Rorug01G0093600

glutathione s-transferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
15218138 .. 15220459
2322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0093600.1

Sequence Viewer

Length: 1071 bp
ATGCCCAGTCAACTTCTCCTGCGCATCCCTCAAGACCCCTCGAACTTTCGCTTTTCCCAATTGCATCAGAAGACACACTCATGTCACGACAGCCTCTTTGGCAATCGAGCAGCAGTCCCAAAATCCCAAACTCGCTCTAATCAAAATTGGCACCAGAGGAAGGATAGCCCACTAGCTCTTGCTCAAGCTTATCAAACAAAAGACAAGCTCATTGCATCGCATCCCCACTTAGCTGAAGAGGGTGCAATTGAAATAGTCATTATCAAAACTACTGGTGATAAGATACTAAGCCAACCCCTGGCCGACATCGGCGGCAAGGGATTGTTTACTAAGGAAATCGATGAGGCATTGATAAACGGTGACATTGACATTGCTGTACACTCCATGAAAGATGTACCTACTTATTTACCAGACAAGACAATTTTGCCTTGCAACCTTCCCCGTGAGGATGTTCGTGATGCATTTATATGCTTAACTGCATCTTCACTAGCAGAACTGCCAGCTGGAAGTGTTATTGGTACTGCATCGCTTAGAAGAAAGTCGCAGATACTCCATAGATATCCATTGCTTAAAGTAGAGGAGAACTTTCGGGGTAATGTCCAGACTAGGTTAAAGAAACTTAATGAGAAGGTAGTCCAAGCTACCTTATTGGCGTTAGCTGGGCTGAAACGCCTGAATATGGAGGAAAATGTAACTTCGATTCTCTCACTGGATGAAATGCTTCCAGCTGTCGCCCAAGGGGCAATTGGAATTGCCTGCCGGAGCAATGACGATAAAATGGCTGAATATATTGCCAAATTGAATCATGAAGAAACAAGACTAGCAGTTGCATGTGAGAGGGCATTTCTTTTGACCCTGGATGGGTCTTGCCGAACTCCTATTGCTGGATATGCCAGCAAAGATGCCGATGGTAACTGCATATTCAAAGGCTTGGTGGCTTCCCCTGATGGAACCCGCGTACTAGAGACGTCTAGGAAAGGCCTGTATGCTTATAAAGAGATGATGGAGATAGGTAAGGATGCAGGGCAGGAACTTCTTAAACAGGCAGGTCCTGGCTTCTTTGGTTGTTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

356

Amino Acids

39.03

Weight (kDa)

