RLG00000023802

glutathione s-transferase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
28501633 .. 28502316
684 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023802

Sequence Viewer

Length: 684 bp
ATGGCGGACGAGGTTATTCTATTGGACGCTTATGAGAGCATGTTTGGGATGAGGGTCAGAGTAGCTCTGGCCGAGAAGGGAATCAAATATGAGTACAGAGAAGAAGACCTGAGGAACAAGAGCCAACTGCTTCTTAAGATGAACCCGGTCCACAAGAAGATCCCGGTGCTCATCCATAATGGCAAACCAGTCTGTGAATCGCTCATCATTGTGCATTATATTGATGAGGTATGGAAGGATAAGGCTCCTCTGCTTCCTTCTGATCCTTACCAGAGAGCCCAGGCCAGATTCTGGGCCGATTTCATTGATAAGAAGCTATATGATGCAATCAGGAAGATATGGACTGCAAAAGCAGAAGAGCAGGAGGCAGCAAAGGAGGAATTCATTGACGTCCTGAAGGTGTTGGAAGGAGAGCTTGGAGGCAAGCCTTATTTCATGGGTGAGAGATTTGGGTTCCTGGACATTGCTCTCATCACATTCTACAGCTGGTTTCATGCTTATGAGACACTTTGGAACTTCAGTGTAGAGGCCGAGTGCCCCAAGCTGATTTCATGGGCCAAGAGATGCTTGCAGAAGGAGAGTGTTTCGAAGTCTCTTGCTGACCCGAAAAAGGTTTATGAGTATCTTCTTGAGATGAAGAAGAGGCTTGGTGTGGAGCAGTGGTATAAGAAAGTCCTGAAATAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

228

Amino Acids

26.74

Weight (kDa)

