Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

32972593 .. 32973222

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0297300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAACCAAAAACCCAGCAACCAACCAAGGATGGAGGAAGTAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAACAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTAGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCAAATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

209

Amino Acids

23.2

Weight (kDa)

9.36

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	3.3e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	335
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	4 cut(s)	82, 265, 546, 625
AclWI	GGATC	3 cut(s)	188, 363, 460
AcsI	RAATTY	1 cut(s)	567
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	2 cut(s)	203, 337
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	220, 473
AleI	CACNNNNGTG	1 cut(s)	555
AluBI	AGCT	5 cut(s)	130, 193, 404, 580, 605
AluI	AGCT	5 cut(s)	130, 193, 404, 580, 605
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	188, 363, 460
Ama87I	CYCGRG	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	477
Asp718I	GGTACC	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	335, 512
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
AxyI	CCTNAGG	1 cut(s)	351
BaeGI	GKGCMC	1 cut(s)	300
BaeI	ACNNNNGTAYC	2 cut(s)	319, 352
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	256, 582
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	26, 424, 530
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	191
BfmI	CTRYAG	2 cut(s)	102, 162
BisI	GCNGC	2 cut(s)	51, 625
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	2 cut(s)	52, 626
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	4 cut(s)	6, 155, 337, 623
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	107, 596
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse21I	CCTNAGG	1 cut(s)	351
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	342, 595
BseSI	GKGCMC	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BshNI	GGYRCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	191
BsmFI	GGGAC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	3 cut(s)	256, 300, 582
Bsp143I	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	4 cut(s)	82, 265, 546, 625
BspCNI	CTCAG	2 cut(s)	343, 594
BspLI	GGNNCC	4 cut(s)	6, 155, 337, 623
BspPI	GGATC	3 cut(s)	188, 363, 460
BspT107I	GGYRCC	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	554
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	3 cut(s)	351, 370, 581
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	6 cut(s)	109, 183, 213, 311, 358, 455
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	2 cut(s)	180, 452
BstYI	RGATCY	2 cut(s)	180, 452
Bsu36I	CCTNAGG	1 cut(s)	351
BtsCI	GGATG	2 cut(s)	37, 292
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	2 cut(s)	202, 336
CviAII	CATG	7 cut(s)	70, 293, 301, 463, 493, 497, 520
CviQI	GTAC	2 cut(s)	202, 336
DdeI	CTNAG	3 cut(s)	351, 370, 581
DpnI	GATC	6 cut(s)	108, 182, 212, 310, 357, 454
DpnII	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	256, 582
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	2 cut(s)	256, 582
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	7 cut(s)	73, 296, 304, 466, 496, 500, 523
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	7 cut(s)	69, 292, 300, 462, 492, 496, 519
Fnu4HI	GCNGC	2 cut(s)	51, 625
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	2 cut(s)	256, 582
Fsp4HI	GCNGC	2 cut(s)	51, 625
GluI	GCNGC	2 cut(s)	51, 625
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	7 cut(s)	73, 296, 304, 466, 496, 500, 523
HinfI	GANTC	4 cut(s)	94, 117, 172, 374
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	335, 512
Hpy166II	GTNNAC	2 cut(s)	244, 279
Hpy188I	TCNGA	4 cut(s)	111, 177, 286, 535
Hpy188III	TCNNGA	4 cut(s)	220, 241, 257, 619
Hpy8I	GTNNAC	2 cut(s)	244, 279
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 383, 496
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
HpyF3I	CTNAG	3 cut(s)	351, 370, 581
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	7 cut(s)	73, 296, 304, 466, 496, 500, 523
KpnI	GGTACC	1 cut(s)	339
Kzo9I	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
LmnI	GCTCC	2 cut(s)	127, 621
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	392
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	41, 515, 548
MalI	GATC	6 cut(s)	108, 182, 212, 310, 357, 454
MboI	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
MboII	GAAGA	5 cut(s)	280, 283, 369, 390, 535
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	2 cut(s)	180, 452
MhlI	GDGCHC	3 cut(s)	256, 300, 582
MluCI	AATT	2 cut(s)	340, 567
MnlI	CCTC	9 cut(s)	29, 131, 171, 267, 346, 492, 496, 533, 589
Mph1103I	ATGCAT	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	366, 420
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	193, 404
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	79, 401, 591
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
NlaIII	CATG	7 cut(s)	73, 296, 304, 466, 496, 500, 523
NlaIV	GGNNCC	4 cut(s)	6, 155, 337, 623
NmuCI	GTSAC	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	4 cut(s)	94, 117, 172, 374
PkrI	GCNGC	2 cut(s)	52, 626
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	6, 155, 337, 623
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	180, 452
PvuII	CAGCTG	2 cut(s)	193, 404
RsaI	GTAC	2 cut(s)	203, 337
RsaNI	GTAC	2 cut(s)	202, 336
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	366, 420
SatI	GCNGC	2 cut(s)	51, 625
Sau3AI	GATC	6 cut(s)	106, 180, 210, 308, 355, 452
Sau96I	GGNCC	2 cut(s)	153, 276
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	3 cut(s)	256, 300, 582
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	2 cut(s)	102, 162
SinI	GGWCC	2 cut(s)	153, 276
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	122, 575
SmoI	CTYRAG	2 cut(s)	122, 575
Sse9I	AATT	2 cut(s)	340, 567
SsiI	CCGC	4 cut(s)	82, 265, 546, 625
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	554
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	213
TasI	AATT	2 cut(s)	340, 567
TauI	GCSGC	1 cut(s)	627
TfiI	GAWTC	4 cut(s)	94, 117, 172, 374
Tru1I	TTAA	2 cut(s)	366, 420
Tru9I	TTAA	2 cut(s)	366, 420
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	281, 473, 536
VpaK11BI	GGWCC	2 cut(s)	153, 276
XapI	RAATTY	1 cut(s)	567
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.