Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 228, 1007, 1260 |
| AccI | GTMKAC | 1 cut(s) | 1175 |
| AciI | CCGC | 1 cut(s) | 1181 |
| AclI | AACGTT | 2 cut(s) | 62, 585 |
| AclWI | GGATC | 3 cut(s) | 626, 1207, 1303 |
| AcsI | RAATTY | 5 cut(s) | 187, 197, 296, 871, 1044 |
| AcuI | CTGAAG | 1 cut(s) | 960 |
| AfaI | GTAC | 5 cut(s) | 37, 326, 569, 727, 1159 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1123 |
| AleI | CACNNNNGTG | 1 cut(s) | 1380 |
| AluBI | AGCT | 8 cut(s) | 577, 696, 855, 901, 996, 1098, 1264, 1285 |
| AluI | AGCT | 8 cut(s) | 577, 696, 855, 901, 996, 1098, 1264, 1285 |
| Alw26I | GTCTC | 2 cut(s) | 375, 507 |
| AlwI | GGATC | 3 cut(s) | 626, 1207, 1303 |
| Ama87I | CYCGRG | 1 cut(s) | 1328 |
| ApeKI | GCWGC | 1 cut(s) | 1237 |
| ApoI | RAATTY | 5 cut(s) | 187, 197, 296, 871, 1044 |
| AspS9I | GGNCC | 1 cut(s) | 176 |
| AsuHPI | GGTGA | 4 cut(s) | 35, 263, 779, 801 |
| AvaI | CYCGRG | 1 cut(s) | 1328 |
| AvaII | GGWCC | 1 cut(s) | 176 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1016, 1048 |
| BbvI | GCAGC | 1 cut(s) | 1249 |
| BccI | CCATC | 4 cut(s) | 187, 373, 1126, 1348 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 281, 315 |
| BciVI | GTATCC | 1 cut(s) | 1220 |
| BcoDI | GTCTC | 2 cut(s) | 375, 507 |
| BfaI | CTAG | 5 cut(s) | 741, 813, 932, 965, 1425 |
| BfuI | GTATCC | 1 cut(s) | 1220 |
| BglII | AGATCT | 1 cut(s) | 432 |
| BisI | GCNGC | 1 cut(s) | 1238 |
| BlsI | GCNGC | 1 cut(s) | 1239 |
| BmcAI | AGTACT | 2 cut(s) | 326, 1159 |
| Bme18I | GGWCC | 1 cut(s) | 176 |
| BmeT110I | CYCGRG | 1 cut(s) | 1328 |
| BmgT120I | GGNCC | 1 cut(s) | 176 |
| BmiI | GGNNCC | 1 cut(s) | 315 |
| BmrI | ACTGGG | 2 cut(s) | 77, 1240 |
| BmsI | GCATC | 3 cut(s) | 486, 753, 1006 |
| BmuI | ACTGGG | 2 cut(s) | 77, 1240 |
| BpuEI | CTTGAG | 3 cut(s) | 341, 449, 677 |
| Bsa29I | ATCGAT | 1 cut(s) | 1454 |
| BsaAI | YACGTR | 1 cut(s) | 567 |
| BsaI | GGTCTC | 1 cut(s) | 507 |
| BsaJI | CCNNGG | 3 cut(s) | 204, 274, 1246 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 272, 302 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1123 |
| Bse1I | ACTGG | 3 cut(s) | 83, 1235, 1378 |
| Bse3DI | GCAATG | 1 cut(s) | 1149 |
| BseCI | ATCGAT | 1 cut(s) | 1454 |
| BseDI | CCNNGG | 3 cut(s) | 204, 274, 1246 |
| BseGI | GGATG | 6 cut(s) | 179, 215, 240, 454, 667, 1404 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1123 |
| BseMI | GCAATG | 1 cut(s) | 1149 |
| BseMII | CTCAG | 2 cut(s) | 1145, 1352 |
| BseNI | ACTGG | 3 cut(s) | 83, 1235, 1378 |