8.23

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 5 - 76 1.4e-20 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 7 - 76 3.3e-15 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 13 - 76 1.8e-13 Glutathione S-transferase, N-terminal domain
GST_C PF00043 115 - 192 7.9e-09 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 119 - 188 6.4e-10 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
AccB7I CCANNNNNTGG 1 cut(s) 291
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 154, 257
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 2 cut(s) 416, 502
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 291, 610
AflII CTTAAG 1 cut(s) 134
AjnI CCWGG 2 cut(s) 279, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AluBI AGCT 5 cut(s) 65, 316, 415, 486, 544
AluI AGCT 5 cut(s) 65, 316, 415, 486, 544
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 497, 597
AlwI GGATC 2 cut(s) 154, 257
AlwNI CAGNNNCTG 1 cut(s) 291
AoxI GGCC 5 cut(s) 69, 282, 294, 528, 555
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 380
AspS9I GGNCC 3 cut(s) 148, 294, 555
AsuC2I CCSGG 2 cut(s) 146, 164
AsuHPI GGTGA 1 cut(s) 452
AsuII TTCGAA 1 cut(s) 587
AvaII GGWCC 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 380
BciT130I CCWGG 2 cut(s) 281, 458
BcnI CCSGG 2 cut(s) 146, 164
BcoDI GTCTC 2 cut(s) 497, 597
BfmI CTRYAG 1 cut(s) 481
BfrI CTTAAG 1 cut(s) 134
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
Bme1390I CCNGG 4 cut(s) 146, 164, 281, 458
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 148, 294, 555
BmiI GGNNCC 2 cut(s) 246, 455
BmrFI CCNGG 4 cut(s) 146, 164, 281, 458
BmsI GCATC 2 cut(s) 313, 554
BpiI GAAGAC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 2 cut(s) 146, 164
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 610
Bse1I ACTGG 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 281, 458
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 54, 171
BseLI CCNNNNNNNGG 2 cut(s) 291, 610
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 539
BseXI GCAGC 1 cut(s) 380
BshFI GGCC 5 cut(s) 71, 284, 296, 530, 557
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 146, 164
BslI CCNNNNNNNGG 2 cut(s) 291, 610
BsmAI GTCTC 2 cut(s) 497, 597
BsnI GGCC 5 cut(s) 71, 284, 296, 530, 557
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 3 cut(s) 171, 280, 539
Bsp143I GATC 2 cut(s) 159, 262
BspACI CCGC 1 cut(s) 5
BspANI GGCC 5 cut(s) 71, 284, 296, 530, 557
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 246, 455
BspPI GGATC 2 cut(s) 154, 257
BspQI GCTCTTC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 159, 262
BssNI GRCGYC 1 cut(s) 390
Bst2UI CCWGG 2 cut(s) 281, 458
Bst6I CTCTTC 2 cut(s) 351, 635
BstACI GRCGYC 1 cut(s) 390
BstAFI CTTAAG 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 2 cut(s) 425, 569
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 54, 171
BstKTI GATC 2 cut(s) 162, 265
BstMAI GTCTC 2 cut(s) 497, 597
BstMBI GATC 2 cut(s) 159, 262
BstNI CCWGG 2 cut(s) 281, 458
BstNSI RCATGY 1 cut(s) 43
BstSCI CCNGG 4 cut(s) 144, 162, 279, 456
BstSFI CTRYAG 1 cut(s) 481
BstSLI GKGCMC 1 cut(s) 539
BstV1I GCAGC 1 cut(s) 380
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 110
BsuRI GGCC 5 cut(s) 71, 284, 296, 530, 557
BtsCI GGATG 2 cut(s) 54, 171
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 2 cut(s) 526, 665
Cac8I GCNNGC 2 cut(s) 425, 569
CaiI CAGNNNCTG 1 cut(s) 291
Cfr13I GGNCC 3 cut(s) 148, 294, 555
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 94
CviAII CATG 4 cut(s) 40, 436, 494, 552
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 161, 264
DpnII GATC 2 cut(s) 159, 262
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 351, 635
EarI CTCTTC 2 cut(s) 351, 635
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 416, 502
Eco81I CCTNAGG 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 279, 456
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 4 cut(s) 43, 439, 497, 555
FalI AAGNNNNNCTT 4 cut(s) 399, 431, 551, 583
FatI CATG 4 cut(s) 39, 435, 493, 551
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 2 cut(s) 61, 158
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 369
GluI GCNGC 1 cut(s) 369
HaeIII GGCC 5 cut(s) 71, 284, 296, 530, 557
HapII CCGG 2 cut(s) 146, 164
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 4 cut(s) 43, 439, 497, 555
HinfI GANTC 3 cut(s) 81, 197, 288
HpaII CCGG 2 cut(s) 146, 164
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 59, 262
Hpy188III TCNNGA 4 cut(s) 331, 394, 629, 676
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 6 cut(s) 70, 229, 267, 391, 401, 568
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 4 cut(s) 214, 326, 347, 571
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 4 cut(s) 43, 439, 497, 555
Kzo9I GATC 2 cut(s) 159, 262
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 2 cut(s) 250, 655
Lsp1109I GCAGC 1 cut(s) 380
LweI GCATC 2 cut(s) 313, 554
MaeII ACGT 1 cut(s) 390
MalI GATC 2 cut(s) 161, 264
MboI GATC 2 cut(s) 159, 262
MboII GAAGA 8 cut(s) 113, 116, 169, 346, 368, 617, 649, 652
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 3 cut(s) 171, 280, 539
MluCI AATT 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 384
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 2 cut(s) 209, 498
MspA1I CMGCKG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 2 cut(s) 146, 164
MspR9I CCNGG 4 cut(s) 146, 164, 281, 458
MvaI CCWGG 2 cut(s) 281, 458
NciI CCSGG 2 cut(s) 146, 164
NdeII GATC 2 cut(s) 159, 262
NlaIII CATG 4 cut(s) 43, 439, 497, 555
NlaIV GGNNCC 2 cut(s) 246, 455
NmeAIII GCCGAG 2 cut(s) 97, 556
NspI RCATGY 1 cut(s) 43
NspV TTCGAA 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 351
PfeI GAWTC 3 cut(s) 81, 197, 288
PflMI CCANNNNNTGG 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 456
PkrI GCNGC 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 279, 456
PspGI CCWGG 2 cut(s) 279, 456
PspN4I GGNNCC 2 cut(s) 246, 455
PspPI GGNCC 3 cut(s) 148, 294, 555
PstNI CAGNNNCTG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 486
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 2 cut(s) 209, 498
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 2 cut(s) 159, 262
Sau96I GGNCC 3 cut(s) 148, 294, 555
ScrFI CCNGG 4 cut(s) 146, 164, 281, 458
SduI GDGCHC 3 cut(s) 171, 280, 539
SfaNI GCATC 2 cut(s) 313, 554
SfcI CTRYAG 1 cut(s) 481
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 2 cut(s) 209, 498
SmlI CTYRAG 2 cut(s) 134, 629
SmoI CTYRAG 2 cut(s) 134, 629
Sse9I AATT 1 cut(s) 380
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 4 cut(s) 144, 162, 279, 456
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 587
TasI AATT 1 cut(s) 380
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 3 cut(s) 81, 197, 288
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 526, 665
TseI GCWGC 1 cut(s) 368
TspDTI ATGAA 7 cut(s) 155, 292, 373, 424, 482, 540, 650
TspRI CASTG 2 cut(s) 526, 665
Van91I CCANNNNNTGG 1 cut(s) 291
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 380
XceI RCATGY 1 cut(s) 43
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.