Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007802.1

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

30578 .. 31349

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007802.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atggcggataagattgttttgttggatttctggatcagcccttttgggatgagggtcaagatcgctctagcggagaaaggcatcgagtacgagtacaaggaccaggacttgatgaacaagaggccactcttgctgcagtccaatccagttcacaagaagatcccggttctcattcataatggcaaacccatctgtgagtccctcattgtcctcgagtacattgacgagtttgttgattgtgcgactaaggtatggacaaccaaaggagatgaacatgaagcagcaaagaagggcttccttgaatcaattaaattgctagtaggagagcttggagacaagcctttgtttgggggtgagacccttggattcgttgacgtctcactagtgcctttctatagctggctttccgtgtgtgaaaagtttggcaacttcagtgttgaggaagagagtccaaacttcattgcttgggcgaagaggtgtttgcagaaggagagcgtgtcccggtctcttcctgaccaggataaggtctatgactttgttgtgcaattgaggaaacttaaaggcttggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

190

Amino Acids

21.66

Weight (kDa)

5.53

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
AciI	CCGC	2 cut(s)	5, 71
AclWI	GGATC	2 cut(s)	41, 154
AcuI	CTGAAG	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	3 cut(s)	89, 95, 218
AfiI	CCNNNNNNNGG	2 cut(s)	347, 523
AgsI	TTSAA	1 cut(s)	302
AhlI	ACTAGT	1 cut(s)	382
AjnI	CCWGG	2 cut(s)	102, 516
AluBI	AGCT	2 cut(s)	328, 399
AluI	AGCT	2 cut(s)	328, 399
Alw26I	GTCTC	4 cut(s)	327, 350, 382, 510
AlwI	GGATC	2 cut(s)	41, 154
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	133, 281
Asp700I	GAANNNNTTC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	100
AsuC2I	CCSGG	2 cut(s)	164, 502
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	120, 293
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	104, 518
BcnI	CCSGG	2 cut(s)	164, 502
BcoDI	GTCTC	4 cut(s)	327, 350, 382, 510
BcuI	ACTAGT	1 cut(s)	382
BfaI	CTAG	3 cut(s)	68, 317, 383
BfmI	CTRYAG	2 cut(s)	134, 394
BisI	GCNGC	2 cut(s)	134, 282
BlsI	GCNGC	2 cut(s)	135, 283
Bme1390I	CCNGG	4 cut(s)	104, 164, 502, 518
Bme18I	GGWCC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	100
BmrFI	CCNGG	4 cut(s)	104, 164, 502, 518
BmsI	GCATC	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	164, 502
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	350, 510
BsaJI	CCNNGG	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 523
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	2 cut(s)	104, 518
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	347, 523
BseMI	GCAATG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	120, 293
BshFI	GGCC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	164, 502
BslFI	GGGAC	2 cut(s)	184, 484
BslI	CCNNNNNNNGG	2 cut(s)	347, 523
BsmAI	GTCTC	4 cut(s)	327, 350, 382, 510
BsmBI	CGTCTC	1 cut(s)	382
BsmFI	GGGAC	2 cut(s)	184, 484
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	2 cut(s)	350, 510
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	33, 60, 159
BspACI	CCGC	2 cut(s)	5, 71
BspANI	GGCC	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	41, 154
BspTNI	GGTCTC	2 cut(s)	350, 510
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	33, 60, 159
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	104, 518
Bst6I	CTCTTC	3 cut(s)	438, 467, 513
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	36, 63, 162
BstMAI	GTCTC	4 cut(s)	327, 350, 382, 510
BstMBI	GATC	3 cut(s)	33, 60, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	2 cut(s)	104, 518
BstSCI	CCNGG	4 cut(s)	102, 162, 500, 516
BstSFI	CTRYAG	2 cut(s)	134, 394
BstV1I	GCAGC	2 cut(s)	120, 293
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	401
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	88, 94, 217
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	8 cut(s)	39, 124, 294, 328, 340, 399, 403, 564
