Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

7038944 .. 7040253

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTGCTTCTTCGTCTCCCTCATCTGGTGGTCGTTGGAACTATGATGTGTTCCTCAATTTTAGAGGCGATGATACTCGCAAGATCTTTGTAGGTCATCTCCACAAAGCTCTTAATCTGGAAGCAATCAACGCATTCATAGACTCTGAAGATCCCCGCAAAGGCAACGACCTTTCAGAGTTGCTCCGGGCTATTGAAGACTCTAGGCTTTCGATAGTAGTTTTCTCCCAAAACTATGCTTCCTCAACATGGTGCTTAAAAGAACTGGTCAAGATACTGGAATGCATGTCCACAAACAAGCAGCTGGTGGTGCCCATTTTTTATGAAGTAGATCCCTCTGATATCCGCAAAGTAAACGGAATGTTTGCGGAGGCTTTTAACAAGTTCGAGGATCTTAGAGCCAAGAGTTGTCGGCTTCTAGGTGACGAACTCGACATACTTAATTTGCTCACCACTGGATGGAGTGCCTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

158

Amino Acids

17.83

Weight (kDa)

5.2

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 133	2.5e-40	TIR domain
TIR_2	PF13676	17 - 118	6.6e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	459
AciI	CCGC	3 cut(s)	157, 346, 368
AclWI	GGATC	3 cut(s)	146, 326, 399
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	4 cut(s)	26, 161, 249, 459
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	2 cut(s)	110, 304
AluI	AGCT	2 cut(s)	110, 304
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	3 cut(s)	146, 326, 399
ApeKI	GCWGC	2 cut(s)	5, 301
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	434, 442
BaeGI	GKGCMC	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	310
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	204, 419
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	2 cut(s)	6, 302
BlsI	GCNGC	2 cut(s)	7, 303
Bme1390I	CCNGG	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 161, 249, 459
Bse1I	ACTGG	3 cut(s)	270, 282, 460
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	4 cut(s)	26, 161, 249, 459
BseNI	ACTGG	3 cut(s)	270, 282, 460
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	26, 161, 249, 459
BsmAI	GTCTC	1 cut(s)	21
BsmBI	CGTCTC	1 cut(s)	21
BsmI	GAATGC	2 cut(s)	134, 287
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	4 cut(s)	84, 151, 331, 391
BspACI	CCGC	3 cut(s)	157, 346, 368
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	146, 326, 399
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	3 cut(s)	270, 282, 460
BssMI	GATC	4 cut(s)	84, 151, 331, 391
BstDEI	CTNAG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	464
BstKTI	GATC	4 cut(s)	87, 154, 334, 394
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	4 cut(s)	84, 151, 331, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 310
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	4 cut(s)	84, 151, 331, 391
BstYI	RGATCY	4 cut(s)	84, 151, 331, 391
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	464
BtsIMutI	CAGTG	1 cut(s)	453
CviAII	CATG	2 cut(s)	249, 286
CviJI	RGCY	8 cut(s)	5, 110, 191, 208, 304, 374, 401, 415
CviKI_1	RGCY	8 cut(s)	5, 110, 191, 208, 304, 374, 401, 415
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	4 cut(s)	86, 153, 333, 393
DpnII	GATC	4 cut(s)	84, 151, 331, 391
Eco32I	GATATC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	343
EcoT22I	ATGCAT	1 cut(s)	287
Esp3I	CGTCTC	1 cut(s)	21
FaeI	CATG	2 cut(s)	252, 289
FaiI	YATR	7 cut(s)	45, 140, 237, 250, 287, 324, 437
FatI	CATG	2 cut(s)	248, 285
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	6, 302
FokI	GGATG	1 cut(s)	471
Fsp4HI	GCNGC	2 cut(s)	6, 302
FspBI	CTAG	2 cut(s)	204, 419
GluI	GCNGC	2 cut(s)	6, 302
HapII	CCGG	1 cut(s)	187
Hin1II	CATG	2 cut(s)	252, 289
HinfI	GANTC	2 cut(s)	143, 200
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	434, 442
Hpy166II	GTNNAC	2 cut(s)	291, 355
Hpy188I	TCNGA	3 cut(s)	148, 178, 340
Hpy188III	TCNNGA	2 cut(s)	119, 271
Hpy8I	GTNNAC	2 cut(s)	291, 355
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 310
HpyF3I	CTNAG	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	252, 289
Kzo9I	GATC	4 cut(s)	84, 151, 331, 391
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	7 cut(s)	12, 104, 200, 251, 263, 290, 441
Lsp1109I	GCAGC	1 cut(s)	313
MaeI	CTAG	2 cut(s)	204, 419
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	86, 153, 333, 393
MboI	GATC	4 cut(s)	84, 151, 331, 391
MboII	GAAGA	3 cut(s)	3, 161, 209
MflI	RGATCY	4 cut(s)	84, 151, 331, 391
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	58, 442
MlyI	GAGTC	2 cut(s)	137, 194
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	7 cut(s)	31, 59, 65, 253, 346, 364, 382
Mph1103I	ATGCAT	1 cut(s)	287
MseI	TTAA	4 cut(s)	114, 257, 378, 441
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	1 cut(s)	187
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	2 cut(s)	134, 287
MwoI	GCNNNNNNNGC	2 cut(s)	131, 310
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	4 cut(s)	84, 151, 331, 391
NlaIII	CATG	2 cut(s)	252, 289
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	422
NsiI	ATGCAT	1 cut(s)	287
NspI	RCATGY	1 cut(s)	289
PctI	GAATGC	2 cut(s)	134, 287
PflMI	CCANNNNNTGG	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	7, 303
PleI	GAGTC	2 cut(s)	137, 194
PpsI	GAGTC	2 cut(s)	137, 194
PspN4I	GGNNCC	1 cut(s)	312
PsrI	GAACNNNNNNTAC	2 cut(s)	420, 452
PsuI	RGATCY	4 cut(s)	84, 151, 331, 391
PvuII	CAGCTG	1 cut(s)	304
SaqAI	TTAA	4 cut(s)	114, 257, 378, 441
SatI	GCNGC	2 cut(s)	6, 302
Sau3AI	GATC	4 cut(s)	84, 151, 331, 391
SchI	GAGTC	2 cut(s)	137, 194
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	5 cut(s)	97, 112, 174, 306, 424
Sse9I	AATT	2 cut(s)	58, 442
SsiI	CCGC	3 cut(s)	157, 346, 368
SspMI	CTAG	2 cut(s)	204, 419
StyD4I	CCNGG	1 cut(s)	186
TaqI	TCGA	3 cut(s)	212, 387, 432
TasI	AATT	2 cut(s)	58, 442
Tru1I	TTAA	4 cut(s)	114, 257, 378, 441
Tru9I	TTAA	4 cut(s)	114, 257, 378, 441
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	5, 301
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	127, 339
TspGWI	ACGGA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	459
XceI	RCATGY	1 cut(s)	289
XspI	CTAG	2 cut(s)	204, 419
Zsp2I	ATGCAT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.