Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Forward (+)

34154934 .. 34156291

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1210100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGGATGAGGTGGTTTTGTTGGATTTCTGGCCCAGCCCGTTTGGGATGAGGCTGAGGATCGCTCTGGCTGAGAAGGGCATCGAGTATGAGTACAAAGAAGATGACTTGTGGAACAAGAGCCCATTGTTGCTGCAGATGAACCCGGTTCACAAGAAGATCCCGGTTCTCATTCACAATGGAAAACCGGTCTGTGAGTCCCTCATTGCACTTCAGTACATTGATGAGGTTTGGAATGATAAGGCTCCACTCTTGCCCTCTGACTCTTACCTCAGAGCCCAGGCCAGGTTCTGGGCTGACTTCGTCGACAAGAAGATACATGAGAATGGGAGGAAGTTGTGGACAACCAAAGGAGAAGAATATGATGCAGCAAAGAAAGACTTTCTCGACTGCATCGGCGTGTTAGAAGGAGAGCTCGGAAACAAGCCCTTCTTTGGCGGGGAGACCCTCGGATTCGTGGACGTGGCGCTTGTTCCATTCTATAGCTGGTTTCTTGTGTATGAAAAATTTGGCAACTTCAGTGTTGAGGCAGAGCACCCAAAGTTCATTGCCTGGGTTAAGAGGTGCATGGAGAAGGAGAGCGTGTCCAAGTCGCTTCCCGAGCAGGAAAAGGTCTACGATTTCTTCATGCTTATAAGGAAAAAGCGTGGGATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

220

Amino Acids

25.49

Weight (kDa)

