Rh5AG192600

glutathione s-transferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
22272460 .. 22274051
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG192600.1

Sequence Viewer

Length: 273 bp
ATGGCGGACGAGTTATATGATGCAGGCAGGAAGATATGGATTACAAAAGGAGAAGAGCTGCAGGCACCAAAGAAGGAATTCATTGAAAGCCTGAAGGTGTTGGAAGGAGAGCTTGGAGACAAGCCTTATTTCATGGGTGAGAGATTTAGGTTCCTGGACATTGCTCTCATCACATTCTACAGCTGGTTTCATGCTTATGAGACACTTGGAAACTTCAGTATAGAGGCCGAGTGCCCCAAGCTGATTTCATGGGCTAAGAGGAGTATGTTCTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

10.59

Weight (kDa)

5.15

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 19 - 87 2.6e-06 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 25 - 87 1.2e-09 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 64
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 2 cut(s) 113, 199
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 4 cut(s) 58, 112, 183, 241
AluI AGCT 4 cut(s) 58, 112, 183, 241
Alw26I GTCTC 2 cut(s) 111, 194
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 111, 194
BfmI CTRYAG 2 cut(s) 59, 178
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 155
BmiI GGNNCC 2 cut(s) 66, 152
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 111, 194
BsnI GGCC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 236
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 66, 152
BspMAI CTGCAG 1 cut(s) 63
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 25, 63
BstDEI CTNAG 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 111, 194
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 2 cut(s) 59, 178
BstSLI GKGCMC 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 227
Cac8I GCNNGC 2 cut(s) 25, 63
CviAII CATG 3 cut(s) 133, 191, 249
CviJI RGCY 8 cut(s) 58, 90, 112, 124, 183, 227, 241, 254
CviKI_1 RGCY 8 cut(s) 58, 90, 112, 124, 183, 227, 241, 254
DdeI CTNAG 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 113, 199
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 136, 194, 252
FaiI YATR 9 cut(s) 16, 18, 37, 134, 192, 198, 221, 250, 266
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 3 cut(s) 132, 190, 248
Fnu4HI GCNGC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 59
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 3 cut(s) 136, 194, 252
HphI GGTGA 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 67, 88, 98
HpyCH4V TGCA 2 cut(s) 23, 61
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 3 cut(s) 136, 194, 252
LguI GCTCTTC 1 cut(s) 48
LpnPI CCDG 7 cut(s) 9, 13, 47, 104, 140, 167, 169
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 1 cut(s) 10
MboII GAAGA 2 cut(s) 43, 65
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 2 cut(s) 217, 252
MroXI GAANNNNTTC 1 cut(s) 77
MslI CAYNNNNRTG 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
NlaIII CATG 3 cut(s) 136, 194, 252
NlaIV GGNNCC 2 cut(s) 66, 152
NmeAIII GCCGAG 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 66, 152
PstI CTGCAG 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 195
SapI GCTCTTC 1 cut(s) 48
SatI GCNGC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 236
SetI ASST 6 cut(s) 60, 99, 114, 152, 185, 243
SfaNI GCATC 1 cut(s) 10
SfcI CTRYAG 2 cut(s) 59, 178
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 1 cut(s) 77
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 153
TasI AATT 1 cut(s) 77
TseI GCWGC 1 cut(s) 58
TspDTI ATGAA 4 cut(s) 70, 121, 179, 237
XapI RAATTY 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.