Rorug06G0025500

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
3126296 .. 3127876
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0025500.1

Sequence Viewer

Length: 771 bp
ATGAGTAAGTTCCAGAACTTGTTCGGAGAGGTGACAGTGTTCATCATCATTCTTTCGGTCCAAACCATGAGCAATCCAATCGGCGAGAGTCCTGACCATGACTGGCACGATGCACATGCAACCTTCTACGGCGACATGAATGGAAGCGAAACCATGCAGGGGGCTTGCGGATATGGTGATCTCTTCCAACAAGGTTATGGTCTAGATACAGCAGCTCTAAGCACAACATTGTTCAACAATGGATTAACTTGCGGTGCTTGTTTCGAGATCATGTGCGTCCATGATCCACAATGGTGCATCCCTAATGCAGGCACGATCAAAATTACTGCAACAAATTTTTGTCCACCAAACTGGGCTCAAGGAGGATGGTGCAACCCGCCATACGATCACTTCGACTTGTCCATGCCTATGTTCACAAAAATCGCGCAATACAAAGCTGGAATAGTTCCGGTCAAGTTTCGCCGAGTCCCGTGTGCTAAAACAGGAGGGGTTAAGTTTGAGCTTAAAGGAAACCCCTACTGGATTACTGCTTTGGTTTACAATGTGGGTGGTGCCGGTGATGTTAACGCTGTCAGAATCAAAGGATCTAATTCCGGTTGGCTTCAAATGTCGCGCAATTGGGGCCAAGTTTGGCAGACCAGCGCAGACTTAGTAGGGCAAAGCTTATCATTCCAAGTCACTACCAGTGAAGACAAAACTATTGAGTTTGATAACGCGGCACCAGGGAATTGGCGATTTGGTCAAACATATGAGGGGAATGGTAACTTTTAG

Protein Analysis

256

Amino Acids

28.12

Weight (kDa)

