Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Forward (+)

8710475 .. 8711053

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0098400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTGTCCAAAGGGGAAAATAATGCTCTGCATCATCCTCAGTTTGCTGCTCATAGGAGCTGTAGCAGTTACACTAGTCAAAATACTACTCTTCAATCCACCCAACCTCAAAGTCACAGTCACCAATGCCTCTTTGGCTCAATTCAATCTCAGCAACAATAATGACACTCTTTTCTACAAGATTGCCCTCACCATCACCACCAGAAACCTCAACCATCCTGCTAATAAAGATGTGCTCTACAGTAGAATCGAAGCCATTGCCAAATACAGGACGGAGAGCTTTGCTAAGTGGACTTTGAGTTCGCCGCTGGCGCCATTCAAACAACACCGCAAGAGCACGACGATTCTGCAATATCCAGCTATTCAAGGGCAACAACCGGTGAGGTTTTCCAAAAGTGAACTCTCCCAGTTTAACCGGGAGAGTGTCATTGGCGTTTACAGTATTGAAGTGGTGGTTCTTATGCAGATAAAAGGAAACACAAAGTCTTACAATTGTGAATGGATATGCACGCTGAAGATTCCTATGGGTTCTAATCAAACACCTTTCGAGGCTACCCGGTGTTTTAGAACTAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

192

Amino Acids

21.7

Weight (kDa)