| BseXI | GCAGC | 1 cut(s) | 1249 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1281 |
| BshVI | ATCGAT | 1 cut(s) | 1454 |
| BsiEI | CGRYCG | 1 cut(s) | 1281 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1328 |
| BslFI | GGGAC | 1 cut(s) | 1100 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1123 |
| BsmAI | GTCTC | 2 cut(s) | 375, 507 |
| BsmFI | GGGAC | 1 cut(s) | 1100 |
| Bso31I | GGTCTC | 1 cut(s) | 507 |
| BsoBI | CYCGRG | 1 cut(s) | 1328 |
| Bsp143I | GATC | 7 cut(s) | 121, 424, 432, 618, 1199, 1278, 1295 |
| BspACI | CCGC | 1 cut(s) | 1181 |
| BspCNI | CTCAG | 2 cut(s) | 1146, 1351 |
| BspDI | ATCGAT | 1 cut(s) | 1454 |
| BspLI | GGNNCC | 1 cut(s) | 315 |
| BspPI | GGATC | 3 cut(s) | 626, 1207, 1303 |
| BspTNI | GGTCTC | 1 cut(s) | 507 |
| BsrDI | GCAATG | 1 cut(s) | 1149 |
| BsrI | ACTGG | 3 cut(s) | 83, 1235, 1378 |
| BssECI | CCNNGG | 3 cut(s) | 204, 274, 1246 |
| BssMI | GATC | 7 cut(s) | 121, 424, 432, 618, 1199, 1278, 1295 |
| BssT1I | CCWWGG | 2 cut(s) | 204, 1246 |
| Bst4CI | ACNGT | 1 cut(s) | 275 |
| BstBAI | YACGTR | 1 cut(s) | 567 |
| BstC8I | GCNNGC | 1 cut(s) | 1335 |
| BstDEI | CTNAG | 4 cut(s) | 910, 1111, 1154, 1338 |
| BstDSI | CCRYGG | 1 cut(s) | 274 |
| BstF5I | GGATG | 6 cut(s) | 179, 215, 240, 454, 667, 1404 |
| BstKTI | GATC | 7 cut(s) | 124, 427, 435, 621, 1202, 1281, 1298 |
| BstMAI | GTCTC | 2 cut(s) | 375, 507 |
| BstMBI | GATC | 7 cut(s) | 121, 424, 432, 618, 1199, 1278, 1295 |
| BstMCI | CGRYCG | 1 cut(s) | 1281 |
| BstNSI | RCATGY | 1 cut(s) | 1337 |
| BstV1I | GCAGC | 1 cut(s) | 1249 |
| BstX2I | RGATCY | 4 cut(s) | 432, 618, 1199, 1295 |
| BstYI | RGATCY | 4 cut(s) | 432, 618, 1199, 1295 |
| Bsu15I | ATCGAT | 1 cut(s) | 1454 |
| BsuI | GTATCC | 1 cut(s) | 1220 |
| BsuTUI | ATCGAT | 1 cut(s) | 1454 |
| BtgI | CCRYGG | 1 cut(s) | 274 |
| BtsCI | GGATG | 6 cut(s) | 179, 215, 240, 454, 667, 1404 |
| BtsIMutI | CAGTG | 4 cut(s) | 117, 1111, 1346, 1385 |
| Cac8I | GCNNGC | 1 cut(s) | 1335 |
| Cfr13I | GGNCC | 1 cut(s) | 176 |
| ClaI | ATCGAT | 1 cut(s) | 1454 |
| Csp6I | GTAC | 5 cut(s) | 36, 325, 568, 726, 1158 |
| CviQI | GTAC | 5 cut(s) | 36, 325, 568, 726, 1158 |
| DdeI | CTNAG | 4 cut(s) | 910, 1111, 1154, 1338 |
| DpnI | GATC | 7 cut(s) | 123, 426, 434, 620, 1201, 1280, 1297 |
| DpnII | GATC | 7 cut(s) | 121, 424, 432, 618, 1199, 1278, 1295 |
| EciI | GGCGGA | 1 cut(s) | 1170 |
| Eco130I | CCWWGG | 2 cut(s) | 204, 1246 |
| Eco31I | GGTCTC | 1 cut(s) | 507 |
| Eco32I | GATATC | 1 cut(s) | 973 |
| Eco47I | GGWCC | 1 cut(s) | 176 |
| Eco57I | CTGAAG | 1 cut(s) | 960 |
| Eco88I | CYCGRG | 1 cut(s) | 1328 |