5.27

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 40 - 158 1.5e-06 EXPB1-like domain 1
DPBB_1 PF03330 70 - 153 1.1e-20 Lytic transglycolase
Expansin_C PF01357 164 - 241 1.2e-27 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 551, 718
AccII CGCG 3 cut(s) 425, 613, 716
AciI CCGC 4 cut(s) 168, 252, 377, 716
AclWI GGATC 2 cut(s) 278, 592
AcsI RAATTY 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 159, 308
AgsI TTSAA 2 cut(s) 235, 605
AjnI CCWGG 1 cut(s) 721
AleI CACNNNNGTG 1 cut(s) 292
AluBI AGCT 4 cut(s) 215, 437, 502, 663
AluI AGCT 4 cut(s) 215, 437, 502, 663
AlwI GGATC 2 cut(s) 278, 592
AoxI GGCC 1 cut(s) 622
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 3 cut(s) 427, 615, 644
AspS9I GGNCC 2 cut(s) 58, 622
AsuHPI GGTGA 3 cut(s) 43, 188, 569
AvaII GGWCC 1 cut(s) 58
BanI GGYRCC 2 cut(s) 551, 718
BanII GRGCYC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 145
BcgI CGANNNNNNTGC 4 cut(s) 61, 95, 98, 132
BciT130I CCWGG 1 cut(s) 723
BfaI CTAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 213, 717
BlsI GCNGC 2 cut(s) 214, 718
Bme1390I CCNGG 1 cut(s) 723
Bme18I GGWCC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 58, 622
BmiI GGNNCC 3 cut(s) 553, 623, 720
BmrFI CCNGG 1 cut(s) 723
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 2 cut(s) 100, 306
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 722
BsaWI WCCGGW 2 cut(s) 448, 593
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 308
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 4 cut(s) 107, 356, 524, 684
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 1 cut(s) 722
BseGI GGATG 2 cut(s) 297, 371
BseLI CCNNNNNNNGG 2 cut(s) 159, 308
BseNI ACTGG 4 cut(s) 107, 356, 524, 684
BseXI GCAGC 1 cut(s) 224
Bsh1236I CGCG 3 cut(s) 425, 613, 716
BshFI GGCC 1 cut(s) 624
BshNI GGYRCC 2 cut(s) 551, 718
BsiSI CCGG 3 cut(s) 449, 555, 594
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 2 cut(s) 159, 308
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 6 cut(s) 178, 267, 283, 315, 385, 584
BspACI CCGC 4 cut(s) 168, 252, 377, 716
BspANI GGCC 1 cut(s) 624
BspFNI CGCG 3 cut(s) 425, 613, 716
BspLI GGNNCC 3 cut(s) 553, 623, 720
BspPI GGATC 2 cut(s) 278, 592
BspT107I GGYRCC 2 cut(s) 551, 718
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 4 cut(s) 107, 356, 524, 684
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 722
BssMI GATC 6 cut(s) 178, 267, 283, 315, 385, 584
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 166, 310
BstDEI CTNAG 2 cut(s) 218, 649
BstENI CCTNNNNNAGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 297, 371
BstFNI CGCG 3 cut(s) 425, 613, 716
BstHHI GCGC 3 cut(s) 427, 615, 644
BstKTI GATC 6 cut(s) 181, 270, 286, 318, 388, 587
BstMBI GATC 6 cut(s) 178, 267, 283, 315, 385, 584
BstMWI GCNNNNNNNGC 1 cut(s) 621
BstNI CCWGG 1 cut(s) 723
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 721
BstUI CGCG 3 cut(s) 425, 613, 716
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 696
BstX2I RGATCY 1 cut(s) 584
BstXI CCANNNNNNTGG 2 cut(s) 351, 729
BstYI RGATCY 1 cut(s) 584
BsuRI GGCC 1 cut(s) 624
BtsCI GGATG 2 cut(s) 297, 371
BtsIMutI CAGTG 2 cut(s) 42, 691
Cac8I GCNNGC 2 cut(s) 166, 310
CfoI GCGC 3 cut(s) 427, 615, 644
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 2 cut(s) 58, 622
CseI GACGC 1 cut(s) 265
CspCI CAANNNNNGTGG 2 cut(s) 529, 564
CviAII CATG 8 cut(s) 67, 98, 116, 136, 154, 271, 281, 403
CviJI RGCY 8 cut(s) 164, 215, 356, 437, 502, 601, 624, 663
CviKI_1 RGCY 8 cut(s) 164, 215, 356, 437, 502, 601, 624, 663
DdeI CTNAG 2 cut(s) 218, 649
DpnI GATC 6 cut(s) 180, 269, 285, 317, 387, 586
DpnII GATC 6 cut(s) 178, 267, 283, 315, 385, 584
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 58
EcoNI CCTNNNNNAGG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 721
EcoT38I GRGCYC 1 cut(s) 358