9.81

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	2 cut(s)	305, 328
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgeI	ACCGGT	1 cut(s)	376
AgsI	TTSAA	5 cut(s)	94, 145, 319, 365, 446
AhlI	ACTAGT	1 cut(s)	73
AloI	GAACNNNNNNTCC	2 cut(s)	283, 315
AluBI	AGCT	3 cut(s)	59, 279, 359
AluI	AGCT	3 cut(s)	59, 279, 359
Alw21I	GWGCWC	2 cut(s)	237, 338
ApeKI	GCWGC	1 cut(s)	46
ArsI	GACNNNNNNTTYG	4 cut(s)	102, 134, 283, 315
AsiGI	ACCGGT	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	313
AsuC2I	CCSGG	2 cut(s)	416, 556
AsuHPI	GGTGA	4 cut(s)	112, 181, 187, 391
BanI	GGYRCC	1 cut(s)	310
Bbv12I	GWGCWC	2 cut(s)	237, 338
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	2 cut(s)	200, 222
BcgI	CGANNNNNNTGC	4 cut(s)	239, 273, 328, 362
BcnI	CCSGG	2 cut(s)	416, 556
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	2 cut(s)	74, 577
BfmI	CTRYAG	2 cut(s)	60, 238
BfoI	RGCGCY	1 cut(s)	314
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	47, 305
BlsI	GCNGC	2 cut(s)	48, 306
Bme1390I	CCNGG	2 cut(s)	416, 556
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	416, 556
BmrI	ACTGGG	1 cut(s)	400
BmsI	GCATC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	416, 556
BsaHI	GRCGYC	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	376
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	1 cut(s)	255
BseGI	GGATG	2 cut(s)	33, 214
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	2 cut(s)	52, 163
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	310
BshTI	ACCGGT	1 cut(s)	376
BsiHKAI	GWGCWC	2 cut(s)	237, 338
BsiSI	CCGG	3 cut(s)	377, 415, 556
BslI	CCNNNNNNNGG	1 cut(s)	267
Bsp1286I	GDGCHC	2 cut(s)	237, 338
BspACI	CCGC	2 cut(s)	305, 328
BspCNI	CTCAG	2 cut(s)	51, 162
BspLI	GGNNCC	1 cut(s)	312
BspT107I	GGYRCC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	406
BssAI	RCCGGY	1 cut(s)	376
BssNI	GRCGYC	1 cut(s)	311
Bst4CI	ACNGT	3 cut(s)	118, 242, 440
Bst6I	CTCTTC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	309, 509
BstDEI	CTNAG	3 cut(s)	38, 149, 285
BstF5I	GGATG	2 cut(s)	33, 214
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 310
BstSCI	CCNGG	2 cut(s)	414, 554
BstSFI	CTRYAG	2 cut(s)	60, 238
BstV1I	GCAGC	1 cut(s)	33
BtsCI	GGATG	2 cut(s)	33, 214
Cac8I	GCNNGC	2 cut(s)	309, 509
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	376
CspAI	ACCGGT	1 cut(s)	376
CviJI	RGCY	6 cut(s)	59, 137, 254, 279, 359, 551
CviKI_1	RGCY	6 cut(s)	59, 137, 254, 279, 359, 551
DdeI	CTNAG	3 cut(s)	38, 149, 285
DinI	GGCGCC	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	533
EgeI	GGCGCC	1 cut(s)	312
EheI	GGCGCC	1 cut(s)	312
FaiI	YATR	4 cut(s)	53, 461, 505, 524
Fnu4HI	GCNGC	2 cut(s)	47, 305
FokI	GGATG	2 cut(s)	20, 201
Fsp4HI	GCNGC	2 cut(s)	47, 305
FspBI	CTAG	2 cut(s)	74, 577
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	2 cut(s)	47, 305
HaeII	RGCGCY	1 cut(s)	314
HapII	CCGG	3 cut(s)	377, 415, 556
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	311
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	3 cut(s)	246, 343, 517
HpaII	CCGG	3 cut(s)	377, 415, 556
HphI	GGTGA	4 cut(s)	112, 181, 187, 391
Hpy166II	GTNNAC	3 cut(s)	291, 398, 436
Hpy8I	GTNNAC	3 cut(s)	291, 398, 436
Hpy99I	CGWCG	1 cut(s)	343
HpyCH4III	ACNGT	3 cut(s)	118, 242, 440
HpyCH4V	TGCA	4 cut(s)	30, 349, 463, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 310
HpyF3I	CTNAG	3 cut(s)	38, 149, 285
Hsp92I	GRCGYC	1 cut(s)	311
HspAI	GCGC	1 cut(s)	311
KasI	GGCGCC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	9 cut(s)	214, 231, 253, 293, 369, 390, 419, 428, 569
Lsp1109I	GCAGC	1 cut(s)	33
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	2 cut(s)	74, 577
MaeIII	GTNAC	3 cut(s)	67, 112, 118
MboII	GAAGA	2 cut(s)	82, 526
MfeI	CAATTG	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	237, 338
MluCI	AATT	2 cut(s)	140, 490
Mly113I	GGCGCC	1 cut(s)	311
MnlI	CCTC	7 cut(s)	47, 116, 139, 197, 218, 375, 541
MseI	TTAA	1 cut(s)	411
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	3 cut(s)	377, 415, 556
MspR9I	CCNGG	2 cut(s)	416, 556
MunI	CAATTG	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	134, 310
NarI	GGCGCC	1 cut(s)	311
NciI	CCSGG	2 cut(s)	416, 556
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	112, 118
PfeI	GAWTC	3 cut(s)	246, 343, 517
PinAI	ACCGGT	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	48, 306
PluTI	GGCGCC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	312
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	47, 305
ScrFI	CCNGG	2 cut(s)	416, 556
SduI	GDGCHC	2 cut(s)	237, 338
SetI	ASST	7 cut(s)	61, 108, 210, 281, 361, 386, 544
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	2 cut(s)	60, 238
SfoI	GGCGCC	1 cut(s)	312
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	2 cut(s)	140, 490
SsiI	CCGC	2 cut(s)	305, 328
SspDI	GGCGCC	1 cut(s)	310
SspMI	CTAG	2 cut(s)	74, 577
StyD4I	CCNGG	2 cut(s)	414, 554
TaaI	ACNGT	3 cut(s)	118, 242, 440
TaqI	TCGA	2 cut(s)	249, 546
TasI	AATT	2 cut(s)	140, 490
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	3 cut(s)	246, 343, 517
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	2 cut(s)	112, 118
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	2 cut(s)	112, 118
TspGWI	ACGGA	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XspI	CTAG	2 cut(s)	74, 577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.