8.05

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Porphobil_deam PF01379 55 - 261 6.8e-75 Porphobilinogen deaminase, dipyromethane cofactor binding domain
Porphobil_deamC PF03900 274 - 347 1e-14 Porphobilinogen deaminase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 993
AatII GACGTC 1 cut(s) 971
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 298
AccII CGCG 1 cut(s) 957
AciI CCGC 2 cut(s) 312, 955
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 255
AcyI GRCGYC 1 cut(s) 968
AfaI GTAC 4 cut(s) 378, 396, 520, 960
AfiI CCNNNNNNNGG 5 cut(s) 160, 298, 679, 861, 884
AgsI TTSAA 3 cut(s) 251, 802, 925
AjnI CCWGG 3 cut(s) 297, 855, 1051
AluBI AGCT 8 cut(s) 176, 188, 208, 233, 503, 641, 659, 728
AluI AGCT 8 cut(s) 176, 188, 208, 233, 503, 641, 659, 728
Alw26I GTCTC 1 cut(s) 959
AlwNI CAGNNNCTG 1 cut(s) 1052
AoxI GGCC 2 cut(s) 300, 979
ApeKI GCWGC 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 80, 112
Asp700I GAANNNNTTC 1 cut(s) 720
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 1049
AsuHPI GGTGA 2 cut(s) 287, 371
AvaII GGWCC 1 cut(s) 1049
BanI GGYRCC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 122
BccI CCATC 4 cut(s) 854, 902, 941, 997
BciT130I CCWGG 3 cut(s) 299, 857, 1053
BcoDI GTCTC 1 cut(s) 959
BfaI CTAG 6 cut(s) 173, 488, 606, 821, 962, 972
BfuAI ACCTGC 1 cut(s) 1037
BglI GCCNNNNNGGC 2 cut(s) 99, 740
BisI GCNGC 2 cut(s) 111, 313
BlsI GCNGC 2 cut(s) 112, 314
Bme1390I CCNGG 3 cut(s) 299, 857, 1053
Bme18I GGWCC 1 cut(s) 1049
BmgT120I GGNCC 1 cut(s) 1049
BmiI GGNNCC 2 cut(s) 152, 952
BmrFI CCNGG 3 cut(s) 299, 857, 1053
BmsI GCATC 9 cut(s) 33, 73, 224, 229, 448, 488, 533, 892, 1009
BpiI GAAGAC 1 cut(s) 77
BpuEI CTTGAG 2 cut(s) 15, 168
Bsa29I ATCGAT 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 968
BsaJI CCNNGG 3 cut(s) 297, 736, 855
Bsc4I CCNNNNNNNGG 5 cut(s) 160, 298, 679, 861, 884
Bse1I ACTGG 3 cut(s) 6, 277, 714
Bse3DI GCAATG 4 cut(s) 210, 369, 563, 772
BseBI CCWGG 3 cut(s) 299, 857, 1053
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 297, 736, 855
BseGI GGATG 6 cut(s) 24, 220, 454, 718, 865, 1024
BseLI CCNNNNNNNGG 5 cut(s) 160, 298, 679, 861, 884
BseMI GCAATG 4 cut(s) 210, 369, 563, 772
BseNI ACTGG 3 cut(s) 6, 277, 714
BseRI GAGGAG 1 cut(s) 593
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 659
Bsh1236I CGCG 1 cut(s) 957
BshFI GGCC 2 cut(s) 302, 981
BshNI GGYRCC 1 cut(s) 150
BshVI ATCGAT 1 cut(s) 339
BsiSI CCGG 1 cut(s) 760
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 5 cut(s) 160, 298, 679, 861, 884
BsmAI GTCTC 1 cut(s) 959
BsmBI CGTCTC 1 cut(s) 959
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 2 cut(s) 302, 981
Bsp1407I TGTACA 1 cut(s) 376
BspACI CCGC 2 cut(s) 312, 955
BspANI GGCC 2 cut(s) 302, 981
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 1 cut(s) 957
BspHI TCATGA 1 cut(s) 805
BspLI GGNNCC 2 cut(s) 152, 952
BspMI ACCTGC 1 cut(s) 1037
BspT107I GGYRCC 1 cut(s) 150
BsrDI GCAATG 4 cut(s) 210, 369, 563, 772
BsrGI TGTACA 1 cut(s) 376
BsrI ACTGG 3 cut(s) 6, 277, 714
BssECI CCNNGG 3 cut(s) 297, 736, 855
BssNI GRCGYC 1 cut(s) 968
BssT1I CCWWGG 1 cut(s) 736
Bst2UI CCWGG 3 cut(s) 299, 857, 1053
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 968
BstAUI TGTACA 1 cut(s) 376
BstC8I GCNNGC 3 cut(s) 501, 757, 895
BstDEI CTNAG 4 cut(s) 229, 287, 330, 530
BstF5I GGATG 6 cut(s) 24, 220, 454, 718, 865, 1024
BstFNI CGCG 1 cut(s) 957
BstHHI GCGC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 959
BstMWI GCNNNNNNNGC 3 cut(s) 99, 740, 890
BstNI CCWGG 3 cut(s) 299, 857, 1053
BstNSI RCATGY 1 cut(s) 834
BstSCI CCNGG 3 cut(s) 297, 855, 1051
BstUI CGCG 1 cut(s) 957
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 77
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 2 cut(s) 302, 981
BsuTUI ATCGAT 1 cut(s) 339
BtgZI GCGATG 2 cut(s) 201, 510
BtsCI GGATG 6 cut(s) 24, 220, 454, 718, 865, 1024
BtsIMutI CAGTG 1 cut(s) 707
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 3 cut(s) 501, 757, 895
CaiI CAGNNNCTG 1 cut(s) 1052
CciI TCATGA 1 cut(s) 805
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 1049
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 4 cut(s) 377, 395, 519, 959
CviAII CATG 4 cut(s) 81, 385, 806, 831
CviQI GTAC 4 cut(s) 377, 395, 519, 959
DdeI CTNAG 4 cut(s) 229, 287, 330, 530
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 736
Eco147I AGGCCT 1 cut(s) 981
