Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

8708544 .. 8709806

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0098300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCGTTGGGCAAGGTGAAGGAGCTCGTCTCGTCCAATCCGGTAGTCATCTTCAGCAACAAGCTTTGTCCCTACTGCGTGTGCGTGAAGCAGCTCTTCGTTCTAAAATTGGGAGCCCAGTACAAGGCCATTGAATTGGACCAAGAGAGTGATGGTAGTGAGATACAATCGGCGCTTGCTGAGTGGACTGGACAGCATACTCTGCCCAATGTTTTCGTTGGCGGAAACCACATTGGTGATTGTGACACAACCTGGGATCTGCACAAGGAAGGAAAACTGGTCCCTCTGCTCACTGAAGCTGGAGTTGTTGCCAAATTACAGGAGTTGGAAATAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

112

Amino Acids

12.2

Weight (kDa)

5.04

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	15 - 78	5.1e-15	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	264
AcuI	CTGAAG	2 cut(s)	37, 315
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	251
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	5 cut(s)	25, 64, 94, 299, 336
AluI	AGCT	5 cut(s)	25, 64, 94, 299, 336
Alw21I	GWGCWC	1 cut(s)	27
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	139, 280
AsuHPI	GGTGA	2 cut(s)	28, 248
AvaII	GGWCC	2 cut(s)	139, 280
BanII	GRGCYC	2 cut(s)	27, 118
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	176
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	139, 280
BmgT120I	GGNCC	2 cut(s)	139, 280
BmiI	GGNNCC	2 cut(s)	115, 282
BmrFI	CCNGG	1 cut(s)	253
BmrI	ACTGGG	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	112
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	3 cut(s)	118, 193, 282
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	3 cut(s)	118, 193, 282
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	54, 266
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	2 cut(s)	54, 266
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	27, 118
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	115, 282
BspPI	GGATC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	101
BsrI	ACTGG	3 cut(s)	118, 193, 282
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	139, 280
Csp6I	GTAC	1 cut(s)	121
CviJI	RGCY	7 cut(s)	25, 64, 94, 116, 128, 299, 336
CviKI_1	RGCY	7 cut(s)	25, 64, 94, 116, 128, 299, 336
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	2 cut(s)	27, 118
Eco47I	GGWCC	2 cut(s)	139, 280
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	37, 315
EcoICRI	GAGCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	251
EcoT38I	GRGCYC	2 cut(s)	27, 118
Esp3I	CGTCTC	1 cut(s)	34
FaiI	YATR	1 cut(s)	198
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	2 cut(s)	54, 266
Fnu4HI	GCNGC	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	27, 118
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	337
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	92
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	62
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	28, 248
Hpy166II	GTNNAC	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	2 cut(s)	13, 263
HpyCH4V	TGCA	1 cut(s)	262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	180
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	22, 113
LpnPI	CCDG	8 cut(s)	54, 131, 174, 238, 263, 265, 285, 305
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	337
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	43, 88
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	27, 118
MluCI	AATT	3 cut(s)	107, 134, 314
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	202
NdeII	GATC	1 cut(s)	256
NlaIV	GGNNCC	2 cut(s)	115, 282
NmuCI	GTSAC	1 cut(s)	242
OliI	CACNNNNGTG	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	251
PspN4I	GGNNCC	2 cut(s)	115, 282
PspPI	GGNCC	2 cut(s)	139, 280
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	27
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	2 cut(s)	139, 280
ScrFI	CCNGG	1 cut(s)	253
SduI	GDGCHC	2 cut(s)	27, 118
SetI	ASST	7 cut(s)	18, 27, 66, 96, 254, 301, 338
SinI	GGWCC	2 cut(s)	139, 280
SmiMI	CAYNNNNRTG	1 cut(s)	234
Sse9I	AATT	3 cut(s)	107, 134, 314
SsiI	CCGC	1 cut(s)	222
SspMI	CTAG	1 cut(s)	337
SstI	GAGCTC	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	251
TasI	AATT	3 cut(s)	107, 134, 314
TatI	WGTACW	1 cut(s)	120
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	242
TspRI	CASTG	1 cut(s)	298
VpaK11BI	GGWCC	2 cut(s)	139, 280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.