Rorug05G0098200

glutathione s-transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000304
Physical Location & Seq
Reverse (-)
8699057 .. 8702522
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0098200.1

Sequence Viewer

Length: 384 bp
ATGTCTCTGTGCGACGAAAACAACGTGATGGACCTCTCTGCTTTCCGATTGGCGGGGCAAGGCGCCTTCAACCCCGATAGTACCGAGTTTGTGCCTATCATCAGGCCATGTAAACCTGGTGCTTTAGATCGTGTGTCACTCCTCCGTCAAATGGAAAACACTGGACCAAAGGGCACTCACAGTATGACAATCCCCGTTCAGAGGCCACGCCCAATCCGCCCTCCCGAAGGTAGGTGTTTGATTTGTTCCTTGGATGAACACACATCATCTGAATGCCCGTACAACGCTAAAGTCCCAAAGAACGCAACTGTTGGCAGGGGCTGTGACGTATTTTGTAAGAAGAAAGTGTTGTATAATGTGGTGTTTGCTTTGGCTGAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006518 GO:0006575 GO:0006725 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009628 GO:0009635 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016740 GO:0016765 GO:0018973 GO:0018974 GO:0019326 GO:0019439 GO:0019748 GO:0019899 GO:0031090 GO:0031668 GO:0033218 GO:0033554 GO:0034641 GO:0042221 GO:0042277 GO:0042537 GO:0042631 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043603 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046256 GO:0046260 GO:0046263 GO:0046686 GO:0048037 GO:0048046 GO:0048583 GO:0050789 GO:0050896 GO:0051186 GO:0051716 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071944 GO:0072341 GO:0072490 GO:0072491 GO:0080167 GO:0098588 GO:0098754 GO:0098805 GO:0104004 GO:1900750 GO:1901360 GO:1901361 GO:1901564 GO:1901575 GO:1901681 GO:1901700 GO:1901701 GO:2000030
KEGG Pathways
Metabolic & Signaling
ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418
Pfam Domains
Protein Families
GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

127

Amino Acids

14.01

Weight (kDa)

8.52

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 2 cut(s) 53, 217
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 82, 281
AfiI CCNNNNNNNGG 5 cut(s) 52, 151, 201, 227, 231
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 321
AoxI GGCC 2 cut(s) 104, 203
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 31, 164
AvaII GGWCC 2 cut(s) 31, 164
BaeGI GKGCMC 1 cut(s) 176
BanI GGYRCC 1 cut(s) 62
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 382
BfoI RGCGCY 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 31, 164
BmgT120I GGNCC 2 cut(s) 31, 164
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 151, 201, 227, 231
Bse1I ACTGG 1 cut(s) 166
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 259
BseLI CCNNNNNNNGG 5 cut(s) 52, 151, 201, 227, 231
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 1 cut(s) 176
BshFI GGCC 2 cut(s) 106, 205
BshNI GGYRCC 1 cut(s) 62
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 5 cut(s) 52, 151, 201, 227, 231
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 278
BsnI GGCC 2 cut(s) 106, 205
Bsp1286I GDGCHC 1 cut(s) 176
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 2 cut(s) 53, 217
BspANI GGCC 2 cut(s) 106, 205
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 1 cut(s) 127
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 2 cut(s) 182, 310
BstACI GRCGYC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 375
BstENI CCTNNNNNAGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 106, 205
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 159
CaiI CAGNNNCTG 1 cut(s) 321
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 31, 164
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 2 cut(s) 81, 280
CviAII CATG 1 cut(s) 108
CviJI RGCY 4 cut(s) 106, 205, 321, 374
CviKI_1 RGCY 4 cut(s) 106, 205, 321, 374
CviQI GTAC 2 cut(s) 81, 280
DdeI CTNAG 1 cut(s) 375
DinI GGCGCC 1 cut(s) 64
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 31, 164
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 1 cut(s) 111
FaiI YATR 3 cut(s) 109, 185, 354
FaqI GGGAC 1 cut(s) 278
FatI CATG 1 cut(s) 107
FauI CCCGC 1 cut(s) 46
FokI GGATG 1 cut(s) 266
FspBI CTAG 1 cut(s) 382
GlaI GCGC 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 106, 205
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 1 cut(s) 111
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 3 cut(s) 47, 201, 271
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 76, 221
HpyCH4III ACNGT 2 cut(s) 182, 310
HpyCH4IV ACGT 2 cut(s) 24, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 1 cut(s) 375
HpySE526I ACGT 2 cut(s) 24, 327
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 1 cut(s) 111
HspAI GCGC 1 cut(s) 63
KasI GGCGCC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 5 cut(s) 88, 102, 129, 147, 301
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 1 cut(s) 382
MaeII ACGT 2 cut(s) 24, 327
MaeIII GTNAC 2 cut(s) 135, 323
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 63
MnlI CCTC 4 cut(s) 44, 152, 195, 231
MslI CAYNNNNRTG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 278
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 216
NarI GGCGCC 1 cut(s) 63
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 111
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 135, 323
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 278
PluTI GGCGCC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 31, 164
PstNI CAGNNNCTG 1 cut(s) 321
RsaI GTAC 2 cut(s) 82, 281
RsaNI GTAC 2 cut(s) 81, 280
RseI CAYNNNNRTG 1 cut(s) 271
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 2 cut(s) 31, 164
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 176
SetI ASST 6 cut(s) 27, 36, 118, 232, 236, 330
SexAI ACCWGGT 1 cut(s) 115
SfoI GGCGCC 1 cut(s) 64
SinI GGWCC 2 cut(s) 31, 164
SmiMI CAYNNNNRTG 1 cut(s) 271
SsiI CCGC 2 cut(s) 53, 217
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 182, 310
TaiI ACGT 2 cut(s) 27, 330
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 135, 323
Tsp45I GTSAC 2 cut(s) 135, 323
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 31, 164
XagI CCTNNNNNAGG 1 cut(s) 225
XspI CTAG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.