FaeI CATG 8 cut(s) 70, 101, 119, 139, 157, 274, 284, 406
FaqI GGGAC 1 cut(s) 452
FatI CATG 8 cut(s) 66, 97, 115, 135, 153, 270, 280, 402
FauI CCCGC 1 cut(s) 384
FauNDI CATATG 1 cut(s) 748
Fnu4HI GCNGC 2 cut(s) 213, 717
FokI GGATG 2 cut(s) 284, 378
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 2 cut(s) 213, 717
FspBI CTAG 1 cut(s) 203
GlaI GCGC 3 cut(s) 426, 614, 643
GluI GCNGC 2 cut(s) 213, 717
HaeIII GGCC 1 cut(s) 624
HapII CCGG 3 cut(s) 449, 555, 594
HgaI GACGC 1 cut(s) 265
HhaI GCGC 3 cut(s) 427, 615, 644
Hin1II CATG 8 cut(s) 70, 101, 119, 139, 157, 274, 284, 406
Hin6I GCGC 3 cut(s) 425, 613, 642
HinP1I GCGC 3 cut(s) 425, 613, 642
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 3 cut(s) 88, 465, 576
HpaI GTTAAC 1 cut(s) 565
HpaII CCGG 3 cut(s) 449, 555, 594
HphI GGTGA 3 cut(s) 43, 188, 569
Hpy166II GTNNAC 4 cut(s) 344, 414, 538, 565
Hpy188I TCNGA 2 cut(s) 26, 575
Hpy188III TCNNGA 4 cut(s) 13, 92, 203, 265
Hpy8I GTNNAC 4 cut(s) 344, 414, 538, 565
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 7 cut(s) 113, 119, 157, 297, 308, 329, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 621
HpyF3I CTNAG 2 cut(s) 218, 649
Hsp92II CATG 8 cut(s) 70, 101, 119, 139, 157, 274, 284, 406
HspAI GCGC 3 cut(s) 425, 613, 642
KspAI GTTAAC 1 cut(s) 565
Kzo9I GATC 6 cut(s) 178, 267, 283, 315, 385, 584
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 2 cut(s) 100, 306
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 3 cut(s) 31, 676, 761
MalI GATC 6 cut(s) 180, 269, 285, 317, 387, 586
MboI GATC 6 cut(s) 178, 267, 283, 315, 385, 584
MboII GAAGA 2 cut(s) 175, 701
MfeI CAATTG 1 cut(s) 616
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 5 cut(s) 321, 334, 589, 616, 727
MlyI GAGTC 2 cut(s) 97, 474
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 4 cut(s) 22, 356, 479, 745
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 4 cut(s) 245, 492, 504, 564
MslI CAYNNNNRTG 2 cut(s) 292, 407
MspI CCGG 3 cut(s) 449, 555, 594
MspR9I CCNGG 1 cut(s) 723
MunI CAATTG 1 cut(s) 616
MvaI CCWGG 1 cut(s) 723
MvnI CGCG 3 cut(s) 425, 613, 716
MwoI GCNNNNNNNGC 1 cut(s) 621
NdeI CATATG 1 cut(s) 748
NdeII GATC 6 cut(s) 178, 267, 283, 315, 385, 584
NlaIII CATG 8 cut(s) 70, 101, 119, 139, 157, 274, 284, 406
NlaIV GGNNCC 3 cut(s) 553, 623, 720
NmeAIII GCCGAG 1 cut(s) 488
NmuCI GTSAC 2 cut(s) 31, 676
NspI RCATGY 1 cut(s) 119
OliI CACNNNNGTG 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 576
PkrI GCNGC 2 cut(s) 214, 718
PleI GAGTC 2 cut(s) 96, 473
PpsI GAGTC 2 cut(s) 96, 473
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 3 cut(s) 553, 623, 720
PspPI GGNCC 2 cut(s) 58, 622
PsuI RGATCY 1 cut(s) 584
RseI CAYNNNNRTG 2 cut(s) 292, 407
SaqAI TTAA 4 cut(s) 245, 492, 504, 564
SatI GCNGC 2 cut(s) 213, 717
Sau3AI GATC 6 cut(s) 178, 267, 283, 315, 385, 584
Sau96I GGNCC 2 cut(s) 58, 622
SchI GAGTC 2 cut(s) 97, 474
ScrFI CCNGG 1 cut(s) 723
SduI GDGCHC 1 cut(s) 358
SetI ASST 7 cut(s) 33, 125, 196, 217, 439, 504, 665
SfaNI GCATC 2 cut(s) 100, 306
SinI GGWCC 1 cut(s) 58
SmiMI CAYNNNNRTG 2 cut(s) 292, 407
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 5 cut(s) 321, 334, 589, 616, 727
SsiI CCGC 4 cut(s) 168, 252, 377, 716
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 721
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 264, 393
TaqII GACCGA 1 cut(s) 46
TasI AATT 5 cut(s) 321, 334, 589, 616, 727
TauI GCSGC 1 cut(s) 719
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 4 cut(s) 245, 492, 504, 564
Tru9I TTAA 4 cut(s) 245, 492, 504, 564
TscAI CASTG 2 cut(s) 42, 691
TseFI GTSAC 2 cut(s) 31, 676
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 2 cut(s) 31, 676
TspDTI ATGAA 2 cut(s) 31, 152
TspRI CASTG 2 cut(s) 42, 691
VpaK11BI GGWCC 1 cut(s) 58
XagI CCTNNNNNAGG 1 cut(s) 306
XapI RAATTY 1 cut(s) 334
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.