Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007802.1

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

28283 .. 29046

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007802.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggcagatgaggttgcgttgttggatttctggccgagtccatttgggatgaggctgaggatcgctctagctgagaaaagcatcaagcacgagtacaaggaggaagacctcaagaacaagagcccacttttgctgaagtcgaacccggttcacaagaagatcccggttctcattcacaatggcaaacccatcagtgaatccctcattgccctccagtacattgacgaaacttggaatgacaacgctccactgttgccctctgatccttatctcagatcccaagccaggttctgggccgaatttgttgacaaaaaggttgctgattttgggaggaaggtatgcatgaccaaaggagaagaacaggaggcagcaaagaaaggcctacttgattgcattgaactactggaaggagaacttggagagaagccttactttgggggtgagacccttggtttcgtggacgtgacactcgttccctggtatggttggctttccgtgtacgagaagtttggcaacttcagtatagaggcagagcacccagtattcatagcttgggggaagaggtgtatgcagaagaagagtgtgtccaagtctcttcctgaccagcaaaagctctatgacttcgttgtgcaattcatggaaaaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

216

Amino Acids

24.76

Weight (kDa)

5.89

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	291
AclWI	GGATC	4 cut(s)	68, 154, 257, 270
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	155, 502
AfaI	GTAC	3 cut(s)	95, 218, 500
AfiI	CCNNNNNNNGG	4 cut(s)	285, 291, 434, 482
AgsI	TTSAA	1 cut(s)	398
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	284, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	3 cut(s)	71, 551, 613
AluI	AGCT	3 cut(s)	71, 551, 613
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	437, 597
AlwI	GGATC	4 cut(s)	68, 154, 257, 270
AlwNI	CAGNNNCTG	1 cut(s)	291
AoxI	GGCC	3 cut(s)	32, 294, 379
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	2 cut(s)	146, 164
AsuHPI	GGTGA	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	125
BauI	CACGAG	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	380
BccI	CCATC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	286, 478
BcnI	CCSGG	2 cut(s)	146, 164
BcoDI	GTCTC	2 cut(s)	437, 597
BfaI	CTAG	1 cut(s)	68
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	4 cut(s)	146, 164, 286, 478
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	294
BmrFI	CCNGG	4 cut(s)	146, 164, 286, 478
BmrI	ACTGGG	1 cut(s)	533
BmsI	GCATC	1 cut(s)	90
BmuI	ACTGGG	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	2 cut(s)	146, 164
BsaBI	GATNNNNATC	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	448, 476
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 291, 434, 482
Bse1I	ACTGG	3 cut(s)	214, 408, 539
Bse3DI	GCAATG	1 cut(s)	204
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	286, 478
BseDI	CCNNGG	2 cut(s)	448, 476
BseGI	GGATG	1 cut(s)	54
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	4 cut(s)	285, 291, 434, 482
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	3 cut(s)	47, 63, 286
BseNI	ACTGG	3 cut(s)	214, 408, 539
BseXI	GCAGC	1 cut(s)	380
BshFI	GGCC	3 cut(s)	34, 296, 381
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	146, 164
BslI	CCNNNNNNNGG	4 cut(s)	285, 291, 434, 482
BsmAI	GTCTC	2 cut(s)	437, 597
BsnI	GGCC	3 cut(s)	34, 296, 381
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	125, 537
Bsp143I	GATC	4 cut(s)	60, 159, 262, 275
BspANI	GGCC	3 cut(s)	34, 296, 381
BspCNI	CTCAG	3 cut(s)	48, 64, 285
BspPI	GGATC	4 cut(s)	68, 154, 257, 270
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	3 cut(s)	214, 408, 539
BssECI	CCNNGG	2 cut(s)	448, 476
BssMI	GATC	4 cut(s)	60, 159, 262, 275
BssSI	CACGAG	1 cut(s)	89
BssT1I	CCWWGG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	89
Bst2UI	CCWGG	2 cut(s)	286, 478
