Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

23170654 .. 23171585

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0250300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGTTTCCGGCTGCCTGGAATTGTTAGCCCCAAGAGAAGTCTTACCCGATCTTCATCGAATGCGAACAAGACAGCATCAAAGACCTTAGATATCCCAAAAGGCTACTTTGCGGTCTATGTTGGAGAGAGCCAGAAGAAGCGATTTGTGATTCCAATATCATACTTGAACCAACCTTCATTCATGGATTTGCTGAGTCAAGCTGAAGAAGAATTTGGATACGATCATCCCATGGGCGGTATCACAATCCCTTGCAGTGAGGACACTTTCCTTGATCTCACTTCCAGCTTAAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

99

Amino Acids

10.91

Weight (kDa)

6.55

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	15 - 97	1.7e-24	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	113, 237
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	289
AgsI	TTSAA	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	198, 230
AluBI	AGCT	2 cut(s)	203, 288
AluI	AGCT	2 cut(s)	203, 288
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	18
BciVI	GTATCC	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	289
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	50, 223, 274
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	2 cut(s)	113, 237
BspCNI	CTCAG	1 cut(s)	186
BspTI	CTTAAG	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	50, 223, 274
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	289
BstDEI	CTNAG	2 cut(s)	88, 194
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	53, 226, 277
BstMBI	GATC	3 cut(s)	50, 223, 274
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	212
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
CviAII	CATG	2 cut(s)	184, 232
CviJI	RGCY	6 cut(s)	13, 30, 105, 132, 203, 288
CviKI_1	RGCY	6 cut(s)	13, 30, 105, 132, 203, 288
DdeI	CTNAG	2 cut(s)	88, 194
DpnI	GATC	3 cut(s)	52, 225, 276
DpnII	GATC	3 cut(s)	50, 223, 274
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	16
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	187, 235
FaiI	YATR	4 cut(s)	120, 163, 185, 233
FatI	CATG	2 cut(s)	183, 231
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	14
HapII	CCGG	1 cut(s)	10
Hin1II	CATG	2 cut(s)	187, 235
HinfI	GANTC	2 cut(s)	151, 196
HpaII	CCGG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	88, 194
Hsp92II	CATG	2 cut(s)	187, 235
Kzo9I	GATC	3 cut(s)	50, 223, 274
LpnPI	CCDG	4 cut(s)	3, 23, 30, 146
LweI	GCATC	1 cut(s)	86
MalI	GATC	3 cut(s)	52, 225, 276
MboI	GATC	3 cut(s)	50, 223, 274
MboII	GAAGA	4 cut(s)	45, 148, 218, 221
MluCI	AATT	2 cut(s)	21, 212
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	1 cut(s)	253
MseI	TTAA	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	289
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	3 cut(s)	50, 223, 274
NlaIII	CATG	2 cut(s)	187, 235
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	1 cut(s)	14
Sau3AI	GATC	3 cut(s)	50, 223, 274
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	4 cut(s)	89, 178, 205, 290
SfaNI	GCATC	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	2 cut(s)	21, 212
SsiI	CCGC	2 cut(s)	113, 237
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	1 cut(s)	59
TasI	AATT	2 cut(s)	21, 212
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	45, 168, 172
TspRI	CASTG	1 cut(s)	262
Vha464I	CTTAAG	1 cut(s)	289
XapI	RAATTY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.