Rh5AG192500

glutathione s-transferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
22245629 .. 22248659
3031 bp
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UTR
Exon/CDS
Intron
Rh5AG192500.1

Sequence Viewer

Length: 423 bp
ATGGCGGACGAGGTTATTCTATTGGACGGTTATGTGAGCAGCTTTGGGATGAGGGTCAGAGTAGCTCTGGCCGAGAAGGGAATTAAGAAGATATGGACTACAAAAGGAGAAGAGCAAGAGGCAGCAAAGAAGGAATTCATTGAAGTCCTGAAGGTGTTGGAAGGAGAGCTTGGAGACAAGCCTTATTTCATGGGTGAGAGATTTGGGTTCCTGGACATTGCTCTCATCACATTCTACAGCTGGTTTCATGCTTTTGAGACACTTGGAAACTTCAGTATAGAGGCCGAGTGCCCCAAGCTGATTTCATGGGCCAAGAGGTGCTTGCAGAAGGAGAGTGTTTCAAAATCTCTTGCTGACCAGAAAAAGTATCTTCGTCGAAAAACTTTAAGAAATAGGGAAGTTTTCTTATGTGTCAATTTATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

16.18

Weight (kDa)

8.73

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 34 - 110 8.8e-10 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 39 - 106 1.8e-10 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 2 cut(s) 170, 256
AgsI TTSAA 2 cut(s) 143, 342
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 5 cut(s) 42, 65, 169, 240, 298
AluI AGCT 5 cut(s) 42, 65, 169, 240, 298
Alw26I GTCTC 2 cut(s) 168, 251
AoxI GGCC 3 cut(s) 69, 282, 309
ApeKI GCWGC 2 cut(s) 39, 122
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 309
AsuHPI GGTGA 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 51, 134
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 168, 251
BfmI CTRYAG 1 cut(s) 235
BisI GCNGC 2 cut(s) 40, 123
BlsI GCNGC 2 cut(s) 41, 124
Bme1390I CCNGG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 209
BmrFI CCNGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 212
BseGI GGATG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 293
BseXI GCAGC 2 cut(s) 51, 134
BshFI GGCC 3 cut(s) 71, 284, 311
BsmAI GTCTC 2 cut(s) 168, 251
BsnI GGCC 3 cut(s) 71, 284, 311
Bsp1286I GDGCHC 1 cut(s) 293
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 71, 284, 311
BspLI GGNNCC 1 cut(s) 209
BspQI GCTCTTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 323
BstF5I GGATG 1 cut(s) 54
BstMAI GTCTC 2 cut(s) 168, 251
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 235
BstSLI GKGCMC 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 51, 134
BsuRI GGCC 3 cut(s) 71, 284, 311
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 309
CviAII CATG 3 cut(s) 190, 248, 306
CviJI RGCY 9 cut(s) 42, 65, 71, 169, 181, 240, 284, 298, 311
CviKI_1 RGCY 9 cut(s) 42, 65, 71, 169, 181, 240, 284, 298, 311
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 170, 256
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 210
FaeI CATG 3 cut(s) 193, 251, 309
FaiI YATR 8 cut(s) 33, 94, 191, 249, 278, 307, 409, 421
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 305, 337
FatI CATG 3 cut(s) 189, 247, 305
Fnu4HI GCNGC 2 cut(s) 40, 123
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 2 cut(s) 40, 123
GluI GCNGC 2 cut(s) 40, 123
HaeIII GGCC 3 cut(s) 71, 284, 311
Hin1II CATG 3 cut(s) 193, 251, 309
HphI GGTGA 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 378
HpyAV CCTTC 5 cut(s) 70, 124, 145, 155, 322
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 325
Hsp92II CATG 3 cut(s) 193, 251, 309
LguI GCTCTTC 1 cut(s) 105
LpnPI CCDG 6 cut(s) 53, 161, 197, 224, 226, 371
Lsp1109I GCAGC 2 cut(s) 51, 134
MboII GAAGA 3 cut(s) 100, 122, 362
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 3 cut(s) 81, 134, 415
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 5 cut(s) 4, 45, 112, 274, 309
MroXI GAANNNNTTC 1 cut(s) 134
MseI TTAA 2 cut(s) 84, 386
MspA1I CMGCKG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
NlaIII CATG 3 cut(s) 193, 251, 309
NlaIV GGNNCC 1 cut(s) 209
NmeAIII GCCGAG 2 cut(s) 97, 310
PciSI GCTCTTC 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 2 cut(s) 41, 124
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 309
PvuII CAGCTG 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 84, 386
SatI GCNGC 2 cut(s) 40, 123
Sau96I GGNCC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 212
SduI GDGCHC 1 cut(s) 293
SetI ASST 8 cut(s) 15, 44, 67, 156, 171, 242, 300, 320
SfcI CTRYAG 1 cut(s) 235
Sse9I AATT 3 cut(s) 81, 134, 415
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 210
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 376
TasI AATT 3 cut(s) 81, 134, 415
Tru1I TTAA 2 cut(s) 84, 386
Tru9I TTAA 2 cut(s) 84, 386
TseI GCWGC 2 cut(s) 39, 122
TspDTI ATGAA 4 cut(s) 127, 178, 236, 294
XapI RAATTY 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.