Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 162 |
| AciI | CCGC | 1 cut(s) | 92 |
| AclI | AACGTT | 1 cut(s) | 658 |
| AclWI | GGATC | 2 cut(s) | 907, 983 |
| AcsI | RAATTY | 4 cut(s) | 101, 478, 630, 938 |
| AcyI | GRCGYC | 1 cut(s) | 276 |
| AfaI | GTAC | 1 cut(s) | 252 |
| AluBI | AGCT | 2 cut(s) | 256, 520 |
| AluI | AGCT | 2 cut(s) | 256, 520 |
| Alw21I | GWGCWC | 1 cut(s) | 782 |
| Alw26I | GTCTC | 4 cut(s) | 15, 413, 557, 677 |
| AlwI | GGATC | 2 cut(s) | 907, 983 |
| Ama87I | CYCGRG | 1 cut(s) | 554 |
| Aor13HI | TCCGGA | 1 cut(s) | 162 |
| AoxI | GGCC | 1 cut(s) | 727 |
| ApoI | RAATTY | 4 cut(s) | 101, 478, 630, 938 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 750, 782 |
| AseI | ATTAAT | 1 cut(s) | 599 |
| AvaI | CYCGRG | 1 cut(s) | 554 |
| BbsI | GAAGAC | 1 cut(s) | 764 |
| Bbv12I | GWGCWC | 1 cut(s) | 782 |
| BccI | CCATC | 5 cut(s) | 220, 266, 501, 791, 859 |
| BceAI | ACGGC | 1 cut(s) | 734 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 535, 569 |
| BcoDI | GTCTC | 4 cut(s) | 15, 413, 557, 677 |
| BfaI | CTAG | 2 cut(s) | 65, 836 |
| BglII | AGATCT | 1 cut(s) | 460 |
| BmeT110I | CYCGRG | 1 cut(s) | 554 |
| BmrI | ACTGGG | 1 cut(s) | 631 |
| BmsI | GCATC | 1 cut(s) | 815 |
| BmuI | ACTGGG | 1 cut(s) | 631 |
| BpiI | GAAGAC | 1 cut(s) | 764 |
| BpuEI | CTTGAG | 1 cut(s) | 470 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaAI | YACGTR | 1 cut(s) | 250 |
| BsaHI | GRCGYC | 1 cut(s) | 276 |
| BsaI | GGTCTC | 2 cut(s) | 15, 413 |
| BsaJI | CCNNGG | 1 cut(s) | 502 |
| BsaWI | WCCGGW | 1 cut(s) | 162 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 272, 302 |
| Bse1I | ACTGG | 2 cut(s) | 358, 637 |
| BseAI | TCCGGA | 1 cut(s) | 162 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseDI | CCNNGG | 1 cut(s) | 502 |
| BseGI | GGATG | 3 cut(s) | 171, 476, 830 |
| BseMII | CTCAG | 2 cut(s) | 713, 737 |
| BseNI | ACTGG | 2 cut(s) | 358, 637 |
| BseRI | GAGGAG | 1 cut(s) | 280 |
| BsgI | GTGCAG | 1 cut(s) | 45 |
| BshFI | GGCC | 1 cut(s) | 729 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 782 |
| BsiHKCI | CYCGRG | 1 cut(s) | 554 |
| BsiSI | CCGG | 1 cut(s) | 163 |
| BsmAI | GTCTC | 4 cut(s) | 15, 413, 557, 677 |
| BsnI | GGCC | 1 cut(s) | 729 |
| Bso31I | GGTCTC | 2 cut(s) | 15, 413 |
| BsoBI | CYCGRG | 1 cut(s) | 554 |
| Bsp1286I | GDGCHC | 1 cut(s) | 782 |
| Bsp13I | TCCGGA | 1 cut(s) | 162 |
| Bsp143I | GATC | 5 cut(s) | 267, 460, 899, 928, 975 |
| BspACI | CCGC | 1 cut(s) | 92 |
| BspANI | GGCC | 1 cut(s) | 729 |
| BspCNI | CTCAG | 2 cut(s) | 714, 738 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspEI | TCCGGA | 1 cut(s) | 162 |
| BspPI | GGATC | 2 cut(s) | 907, 983 |
| BspTNI | GGTCTC | 2 cut(s) | 15, 413 |
| BsrI | ACTGG | 2 cut(s) | 358, 637 |
