Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

10270151 .. 10270894

Gene Structure 744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGGATGAAGTTGTGTTGCTAGACTACTGGCTCAGCCCTTATGGGATGAGGTTGAGGATCGCTCTGGCTTTAAAAGGGATAGATTATGAGCTGAAGGAAGAAGACTTGACCAACAAGAGTCCACTGTTGCTGCAGTCAAACCCGGTTCACAAGAAGGTCCCTGTACTCATTCACAATAGCAAACCAATATGTGAGTCCGCCGTTGCTCTTCAGTACATTGACGAGGTCTGGAACGATAAGGCACCGCTATTTCCCTCCGATCCTTACCTCAGATCACAAGCTAAGTTCTGGGCTGATTTCGTTGACAAGAAGATCTCTGGCTTTGCGAGGAAGCTATGGACAACCAAAGGAGAAGAACTGGAAGCAGTGAAGAAGGACTTGTTTGATTCTCTTAAGTTGTTAGAACAAGAACTTGGCGATAAGCTTTTCTTTGGGGATGAGACTCTCGGGCTTGTGGATTTGGCACTTCTTCCTTTCGCTATTTGGTTTTCTGTCCACGAGAAATTGGGTAGCTTCAGTTTAGAGGCAGAGTGCCCGAAGATCACTCCTTGGCTGAAGAGGTGTTTCCAAATGGAAAGTGTTTCCAAGTCTGTTCCAAGCCCCGATAAGCTTTATGACTATGTTGTGCAGATGAGGAAAAGCAGACAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

219

Amino Acids

25.09

Weight (kDa)

5.56

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 76	3.9e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	8 - 76	1.4e-13	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 76	2e-13	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	116 - 191	4.7e-07	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	120 - 188	2.7e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AciI	CCGC	3 cut(s)	5, 201, 248
AclWI	GGATC	2 cut(s)	68, 257
AcuI	CTGAAG	4 cut(s)	116, 197, 502, 578
AfaI	GTAC	2 cut(s)	168, 218
AflII	CTTAAG	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	6 cut(s)	94, 284, 337, 427, 516, 613
AluI	AGCT	6 cut(s)	94, 284, 337, 427, 516, 613
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	68, 257
Ama87I	CYCGRG	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	244
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	120
BceAI	ACGGC	1 cut(s)	188
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	437
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	395
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	1 cut(s)	134
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	162, 246
BmrFI	CCNGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
Bpu1102I	GCTNAGC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	551
Bse1I	ACTGG	2 cut(s)	35, 366
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	3 cut(s)	13, 54, 445
BseMII	CTCAG	2 cut(s)	49, 286
BseNI	ACTGG	2 cut(s)	35, 366
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	650
BshNI	GGYRCC	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	5 cut(s)	60, 262, 275, 315, 543
Bsp1720I	GCTNAGC	1 cut(s)	35
BspACI	CCGC	3 cut(s)	5, 201, 248
BspCNI	CTCAG	2 cut(s)	48, 285
BspLI	GGNNCC	2 cut(s)	162, 246
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	68, 257
BspQI	GCTCTTC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	244
BspTI	CTTAAG	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	35, 366
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	5 cut(s)	60, 262, 275, 315, 543
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	1 cut(s)	551
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	216, 554
BstAFI	CTTAAG	1 cut(s)	395
BstDEI	CTNAG	3 cut(s)	35, 272, 285
BstF5I	GGATG	3 cut(s)	13, 54, 445
BstKTI	GATC	5 cut(s)	63, 265, 278, 318, 546
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	5 cut(s)	60, 262, 275, 315, 543
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	13, 54, 445
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	125, 375
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	167, 217
CviQI	GTAC	2 cut(s)	167, 217
DdeI	CTNAG	3 cut(s)	35, 272, 285
DpnI	GATC	5 cut(s)	62, 264, 277, 317, 545
DpnII	GATC	5 cut(s)	60, 262, 275, 315, 543
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	216, 554
EarI	CTCTTC	2 cut(s)	216, 554
EciI	GGCGGA	2 cut(s)	20, 190
Eco130I	CCWWGG	1 cut(s)	551
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	4 cut(s)	116, 197, 502, 578
Eco88I	CYCGRG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	551
ErhI	CCWWGG	1 cut(s)	551
FaiI	YATR	6 cut(s)	45, 90, 193, 340, 618, 624
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 416, 448
FaqI	GGGAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	134
FokI	GGATG	3 cut(s)	20, 61, 452
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	1 cut(s)	134
HapII	CCGG	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	2 cut(s)	425, 611
HinfI	GANTC	4 cut(s)	121, 197, 389, 445
HpaII	CCGG	1 cut(s)	146
Hpy166II	GTNNAC	4 cut(s)	125, 151, 307, 499
Hpy188I	TCNGA	2 cut(s)	262, 275
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	4 cut(s)	125, 151, 307, 499
HpyAV	CCTTC	3 cut(s)	91, 151, 370
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	136, 631
HpyF3I	CTNAG	3 cut(s)	35, 272, 285
Kzo9I	GATC	5 cut(s)	60, 262, 275, 315, 543
LguI	GCTCTTC	1 cut(s)	216
LpnPI	CCDG	8 cut(s)	16, 53, 159, 177, 217, 277, 306, 347
Lsp1109I	GCAGC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	23
MalI	GATC	5 cut(s)	62, 264, 277, 317, 545
MboI	GATC	5 cut(s)	60, 262, 275, 315, 543
MboII	GAAGA	9 cut(s)	113, 116, 203, 325, 368, 385, 464, 553, 571
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	1 cut(s)	506
MlyI	GAGTC	3 cut(s)	130, 206, 439
MnlI	CCTC	9 cut(s)	45, 51, 220, 268, 281, 324, 520, 555, 630
MseI	TTAA	2 cut(s)	74, 396
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	146
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	5 cut(s)	60, 262, 275, 315, 543
NlaIV	GGNNCC	2 cut(s)	162, 246
PciSI	GCTCTTC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	389
PflFI	GACNNNGTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	135
PleI	GAGTC	3 cut(s)	129, 205, 439
PpsI	GAGTC	3 cut(s)	129, 205, 439
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	162, 246
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	315
PsyI	GACNNNGTC	1 cut(s)	227
RsaI	GTAC	2 cut(s)	168, 218
RsaNI	GTAC	2 cut(s)	167, 217
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	74, 396
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	5 cut(s)	60, 262, 275, 315, 543
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	3 cut(s)	130, 206, 439
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	3 cut(s)	5, 201, 248
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	1 cut(s)	129
TasI	AATT	1 cut(s)	506
TatI	WGTACW	2 cut(s)	166, 216
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	2 cut(s)	74, 396
Tru9I	TTAA	2 cut(s)	74, 396
TscAI	CASTG	2 cut(s)	132, 375
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	132, 375
Tth111I	GACNNNGTC	1 cut(s)	227
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	1 cut(s)	160
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.