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	3 cut(s)	554, 572, 600
BstDEI	CTNAG	3 cut(s)	56, 72, 272
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	4 cut(s)	63, 162, 265, 278
BstMAI	GTCTC	2 cut(s)	437, 597
BstMBI	GATC	4 cut(s)	60, 159, 262, 275
BstNI	CCWGG	2 cut(s)	286, 478
BstSCI	CCNGG	4 cut(s)	144, 162, 284, 476
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	159, 275
BstYI	RGATCY	2 cut(s)	159, 275
BsuRI	GGCC	3 cut(s)	34, 296, 381
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	199, 248
CaiI	CAGNNNCTG	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	3 cut(s)	94, 217, 499
CviAII	CATG	2 cut(s)	343, 637
CviQI	GTAC	3 cut(s)	94, 217, 499
DdeI	CTNAG	3 cut(s)	56, 72, 272
DpnI	GATC	4 cut(s)	62, 161, 264, 277
DpnII	GATC	4 cut(s)	60, 159, 262, 275
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	3 cut(s)	554, 572, 600
EarI	CTCTTC	3 cut(s)	554, 572, 600
Eco130I	CCWWGG	1 cut(s)	448
Eco147I	AGGCCT	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	437
Eco57I	CTGAAG	2 cut(s)	155, 502
EcoRII	CCWGG	2 cut(s)	284, 476
EcoT14I	CCWWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	346, 640
FaiI	YATR	8 cut(s)	340, 344, 483, 524, 548, 569, 618, 638
FalI	AAGNNNNNCTT	6 cut(s)	369, 401, 399, 431, 416, 448
FatI	CATG	2 cut(s)	342, 636
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	34, 296, 381
HapII	CCGG	2 cut(s)	146, 164
Hin1II	CATG	2 cut(s)	346, 640
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	37, 197
HpaII	CCGG	2 cut(s)	146, 164
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	4 cut(s)	151, 307, 460, 499
Hpy188I	TCNGA	2 cut(s)	262, 275
Hpy188III	TCNNGA	2 cut(s)	112, 599
Hpy8I	GTNNAC	4 cut(s)	151, 307, 460, 499
HpyAV	CCTTC	2 cut(s)	328, 401
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	342, 393, 571, 631
HpyF3I	CTNAG	3 cut(s)	56, 72, 272
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	346, 640
Kzo9I	GATC	4 cut(s)	60, 159, 262, 275
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	4 cut(s)	62, 161, 264, 277
MboI	GATC	4 cut(s)	60, 159, 262, 275
MboII	GAAGA	7 cut(s)	116, 169, 368, 571, 586, 587, 589
MflI	RGATCY	2 cut(s)	159, 275
MhlI	GDGCHC	2 cut(s)	125, 537
MluCI	AATT	2 cut(s)	299, 632
MlyI	GAGTC	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	344
MspI	CCGG	2 cut(s)	146, 164
MspR9I	CCNGG	4 cut(s)	146, 164, 286, 478
MvaI	CCWGG	2 cut(s)	286, 478
NciI	CCSGG	2 cut(s)	146, 164
NdeII	GATC	4 cut(s)	60, 159, 262, 275
NlaIII	CATG	2 cut(s)	346, 640
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	284, 476
PspGI	CCWGG	2 cut(s)	284, 476
PspPI	GGNCC	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	2 cut(s)	159, 275
RsaI	GTAC	3 cut(s)	95, 218, 500
RsaNI	GTAC	3 cut(s)	94, 217, 499
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	4 cut(s)	60, 159, 262, 275
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	4 cut(s)	146, 164, 286, 478
SduI	GDGCHC	2 cut(s)	125, 537
SfaNI	GCATC	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	299, 632
SseBI	AGGCCT	1 cut(s)	381
SspMI	CTAG	1 cut(s)	68
StuI	AGGCCT	1 cut(s)	381
StyD4I	CCNGG	4 cut(s)	144, 162, 284, 476
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	252
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	299, 632
TatI	WGTACW	2 cut(s)	93, 216
TfiI	GAWTC	1 cut(s)	197
TscAI	CASTG	2 cut(s)	199, 255
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	535, 625
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	2 cut(s)	199, 255
Van91I	CCANNNNNTGG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	299
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.