Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

15527505 .. 15528400

Gene Structure 896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTCATGACCAAGTGGTGCTTCTAGGGTTTTGGACTAGTCCTTATGTCATGAGAGTGAAAATTGCTCTGGAGGAGAAAGGAGTCCACTACAAGTATATGGAAGAAGATATTTTCCATAATAAGAGCCCCTTGCTTCTGAAAACCAACCCTCAGCATAAGAAAGTTCCAGTTTTTATCCCTAATGATAAGCCTATATGTGAATCCCTCAATATTCTTCTATACATTGATCAAATAGTTGACTGTGGGAGAAAGATGTGGGCTAGCAAGGGTGCAGAACAAGAAGCAGCGGCGACTGAATTTATAGAATGCTTGAAACTGTTAGAAGTTGAGCTTGGGGAGAAGTCCTTTTTCGAAGGGGAGCATTTCGGCCTCTTGGATATTGCCCTCGTACCATTCTCGAGCAGGTTTTATACATACGAGACTTGTTGCAATTTCAGCGTAGAGAAAGAATGTCCTAAGATAATGGAATGGGTGAAGAGGTGTTACCAGAAGGACAGTGTTTCCAAGAGCATTCCAGACCCATATAAAGTCTATGACTTCGTCTTGGAAGTAAAGAAGATGTATGGAATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

193

Amino Acids

22.32

Weight (kDa)

5.78

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	4e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	8 - 79	5.7e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 78	4.7e-12	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	89 - 164	2.2e-06	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	93 - 161	4.1e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	396
AciI	CCGC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	1 cut(s)	393
AgsI	TTSAA	1 cut(s)	316
AhlI	ACTAGT	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	3 cut(s)	38, 318, 350
AluBI	AGCT	2 cut(s)	334, 576
AluI	AGCT	2 cut(s)	334, 576
Alw26I	GTCTC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	487
AsuII	TTCGAA	1 cut(s)	354
AsuNHI	GCTAGC	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	470, 502
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	299
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	416
BcuI	ACTAGT	1 cut(s)	38
BfaI	CTAG	4 cut(s)	26, 39, 264, 577
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	288, 291
BlsI	GCNGC	2 cut(s)	289, 292
BmeT110I	CYCGRG	1 cut(s)	400
BmtI	GCTAGC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	1 cut(s)	170
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	400
BsmAI	GTCTC	1 cut(s)	416
BsmI	GAATGC	2 cut(s)	314, 513
BsnI	GGCC	1 cut(s)	372
BsoBI	CYCGRG	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	166
BspHI	TCATGA	2 cut(s)	7, 51
BspMI	ACCTGC	1 cut(s)	396
BspOI	GCTAGC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	170
BssMI	GATC	1 cut(s)	229
Bst4CI	ACNGT	3 cut(s)	245, 321, 500
Bst6I	CTCTTC	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	153, 459
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	1 cut(s)	265
CciI	TCATGA	2 cut(s)	7, 51
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	2 cut(s)	8, 52
CviJI	RGCY	7 cut(s)	5, 129, 193, 263, 334, 372, 576
CviKI_1	RGCY	7 cut(s)	5, 129, 193, 263, 334, 372, 576
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	2 cut(s)	153, 459
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	2 cut(s)	11, 55
FalI	AAGNNNNNCTT	5 cut(s)	38, 116, 148, 318, 350
FatI	CATG	2 cut(s)	7, 51
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	288, 291
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	288, 291
FspBI	CTAG	4 cut(s)	26, 39, 264, 577
GluI	GCNGC	2 cut(s)	288, 291
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	11, 55
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	84, 203
HphI	GGTGA	1 cut(s)	487
Hpy166II	GTNNAC	2 cut(s)	88, 241
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	5 cut(s)	8, 52, 71, 400, 518
Hpy8I	GTNNAC	2 cut(s)	88, 241
HpyAV	CCTTC	2 cut(s)	350, 487
HpyCH4III	ACNGT	3 cut(s)	245, 321, 500
HpyCH4V	TGCA	2 cut(s)	275, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpyF3I	CTNAG	2 cut(s)	153, 459
Hsp92II	CATG	2 cut(s)	11, 55
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	5 cut(s)	56, 183, 391, 503, 531
Lsp1109I	GCAGC	1 cut(s)	299
MaeI	CTAG	4 cut(s)	26, 39, 264, 577
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	5 cut(s)	116, 119, 209, 490, 571
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	4 cut(s)	63, 299, 433, 570
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	6 cut(s)	67, 162, 218, 383, 398, 474
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	290
Mva1269I	GAATGC	2 cut(s)	314, 513
MwoI	GCNNNNNNNGC	1 cut(s)	438
NdeII	GATC	1 cut(s)	229
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	2 cut(s)	11, 55
NspV	TTCGAA	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	400
PagI	TCATGA	2 cut(s)	7, 51
PctI	GAATGC	2 cut(s)	314, 513
PfeI	GAWTC	1 cut(s)	203
PflFI	GACNNNGTC	1 cut(s)	542
PkrI	GCNGC	2 cut(s)	289, 292
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PsyI	GACNNNGTC	1 cut(s)	542
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	56
SatI	GCNGC	2 cut(s)	288, 291
Sau3AI	GATC	1 cut(s)	229
SchI	GAGTC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	4 cut(s)	336, 410, 485, 578
Sfr274I	CTCGAG	1 cut(s)	400
SfuI	TTCGAA	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SpeI	ACTAGT	1 cut(s)	38
Sse9I	AATT	4 cut(s)	63, 299, 433, 570
SsiI	CCGC	1 cut(s)	290
SspI	AATATT	1 cut(s)	214
SspMI	CTAG	4 cut(s)	26, 39, 264, 577
TaaI	ACNGT	3 cut(s)	245, 321, 500
TaqI	TCGA	2 cut(s)	354, 401
TasI	AATT	4 cut(s)	63, 299, 433, 570
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	1 cut(s)	287
TspRI	CASTG	1 cut(s)	505
Tth111I	GACNNNGTC	1 cut(s)	542
XapI	RAATTY	1 cut(s)	299
XhoI	CTCGAG	1 cut(s)	400
XspI	CTAG	4 cut(s)	26, 39, 264, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.