Eco32I GATATC 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 1049
Eco57I CTGAAG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 1049
EcoRII CCWGG 3 cut(s) 297, 855, 1051
EcoRV GATATC 1 cut(s) 560
EcoT14I CCWWGG 1 cut(s) 736
EcoT22I ATGCAT 1 cut(s) 463
ErhI CCWWGG 1 cut(s) 736
Esp3I CGTCTC 1 cut(s) 959
FaeI CATG 4 cut(s) 84, 388, 809, 834
FaqI GGGAC 1 cut(s) 101
FatI CATG 4 cut(s) 80, 384, 805, 830
FauI CCCGC 1 cut(s) 962
Fnu4HI GCNGC 2 cut(s) 111, 313
FokI GGATG 6 cut(s) 11, 207, 461, 725, 872, 1031
Fsp4HI GCNGC 2 cut(s) 111, 313
FspBI CTAG 6 cut(s) 173, 488, 606, 821, 962, 972
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 111, 313
GsaI CCCAGC 1 cut(s) 663
HaeIII GGCC 2 cut(s) 302, 981
HapII CCGG 1 cut(s) 760
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 968
Hin1II CATG 4 cut(s) 84, 388, 809, 834
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 2 cut(s) 700, 802
HpaII CCGG 1 cut(s) 760
HphI GGTGA 2 cut(s) 287, 371
Hpy166II GTNNAC 3 cut(s) 11, 327, 379
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 5 cut(s) 32, 86, 455, 601, 806
Hpy8I GTNNAC 3 cut(s) 11, 327, 379
HpyAV CCTTC 3 cut(s) 154, 446, 622
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 968
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 740, 890
HpyF3I CTNAG 4 cut(s) 229, 287, 330, 530
HpySE526I ACGT 1 cut(s) 968
Hsp92I GRCGYC 1 cut(s) 968
Hsp92II CATG 4 cut(s) 84, 388, 809, 834
HspAI GCGC 1 cut(s) 22
LmnI GCTCC 1 cut(s) 762
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 9 cut(s) 33, 73, 224, 229, 448, 488, 533, 892, 1009
MaeI CTAG 6 cut(s) 173, 488, 606, 821, 962, 972
MaeII ACGT 1 cut(s) 968
MaeIII GTNAC 4 cut(s) 83, 359, 691, 911
MboII GAAGA 5 cut(s) 82, 248, 474, 546, 821
MfeI CAATTG 3 cut(s) 59, 246, 744
MluCI AATT 7 cut(s) 59, 145, 246, 420, 744, 750, 797
Mph1103I ATGCAT 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 720
MseI TTAA 6 cut(s) 473, 570, 611, 621, 1038, 1069
MslI CAYNNNNRTG 2 cut(s) 79, 466
MspA1I CMGCKG 2 cut(s) 503, 728
MspI CCGG 1 cut(s) 760
MspR9I CCNGG 3 cut(s) 299, 857, 1053
MunI CAATTG 3 cut(s) 59, 246, 744
MvaI CCWGG 3 cut(s) 299, 857, 1053
MvnI CGCG 1 cut(s) 957
MwoI GCNNNNNNNGC 3 cut(s) 99, 740, 890
NlaIII CATG 4 cut(s) 84, 388, 809, 834
NlaIV GGNNCC 2 cut(s) 152, 952
NmuCI GTSAC 2 cut(s) 83, 359
NsbI TGCGCA 1 cut(s) 23
NsiI ATGCAT 1 cut(s) 463
NspI RCATGY 1 cut(s) 834
PagI TCATGA 1 cut(s) 805
PceI AGGCCT 1 cut(s) 981
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 2 cut(s) 700, 802
PflMI CCANNNNNTGG 1 cut(s) 298
PkrI GCNGC 2 cut(s) 112, 314
PpuMI RGGWCCY 1 cut(s) 1049
PsiI TTATAA 1 cut(s) 993
Psp5II RGGWCCY 1 cut(s) 1049
Psp6I CCWGG 3 cut(s) 297, 855, 1051
PspFI CCCAGC 1 cut(s) 659
PspGI CCWGG 3 cut(s) 297, 855, 1051
PspN4I GGNNCC 2 cut(s) 152, 952
PspPI GGNCC 1 cut(s) 1049
PspPPI RGGWCCY 1 cut(s) 1049
PstNI CAGNNNCTG 1 cut(s) 1052
PvuII CAGCTG 2 cut(s) 503, 728
RsaI GTAC 4 cut(s) 378, 396, 520, 960
RsaNI GTAC 4 cut(s) 377, 395, 519, 959
RseI CAYNNNNRTG 2 cut(s) 79, 466
SaqAI TTAA 6 cut(s) 473, 570, 611, 621, 1038, 1069
SatI GCNGC 2 cut(s) 111, 313
Sau96I GGNCC 1 cut(s) 1049
ScrFI CCNGG 3 cut(s) 299, 857, 1053
SfaNI GCATC 9 cut(s) 33, 73, 224, 229, 448, 488, 533, 892, 1009
SinI GGWCC 1 cut(s) 1049
SmiMI CAYNNNNRTG 2 cut(s) 79, 466
SmlI CTYRAG 2 cut(s) 30, 183
SmoI CTYRAG 2 cut(s) 30, 183
Sse9I AATT 7 cut(s) 59, 145, 246, 420, 744, 750, 797
SseBI AGGCCT 1 cut(s) 981
SsiI CCGC 2 cut(s) 312, 955
SspMI CTAG 6 cut(s) 173, 488, 606, 821, 962, 972
StuI AGGCCT 1 cut(s) 981
StyD4I CCNGG 3 cut(s) 297, 855, 1051
StyI CCWWGG 1 cut(s) 736
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 971
TaqI TCGA 4 cut(s) 41, 106, 339, 698
TasI AATT 7 cut(s) 59, 145, 246, 420, 744, 750, 797
TatI WGTACW 1 cut(s) 376
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 2 cut(s) 700, 802
Tru1I TTAA 6 cut(s) 473, 570, 611, 621, 1038, 1069
Tru9I TTAA 6 cut(s) 473, 570, 611, 621, 1038, 1069
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 2 cut(s) 83, 359
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 83, 359
TspDTI ATGAA 3 cut(s) 401, 729, 822
TspRI CASTG 1 cut(s) 714
Van91I CCANNNNNTGG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 1049
XceI RCATGY 1 cut(s) 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 743
XmnI GAANNNNTTC 1 cut(s) 720
XspI CTAG 6 cut(s) 173, 488, 606, 821, 962, 972
ZraI GACGTC 1 cut(s) 969
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.