 691 |
| PciSI | GCTCTTC | 2 cut(s) | 255, 459 |
| PfeI | GAWTC | 6 cut(s) | 138, 433, 480, 686, 700, 751 |
| PkrI | GCNGC | 5 cut(s) | 70, 73, 361, 622, 669 |
| PleI | GAGTC | 1 cut(s) | 668 |
| PpsI | GAGTC | 1 cut(s) | 668 |
| Psp6I | CCWGG | 2 cut(s) | 125, 263 |
| PspGI | CCWGG | 2 cut(s) | 125, 263 |
| PspN4I | GGNNCC | 4 cut(s) | 28, 131, 262, 415 |
| PspPI | GGNCC | 1 cut(s) | 260 |
| PstNI | CAGNNNCTG | 1 cut(s) | 670 |
| PsuI | RGATCY | 3 cut(s) | 116, 173, 348 |
| PvuII | CAGCTG | 1 cut(s) | 670 |
| RsaI | GTAC | 1 cut(s) | 517 |
| RsaNI | GTAC | 1 cut(s) | 516 |
| SapI | GCTCTTC | 2 cut(s) | 255, 459 |
| SaqAI | TTAA | 2 cut(s) | 401, 561 |
| SatI | GCNGC | 5 cut(s) | 69, 72, 360, 621, 668 |
| Sau3AI | GATC | 6 cut(s) | 116, 173, 202, 223, 348, 442 |
| Sau96I | GGNCC | 1 cut(s) | 260 |
| SchI | GAGTC | 1 cut(s) | 668 |
| ScrFI | CCNGG | 4 cut(s) | 127, 134, 135, 265 |
| SduI | GDGCHC | 3 cut(s) | 149, 250, 317 |
| SetI | ASST | 6 cut(s) | 131, 235, 298, 454, 672, 732 |
| SexAI | ACCWGGT | 1 cut(s) | 125 |
| SfaNI | GCATC | 1 cut(s) | 699 |
| SfcI | CTRYAG | 1 cut(s) | 271 |
| SgrAI | CRCCGGYG | 1 cut(s) | 629 |
| SinI | GGWCC | 1 cut(s) | 260 |
| SmaI | CCCGGG | 1 cut(s) | 135 |
| Sse9I | AATT | 2 cut(s) | 533, 546 |
| SsiI | CCGC | 4 cut(s) | 68, 71, 359, 627 |
| StyD4I | CCNGG | 4 cut(s) | 125, 132, 133, 263 |
| TaaI | ACNGT | 2 cut(s) | 336, 616 |
| TaqII | GACCGA | 1 cut(s) | 252 |
| TasI | AATT | 2 cut(s) | 533, 546 |
| TauI | GCSGC | 3 cut(s) | 71, 74, 362 |
| TfiI | GAWTC | 6 cut(s) | 138, 433, 480, 686, 700, 751 |
| Tru1I | TTAA | 2 cut(s) | 401, 561 |
| Tru9I | TTAA | 2 cut(s) | 401, 561 |
| TscAI | CASTG | 3 cut(s) | 95, 339, 411 |
| TseFI | GTSAC | 2 cut(s) | 458, 691 |
| TseI | GCWGC | 2 cut(s) | 620, 667 |
| Tsp45I | GTSAC | 2 cut(s) | 458, 691 |
| TspDTI | ATGAA | 1 cut(s) | 242 |
| TspGWI | ACGGA | 1 cut(s) | 473 |
| TspMI | CCCGGG | 1 cut(s) | 133 |
| TspRI | CASTG | 3 cut(s) | 95, 339, 411 |
| VpaK11BI | GGWCC | 1 cut(s) | 260 |
| XapI | RAATTY | 1 cut(s) | 533 |
| XmaI | CCCGGG | 1 cut(s) | 133 |