| EcoRV | GATATC | 1 cut(s) | 973 |
| EcoT14I | CCWWGG | 2 cut(s) | 204, 1246 |
| EcoT22I | ATGCAT | 2 cut(s) | 641, 1089 |
| ErhI | CCWWGG | 2 cut(s) | 204, 1246 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 685, 717, 980, 1012 |
| FaqI | GGGAC | 1 cut(s) | 1100 |
| FblI | GTMKAC | 1 cut(s) | 1175 |
| Fnu4HI | GCNGC | 1 cut(s) | 1238 |
| FokI | GGATG | 6 cut(s) | 166, 202, 247, 461, 674, 1411 |
| Fsp4HI | GCNGC | 1 cut(s) | 1238 |
| FspBI | CTAG | 5 cut(s) | 741, 813, 932, 965, 1425 |
| GluI | GCNGC | 1 cut(s) | 1238 |
| HindIII | AAGCTT | 2 cut(s) | 853, 1262 |
| HinfI | GANTC | 7 cut(s) | 268, 491, 529, 602, 652, 806, 880 |
| HphI | GGTGA | 4 cut(s) | 35, 263, 779, 801 |
| Hpy166II | GTNNAC | 2 cut(s) | 726, 1176 |
| Hpy188I | TCNGA | 4 cut(s) | 738, 1139, 1155, 1199 |
| Hpy188III | TCNNGA | 7 cut(s) | 77, 265, 372, 428, 656, 932, 1328 |
| Hpy8I | GTNNAC | 2 cut(s) | 726, 1176 |
| HpyAV | CCTTC | 4 cut(s) | 14, 20, 553, 1018 |
| HpyCH4III | ACNGT | 1 cut(s) | 275 |
| HpyCH4IV | ACGT | 3 cut(s) | 62, 566, 585 |
| HpyCH4V | TGCA | 8 cut(s) | 11, 91, 292, 398, 477, 633, 639, 1087 |
| HpyF3I | CTNAG | 4 cut(s) | 910, 1111, 1154, 1338 |
| HpySE526I | ACGT | 3 cut(s) | 62, 566, 585 |
| Kzo9I | GATC | 7 cut(s) | 121, 424, 432, 618, 1199, 1278, 1295 |
| LmnI | GCTCC | 5 cut(s) | 574, 844, 1095, 1139, 1234 |
| Lsp1109I | GCAGC | 1 cut(s) | 1249 |
| LweI | GCATC | 3 cut(s) | 486, 753, 1006 |
| MaeI | CTAG | 5 cut(s) | 741, 813, 932, 965, 1425 |
| MaeII | ACGT | 3 cut(s) | 62, 566, 585 |
| MaeIII | GTNAC | 3 cut(s) | 387, 1106, 1273 |
| MalI | GATC | 7 cut(s) | 123, 426, 434, 620, 1201, 1280, 1297 |
| MboI | GATC | 7 cut(s) | 121, 424, 432, 618, 1199, 1278, 1295 |
| MboII | GAAGA | 8 cut(s) | 65, 544, 611, 926, 953, 956, 1025, 1363 |
| MflI | RGATCY | 4 cut(s) | 432, 618, 1199, 1295 |
| MluCI | AATT | 6 cut(s) | 187, 197, 296, 520, 871, 1044 |
| MmeI | TCCRAC | 1 cut(s) | 1314 |
| Mph1103I | ATGCAT | 2 cut(s) | 641, 1089 |
| MseI | TTAA | 5 cut(s) | 756, 777, 849, 1266, 1392 |
| MslI | CAYNNNNRTG | 3 cut(s) | 220, 469, 1380 |
| NdeII | GATC | 7 cut(s) | 121, 424, 432, 618, 1199, 1278, 1295 |
| NlaIV | GGNNCC | 1 cut(s) | 315 |
| NmuCI | GTSAC | 1 cut(s) | 1106 |
| NsiI | ATGCAT | 2 cut(s) | 641, 1089 |
| NspI | RCATGY | 1 cut(s) | 1337 |
| OliI | CACNNNNGTG | 1 cut(s) | 1380 |
| PaeI | GCATGC | 1 cut(s) | 1337 |
| PaeR7I | CTCGAG | 1 cut(s) | 1328 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1055 |
| PfeI | GAWTC | 7 cut(s) | 268, 491, 529, 602, 652, 806, 880 |
| PflFI | GACNNNGTC | 2 cut(s) | 959, 1112 |