CviKI_1	RGCY	8 cut(s)	39, 124, 294, 328, 340, 399, 403, 564
CviQI	GTAC	3 cut(s)	88, 94, 217
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	3 cut(s)	35, 62, 161
DpnII	GATC	3 cut(s)	33, 60, 159
Eam1104I	CTCTTC	3 cut(s)	438, 467, 513
EarI	CTCTTC	3 cut(s)	438, 467, 513
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	361
Eco31I	GGTCTC	2 cut(s)	350, 510
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	415
Eco88I	CYCGRG	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	102, 516
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	382
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	177, 253, 276, 396, 531
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	2 cut(s)	184, 484
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	134, 282
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	134, 282
FspBI	CTAG	3 cut(s)	68, 317, 383
GluI	GCNGC	2 cut(s)	134, 282
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	164, 502
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	278
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	4 cut(s)	197, 302, 366, 448
HpaII	CCGG	2 cut(s)	164, 502
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	151, 373
Hpy188III	TCNNGA	3 cut(s)	31, 58, 512
Hpy8I	GTNNAC	2 cut(s)	151, 373
HpyAV	CCTTC	2 cut(s)	283, 481
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	3 cut(s)	136, 484, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	33, 60, 159
Lsp1109I	GCAGC	2 cut(s)	120, 293
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	3 cut(s)	68, 317, 383
MaeII	ACGT	1 cut(s)	375
MalI	GATC	3 cut(s)	35, 62, 161
MboI	GATC	3 cut(s)	33, 60, 159
MboII	GAAGA	4 cut(s)	169, 455, 484, 500
MfeI	CAATTG	1 cut(s)	545
MflI	RGATCY	1 cut(s)	159
MluCI	AATT	3 cut(s)	306, 311, 545
MlyI	GAGTC	2 cut(s)	206, 457
MnlI	CCTC	7 cut(s)	45, 114, 212, 221, 433, 468, 543
MroXI	GAANNNNTTC	1 cut(s)	293
MseI	TTAA	2 cut(s)	309, 558
MspI	CCGG	2 cut(s)	164, 502
MspR9I	CCNGG	4 cut(s)	104, 164, 502, 518
MunI	CAATTG	1 cut(s)	545
MvaI	CCWGG	2 cut(s)	104, 518
MwoI	GCNNNNNNNGC	1 cut(s)	130
NciI	CCSGG	2 cut(s)	164, 502
NdeII	GATC	3 cut(s)	33, 60, 159
NlaIII	CATG	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	302, 366
PkrI	GCNGC	2 cut(s)	135, 283
PleI	GAGTC	2 cut(s)	205, 456
PpsI	GAGTC	2 cut(s)	205, 456
Psp6I	CCWGG	2 cut(s)	102, 516
PspGI	CCWGG	2 cut(s)	102, 516
PspPI	GGNCC	1 cut(s)	100
PspXI	VCTCGAGB	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	3 cut(s)	89, 95, 218
RsaNI	GTAC	3 cut(s)	88, 94, 217
SaqAI	TTAA	2 cut(s)	309, 558
SatI	GCNGC	2 cut(s)	134, 282
Sau3AI	GATC	3 cut(s)	33, 60, 159
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	2 cut(s)	206, 457
ScrFI	CCNGG	4 cut(s)	104, 164, 502, 518
SetI	ASST	6 cut(s)	252, 330, 378, 401, 479, 528
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	2 cut(s)	134, 394
Sfr274I	CTCGAG	1 cut(s)	212
SinI	GGWCC	1 cut(s)	100
SlaI	CTCGAG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SpeI	ACTAGT	1 cut(s)	382
Sse9I	AATT	3 cut(s)	306, 311, 545
SsiI	CCGC	2 cut(s)	5, 71
SspMI	CTAG	3 cut(s)	68, 317, 383
StyD4I	CCNGG	4 cut(s)	102, 162, 500, 516
StyI	CCWWGG	1 cut(s)	361
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	2 cut(s)	84, 213
TasI	AATT	3 cut(s)	306, 311, 545
TatI	WGTACW	2 cut(s)	93, 216
TfiI	GAWTC	2 cut(s)	302, 366
Tru1I	TTAA	2 cut(s)	309, 558
Tru9I	TTAA	2 cut(s)	309, 558
TscAI	CASTG	1 cut(s)	439
TseI	GCWGC	2 cut(s)	133, 281
TspDTI	ATGAA	5 cut(s)	128, 164, 285, 291, 448
TspGWI	ACGGA	1 cut(s)	397
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	3 cut(s)	68, 317, 383
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.