| BssECI | CCNNGG | 1 cut(s) | 502 |
| BssMI | GATC | 5 cut(s) | 267, 460, 899, 928, 975 |
| BssNI | GRCGYC | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 1 cut(s) | 502 |
| Bst4CI | ACNGT | 2 cut(s) | 9, 872 |
| Bst6I | CTCTTC | 1 cut(s) | 290 |
| BstACI | GRCGYC | 1 cut(s) | 276 |
| BstBAI | YACGTR | 1 cut(s) | 250 |
| BstC8I | GCNNGC | 1 cut(s) | 436 |
| BstDEI | CTNAG | 3 cut(s) | 321, 722, 746 |
| BstF5I | GGATG | 3 cut(s) | 171, 476, 830 |
| BstKTI | GATC | 5 cut(s) | 270, 463, 902, 931, 978 |
| BstMAI | GTCTC | 4 cut(s) | 15, 413, 557, 677 |
| BstMBI | GATC | 5 cut(s) | 267, 460, 899, 928, 975 |
| BstNSI | RCATGY | 1 cut(s) | 31 |
| BstV2I | GAAGAC | 1 cut(s) | 764 |
| BstX2I | RGATCY | 3 cut(s) | 460, 899, 975 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 644 |
| BstYI | RGATCY | 3 cut(s) | 460, 899, 975 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 729 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtgZI | GCGATG | 1 cut(s) | 134 |
| BtsCI | GGATG | 3 cut(s) | 171, 476, 830 |
| Cac8I | GCNNGC | 1 cut(s) | 436 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 2 cut(s) | 212, 265 |
| Csp6I | GTAC | 1 cut(s) | 251 |
| CviAII | CATG | 2 cut(s) | 28, 926 |
| CviJI | RGCY | 6 cut(s) | 68, 78, 256, 520, 721, 729 |
| CviKI_1 | RGCY | 6 cut(s) | 68, 78, 256, 520, 721, 729 |
| CviQI | GTAC | 1 cut(s) | 251 |
| DdeI | CTNAG | 3 cut(s) | 321, 722, 746 |
| DpnI | GATC | 5 cut(s) | 269, 462, 901, 930, 977 |
| DpnII | GATC | 5 cut(s) | 267, 460, 899, 928, 975 |
| Eam1104I | CTCTTC | 1 cut(s) | 290 |
| EarI | CTCTTC | 1 cut(s) | 290 |
| Eco130I | CCWWGG | 1 cut(s) | 502 |
| Eco31I | GGTCTC | 2 cut(s) | 15, 413 |
| Eco88I | CYCGRG | 1 cut(s) | 554 |
| EcoT14I | CCWWGG | 1 cut(s) | 502 |
| EcoT22I | ATGCAT | 1 cut(s) | 29 |
| ErhI | CCWWGG | 1 cut(s) | 502 |
| FaeI | CATG | 2 cut(s) | 31, 929 |
| FaiI | YATR | 6 cut(s) | 17, 29, 184, 653, 927, 935 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 37, 69 |
| FatI | CATG | 2 cut(s) | 27, 925 |
| FokI | GGATG | 3 cut(s) | 178, 483, 837 |
| FspBI | CTAG | 2 cut(s) | 65, 836 |
| HaeIII | GGCC | 1 cut(s) | 729 |
| HapII | CCGG | 1 cut(s) | 163 |
| HgaI | GACGC | 2 cut(s) | 212, 265 |
| Hin1I | GRCGYC | 1 cut(s) | 276 |
| Hin1II | CATG | 2 cut(s) | 31, 929 |
| HincII | GTYRAC | 1 cut(s) | 280 |
| HindII | GTYRAC | 1 cut(s) | 280 |
| HindIII | AAGCTT | 1 cut(s) | 518 |
| HpaII | CCGG | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 2 cut(s) | 173, 280 |
| Hpy188I | TCNGA | 3 cut(s) | 444, 747, 777 |
| Hpy8I | GTNNAC | 2 cut(s) | 173, 280 |
| Hpy99I | CGWCG | 1 cut(s) | 298 |
| HpyAV | CCTTC | 1 cut(s) | 461 |
| HpyCH4III | ACNGT | 2 cut(s) | 9, 872 |
| HpyCH4IV | ACGT | 2 cut(s) | 249, 658 |
| HpyCH4V | TGCA | 5 cut(s) | 27, 62, 546, 756, 905 |