| PkrI | GCNGC | 1 cut(s) | 1239 |
| Ple19I | CGATCG | 1 cut(s) | 1281 |
| Ppu21I | YACGTR | 1 cut(s) | 567 |
| PsiI | TTATAA | 3 cut(s) | 228, 1007, 1260 |
| Psp1406I | AACGTT | 2 cut(s) | 62, 585 |
| PspN4I | GGNNCC | 1 cut(s) | 315 |
| PspPI | GGNCC | 1 cut(s) | 176 |
| PsuI | RGATCY | 4 cut(s) | 432, 618, 1199, 1295 |
| PsyI | GACNNNGTC | 2 cut(s) | 959, 1112 |
| PvuI | CGATCG | 1 cut(s) | 1281 |
| RsaI | GTAC | 5 cut(s) | 37, 326, 569, 727, 1159 |
| RsaNI | GTAC | 5 cut(s) | 36, 325, 568, 726, 1158 |
| RseI | CAYNNNNRTG | 3 cut(s) | 220, 469, 1380 |
| SaqAI | TTAA | 5 cut(s) | 756, 777, 849, 1266, 1392 |
| SatI | GCNGC | 1 cut(s) | 1238 |
| Sau3AI | GATC | 7 cut(s) | 121, 424, 432, 618, 1199, 1278, 1295 |
| Sau96I | GGNCC | 1 cut(s) | 176 |
| ScaI | AGTACT | 2 cut(s) | 326, 1159 |
| SfaNI | GCATC | 3 cut(s) | 486, 753, 1006 |
| Sfr274I | CTCGAG | 1 cut(s) | 1328 |
| SinI | GGWCC | 1 cut(s) | 176 |
| SlaI | CTCGAG | 1 cut(s) | 1328 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 220, 469, 1380 |
| SmlI | CTYRAG | 4 cut(s) | 320, 428, 656, 1328 |
| SmoI | CTYRAG | 4 cut(s) | 320, 428, 656, 1328 |
| SphI | GCATGC | 1 cut(s) | 1337 |
| Sse9I | AATT | 6 cut(s) | 187, 197, 296, 520, 871, 1044 |
| SsiI | CCGC | 1 cut(s) | 1181 |
| SspI | AATATT | 1 cut(s) | 1069 |
| SspMI | CTAG | 5 cut(s) | 741, 813, 932, 965, 1425 |
| StyI | CCWWGG | 2 cut(s) | 204, 1246 |
| TaaI | ACNGT | 1 cut(s) | 275 |
| TaiI | ACGT | 3 cut(s) | 65, 569, 588 |
| TaqI | TCGA | 4 cut(s) | 373, 1281, 1329, 1454 |
| TasI | AATT | 6 cut(s) | 187, 197, 296, 520, 871, 1044 |
| TatI | WGTACW | 3 cut(s) | 324, 725, 1157 |
| TfiI | GAWTC | 7 cut(s) | 268, 491, 529, 602, 652, 806, 880 |
| Tru1I | TTAA | 5 cut(s) | 756, 777, 849, 1266, 1392 |
| Tru9I | TTAA | 5 cut(s) | 756, 777, 849, 1266, 1392 |
| TscAI | CASTG | 4 cut(s) | 124, 1111, 1346, 1385 |
| TseFI | GTSAC | 1 cut(s) | 1106 |
| TseI | GCWGC | 1 cut(s) | 1237 |
| Tsp45I | GTSAC | 1 cut(s) | 1106 |
| TspDTI | ATGAA | 8 cut(s) | 210, 251, 351, 465, 533, 656, 1037, 1243 |
| TspGWI | ACGGA | 3 cut(s) | 53, 247, 1308 |
| TspRI | CASTG | 4 cut(s) | 124, 1111, 1346, 1385 |
| Tth111I | GACNNNGTC | 2 cut(s) | 959, 1112 |
| VpaK11BI | GGWCC | 1 cut(s) | 176 |
| XapI | RAATTY | 5 cut(s) | 187, 197, 296, 871, 1044 |
| XbaI | TCTAGA | 1 cut(s) | 931 |
| XceI | RCATGY | 1 cut(s) | 1337 |
| XhoI | CTCGAG | 1 cut(s) | 1328 |
| XmiI | GTMKAC | 1 cut(s) | 1175 |
| XspI | CTAG | 5 cut(s) | 741, 813, 932, 965, 1425 |
| ZrmI | AGTACT | 2 cut(s) | 326, 1159 |
| Zsp2I | ATGCAT | 2 cut(s) | 641, 1089 |