5.55

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 76	2.7e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	12 - 76	4.9e-12	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 76	1.7e-14	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	117 - 192	1.4e-09	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	119 - 188	1.6e-09	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AccB7I	CCANNNNNTGG	1 cut(s)	291
AccI	GTMKAC	2 cut(s)	306, 615
AciI	CCGC	2 cut(s)	5, 438
AclWI	GGATC	2 cut(s)	68, 154
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	2 cut(s)	197, 502
AfaI	GTAC	2 cut(s)	95, 218
AfiI	CCNNNNNNNGG	3 cut(s)	285, 291, 434
AgeI	ACCGGT	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	3 cut(s)	279, 284, 551
AluBI	AGCT	2 cut(s)	415, 486
AluI	AGCT	2 cut(s)	415, 486
Alw21I	GWGCWC	2 cut(s)	417, 537
Alw26I	GTCTC	1 cut(s)	437
AlwI	GGATC	2 cut(s)	68, 154
AlwNI	CAGNNNCTG	1 cut(s)	291
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	2 cut(s)	32, 282
ApeKI	GCWGC	2 cut(s)	133, 368
ApoI	RAATTY	1 cut(s)	506
AsiGI	ACCGGT	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	2 cut(s)	146, 164
AvaI	CYCGRG	1 cut(s)	599
BanII	GRGCYC	3 cut(s)	125, 280, 417
Bbv12I	GWGCWC	2 cut(s)	417, 537
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	120, 380
BciT130I	CCWGG	3 cut(s)	281, 286, 553
BcnI	CCSGG	2 cut(s)	146, 164
BcoDI	GTCTC	1 cut(s)	437
BfmI	CTRYAG	2 cut(s)	134, 481
BfoI	RGCGCY	1 cut(s)	470
BisI	GCNGC	2 cut(s)	134, 369
BlsI	GCNGC	2 cut(s)	135, 370
Bme1390I	CCNGG	5 cut(s)	146, 164, 281, 286, 553
BmeT110I	CYCGRG	1 cut(s)	599
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	5 cut(s)	146, 164, 281, 286, 553
BmsI	GCATC	3 cut(s)	90, 355, 402
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
Bpu10I	CCTNAGC	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	146, 164
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	279, 448, 552
BsaWI	WCCGGW	1 cut(s)	187
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	285, 291, 434
Bse118I	RCCGGY	1 cut(s)	187
Bse3DI	GCAATG	2 cut(s)	204, 546
BseBI	CCWGG	3 cut(s)	281, 286, 553
BseDI	CCNNGG	3 cut(s)	279, 448, 552
BseGI	GGATG	2 cut(s)	13, 54
BseLI	CCNNNNNNNGG	3 cut(s)	285, 291, 434
BseMI	GCAATG	2 cut(s)	204, 546
BseMII	CTCAG	3 cut(s)	47, 63, 286
BseXI	GCAGC	2 cut(s)	120, 380
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	2 cut(s)	34, 284
BshTI	ACCGGT	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	417, 537
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	3 cut(s)	146, 164, 188
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	3 cut(s)	285, 291, 434
BsmAI	GTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	34, 284
Bso31I	GGTCTC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	599
Bsp1286I	GDGCHC	4 cut(s)	125, 280, 417, 537
Bsp143I	GATC	2 cut(s)	60, 159
BspACI	CCGC	2 cut(s)	5, 438
BspANI	GGCC	2 cut(s)	34, 284
BspCNI	CTCAG	3 cut(s)	48, 64, 285
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	68, 154
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	2 cut(s)	204, 546
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	3 cut(s)	279, 448, 552
BssMI	GATC	2 cut(s)	60, 159
Bst2UI	CCWGG	3 cut(s)	281, 286, 553
BstDEI	CTNAG	3 cut(s)	56, 72, 272
BstF5I	GGATG	2 cut(s)	13, 54
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	2 cut(s)	63, 162
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	2 cut(s)	60, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	601
BstNI	CCWGG	3 cut(s)	281, 286, 553
BstSCI	CCNGG	5 cut(s)	144, 162, 279, 284, 551
BstSFI	CTRYAG	2 cut(s)	134, 481
BstV1I	GCAGC	2 cut(s)	120, 380
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	34, 284
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	13, 54
BtsIMutI	CAGTG	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	291
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	94, 217
CspAI	ACCGGT	1 cut(s)	187
CviAII	CATG	3 cut(s)	320, 568, 628
CviQI	GTAC	2 cut(s)	94, 217
DdeI	CTNAG	3 cut(s)	56, 72, 272
DpnI	GATC	2 cut(s)	62, 161
DpnII	GATC	2 cut(s)	60, 159
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	415
Eco24I	GRGCYC	3 cut(s)	125, 280, 417
Eco31I	GGTCTC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	197, 502
Eco88I	CYCGRG	1 cut(s)	599
EcoICRI	GAGCTC	1 cut(s)	415
EcoRII	CCWGG	3 cut(s)	279, 284, 551
EcoT38I	GRGCYC	3 cut(s)	125, 280, 417
FaeI	CATG	3 cut(s)	323, 571, 631
FaiI	YATR	8 cut(s)	90, 321, 363, 483, 501, 569, 629, 635
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 416, 448
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	3 cut(s)	319, 567, 627
FauI	CCCGC	1 cut(s)	431
FblI	GTMKAC	2 cut(s)	306, 615
Fnu4HI	GCNGC	2 cut(s)	134, 369
FokI	GGATG	2 cut(s)	20, 61
FriOI	GRGCYC	3 cut(s)	125, 280, 417
Fsp4HI	GCNGC	2 cut(s)	134, 369
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	2 cut(s)	134, 369
GsaI	CCCAGC	1 cut(s)	39
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	34, 284
HapII	CCGG	3 cut(s)	146, 164, 188
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	3 cut(s)	323, 571, 631
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	197, 263, 453
HpaII	CCGG	3 cut(s)	146, 164, 188
Hpy166II	GTNNAC	5 cut(s)	151, 307, 342, 460, 616
Hpy188I	TCNGA	4 cut(s)	262, 275, 419, 452
Hpy188III	TCNNGA	2 cut(s)	386, 599
Hpy8I	GTNNAC	5 cut(s)	151, 307, 342, 460, 616
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	4 cut(s)	70, 401, 439, 568
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	5 cut(s)	136, 209, 368, 393, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	601
HpyF3I	CTNAG	3 cut(s)	56, 72, 272
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	323, 571, 631
HspAI	GCGC	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	60, 159
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	2 cut(s)	120, 380
LweI	GCATC	3 cut(s)	90, 355, 402
MaeII	ACGT	1 cut(s)	462
MalI	GATC	2 cut(s)	62, 161
MboI	GATC	2 cut(s)	60, 159
MboII	GAAGA	5 cut(s)	113, 169, 325, 368, 616
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	4 cut(s)	125, 280, 417, 537
MluCI	AATT	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	206, 257
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	324, 398
MspI	CCGG	3 cut(s)	146, 164, 188
MspR9I	CCNGG	5 cut(s)	146, 164, 281, 286, 553
MvaI	CCWGG	3 cut(s)	281, 286, 553
MwoI	GCNNNNNNNGC	1 cut(s)	601
NciI	CCSGG	2 cut(s)	146, 164
NdeII	GATC	2 cut(s)	60, 159
NlaIII	CATG	3 cut(s)	323, 571, 631
NlaIV	GGNNCC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	453
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	291
PinAI	ACCGGT	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	135, 370
PleI	GAGTC	2 cut(s)	205, 257
PpsI	GAGTC	2 cut(s)	205, 257
PsiI	TTATAA	1 cut(s)	635
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	3 cut(s)	279, 284, 551
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	3 cut(s)	279, 284, 551
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	159
PsyI	GACNNNGTC	1 cut(s)	302
RsaI	GTAC	2 cut(s)	95, 218
RsaNI	GTAC	2 cut(s)	94, 217
RseI	CAYNNNNRTG	2 cut(s)	324, 398
SacI	GAGCTC	1 cut(s)	417
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	2 cut(s)	134, 369
Sau3AI	GATC	2 cut(s)	60, 159
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	2 cut(s)	206, 257
ScrFI	CCNGG	5 cut(s)	146, 164, 281, 286, 553
SduI	GDGCHC	4 cut(s)	125, 280, 417, 537
SetI	ASST	9 cut(s)	15, 231, 273, 290, 417, 465, 488, 566, 615
SfaNI	GCATC	3 cut(s)	90, 355, 402
SfcI	CTRYAG	2 cut(s)	134, 481
SmiMI	CAYNNNNRTG	2 cut(s)	324, 398
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	2 cut(s)	5, 438
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	5 cut(s)	144, 162, 279, 284, 551
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	84, 306, 387
TasI	AATT	1 cut(s)	506
TatI	WGTACW	2 cut(s)	93, 216
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	2 cut(s)	133, 368
TspDTI	ATGAA	4 cut(s)	155, 516, 535, 616
TspRI	CASTG	1 cut(s)	526
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	291
XapI	RAATTY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XmiI	GTMKAC	2 cut(s)	306, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.