| HpyF3I | CTNAG | 3 cut(s) | 321, 722, 746 |
| HpySE526I | ACGT | 2 cut(s) | 249, 658 |
| Hsp92I | GRCGYC | 1 cut(s) | 276 |
| Hsp92II | CATG | 2 cut(s) | 31, 929 |
| Kpn2I | TCCGGA | 1 cut(s) | 162 |
| Kzo9I | GATC | 5 cut(s) | 267, 460, 899, 928, 975 |
| LweI | GCATC | 1 cut(s) | 815 |
| MaeI | CTAG | 2 cut(s) | 65, 836 |
| MaeII | ACGT | 2 cut(s) | 249, 658 |
| MalI | GATC | 5 cut(s) | 269, 462, 901, 930, 977 |
| MboI | GATC | 5 cut(s) | 267, 460, 899, 928, 975 |
| MboII | GAAGA | 3 cut(s) | 222, 277, 764 |
| MfeI | CAATTG | 1 cut(s) | 711 |
| MflI | RGATCY | 3 cut(s) | 460, 899, 975 |
| MhlI | GDGCHC | 1 cut(s) | 782 |
| MlyI | GAGTC | 4 cut(s) | 82, 139, 498, 568 |
| MmeI | TCCRAC | 1 cut(s) | 625 |
| MnlI | CCTC | 6 cut(s) | 208, 293, 301, 440, 871, 941 |
| Mph1103I | ATGCAT | 1 cut(s) | 29 |
| MroI | TCCGGA | 1 cut(s) | 162 |
| MseI | TTAA | 4 cut(s) | 537, 599, 624, 813 |
| MspA1I | CMGCKG | 1 cut(s) | 94 |
| MspI | CCGG | 1 cut(s) | 163 |
| MunI | CAATTG | 1 cut(s) | 711 |
| NdeII | GATC | 5 cut(s) | 267, 460, 899, 928, 975 |
| NlaIII | CATG | 2 cut(s) | 31, 929 |
| NsiI | ATGCAT | 1 cut(s) | 29 |
| NspI | RCATGY | 1 cut(s) | 31 |
| PaeR7I | CTCGAG | 1 cut(s) | 554 |
| PfeI | GAWTC | 7 cut(s) | 50, 114, 207, 445, 532, 584, 742 |
| PleI | GAGTC | 4 cut(s) | 82, 139, 497, 567 |
| PpsI | GAGTC | 4 cut(s) | 82, 139, 497, 567 |
| Ppu21I | YACGTR | 1 cut(s) | 250 |
| PshBI | ATTAAT | 1 cut(s) | 599 |
| Psp1406I | AACGTT | 1 cut(s) | 658 |
| PsuI | RGATCY | 3 cut(s) | 460, 899, 975 |
| RsaI | GTAC | 1 cut(s) | 252 |
| RsaNI | GTAC | 1 cut(s) | 251 |
| SaqAI | TTAA | 4 cut(s) | 537, 599, 624, 813 |
| Sau3AI | GATC | 5 cut(s) | 267, 460, 899, 928, 975 |
| SchI | GAGTC | 4 cut(s) | 82, 139, 498, 568 |
| SduI | GDGCHC | 1 cut(s) | 782 |
| SetI | ASST | 9 cut(s) | 130, 252, 258, 285, 432, 522, 661, 852, 952 |
| SfaNI | GCATC | 1 cut(s) | 815 |
| Sfr274I | CTCGAG | 1 cut(s) | 554 |
| SlaI | CTCGAG | 1 cut(s) | 554 |
| SmlI | CTYRAG | 2 cut(s) | 449, 554 |
| SmoI | CTYRAG | 2 cut(s) | 449, 554 |
| SsiI | CCGC | 1 cut(s) | 92 |
| SspMI | CTAG | 2 cut(s) | 65, 836 |
| StyI | CCWWGG | 1 cut(s) | 502 |
| TaaI | ACNGT | 2 cut(s) | 9, 872 |
| TaiI | ACGT | 2 cut(s) | 252, 661 |
| TaqI | TCGA | 3 cut(s) | 122, 270, 555 |
| TfiI | GAWTC | 7 cut(s) | 50, 114, 207, 445, 532, 584, 742 |
| Tru1I | TTAA | 4 cut(s) | 537, 599, 624, 813 |
| Tru9I | TTAA | 4 cut(s) | 537, 599, 624, 813 |
| TspDTI | ATGAA | 1 cut(s) | 376 |
| VspI | ATTAAT | 1 cut(s) | 599 |
| XapI | RAATTY | 4 cut(s) | 101, 478, 630, 938 |
| XceI | RCATGY | 1 cut(s) | 31 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 500 |
| XhoI | CTCGAG | 1 cut(s) | 554 |
| XspI | CTAG | 2 cut(s) | 65, 836 |
| Zsp2I | ATGCAT | 1 cut(s) | 29 |