Rh5AG192300

glutathione s-transferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
22226036 .. 22227467
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG192300.1

Sequence Viewer

Length: 663 bp
ATGGCGGAGGTGGTTGTTGTTCTGGGCTTCTGGTCGAGCATGTTTGCCATGAGACCCAGAGTTGCTCTGACCGAGAAAGGGGTGGAGTATGAGTACAGAGAGGAGGACTTGCCCAACAAAACCTCACTGCTTCTGGAGATGAACCCGATCCACAAGAAAGTCCCCGTTCTTATCCACAACGGCAAACCCGTCTGTGAGTCGGCCAACATTGTCCAGTATATTGACGAGGCTTGGAAGGACAAAGGTCCTACTTTGCTTCCCTCTGATCCTTACCAGAGAGGTCAGGCCAGGTTCTGGGTTGATTACATTGATAAAAAGTTATATGAAGCTGGGAAGAATATATGGTACACAAAGGGAGAAGAACAAGAAGCAGCCAAGAAGGTTTTTTTGGAAATCCTTAAGCTGCTGGAGGGAGAACTTGGGGACAAGACATACTTTGGGGGACAGAGCTTTGGGTTCTTAGACATCAATCTTGTCACATTTTACTGTTGGTTTTTGACCTATGAGACCATCGGAAACTTCAGCATAGAGGCAGAGTGCCCCAAACTGATTGCATGGTTCAACAGGTGTATGCAGAAGGAGAGCGTCTCCAAAACTCTTCCTGACCCAAAAAAGGTATATGAGTTTTGCCTTTTCTTGCAAAAGTATTATGGTGTGGCATAG
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

220

Amino Acids

25.54

Weight (kDa)

5.6

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 5 - 76 7.6e-20 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 10 - 77 1.9e-14 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 13 - 76 3.7e-13 Glutathione S-transferase, N-terminal domain
GST_C PF00043 117 - 193 1.3e-09 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 122 - 189 2.7e-07 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 142, 260
AcoI YGGCCR 1 cut(s) 201
AcuI CTGAAG 1 cut(s) 505
AfaI GTAC 2 cut(s) 95, 347
AfiI CCNNNNNNNGG 3 cut(s) 78, 294, 613
AflII CTTAAG 1 cut(s) 398
AgsI TTSAA 1 cut(s) 562
AjnI CCWGG 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 3 cut(s) 329, 403, 450
AluI AGCT 3 cut(s) 329, 403, 450
Alw26I GTCTC 3 cut(s) 46, 500, 592
AlwI GGATC 2 cut(s) 142, 260
AlwNI CAGNNNCTG 1 cut(s) 294
AoxI GGCC 2 cut(s) 201, 285
ApeKI GCWGC 2 cut(s) 371, 403
AspS9I GGNCC 1 cut(s) 245
AvaII GGWCC 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 542
BbvI GCAGC 2 cut(s) 383, 390
BccI CCATC 1 cut(s) 518
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 1 cut(s) 289
BcoDI GTCTC 3 cut(s) 46, 500, 592
BfrI CTTAAG 1 cut(s) 398
BisI GCNGC 2 cut(s) 372, 404
BlsI GCNGC 2 cut(s) 373, 405
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 572, 604
BpmI CTGGAG 2 cut(s) 155, 428
BsaI GGTCTC 2 cut(s) 46, 500
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 294, 613
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 289
BseLI CCNNNNNNNGG 3 cut(s) 78, 294, 613
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 116
BseSI GKGCMC 1 cut(s) 542
BseXI GCAGC 2 cut(s) 383, 390
BseYI CCCAGC 1 cut(s) 329
BshFI GGCC 2 cut(s) 203, 287
BslFI GGGAC 3 cut(s) 146, 437, 456
BslI CCNNNNNNNGG 3 cut(s) 78, 294, 613
BsmAI GTCTC 3 cut(s) 46, 500, 592
BsmBI CGTCTC 1 cut(s) 592
BsmFI GGGAC 3 cut(s) 146, 437, 456
BsnI GGCC 2 cut(s) 203, 287
Bso31I GGTCTC 2 cut(s) 46, 500
Bsp1286I GDGCHC 1 cut(s) 542
Bsp143I GATC 2 cut(s) 147, 265
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 203, 287
BspPI GGATC 2 cut(s) 142, 260
BspTI CTTAAG 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 46, 500
BsrI ACTGG 1 cut(s) 214
BssMI GATC 2 cut(s) 147, 265
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 1 cut(s) 603
BstAFI CTTAAG 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 460
BstKTI GATC 2 cut(s) 150, 268
BstMAI GTCTC 3 cut(s) 46, 500, 592
BstMBI GATC 2 cut(s) 147, 265
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 43
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 542
BstV1I GCAGC 2 cut(s) 383, 390
BsuRI GGCC 2 cut(s) 203, 287
BtsI GCAGTG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 245
CseI GACGC 1 cut(s) 574
Csp6I GTAC 2 cut(s) 94, 346
CviAII CATG 3 cut(s) 40, 49, 555
CviJI RGCY 8 cut(s) 27, 203, 230, 287, 329, 374, 403, 450
CviKI_1 RGCY 8 cut(s) 27, 203, 230, 287, 329, 374, 403, 450
CviQI GTAC 2 cut(s) 94, 346
DdeI CTNAG 1 cut(s) 460
DpnI GATC 2 cut(s) 149, 267
DpnII GATC 2 cut(s) 147, 265
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 46, 500
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 592
FaeI CATG 3 cut(s) 43, 52, 558
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 3 cut(s) 146, 437, 456
FatI CATG 3 cut(s) 39, 48, 554
Fnu4HI GCNGC 2 cut(s) 372, 404
Fsp4HI GCNGC 2 cut(s) 372, 404
GluI GCNGC 2 cut(s) 372, 404
GsaI CCCAGC 1 cut(s) 333
GsuI CTGGAG 2 cut(s) 155, 428
HaeIII GGCC 2 cut(s) 203, 287
HgaI GACGC 1 cut(s) 574
Hin1II CATG 3 cut(s) 43, 52, 558
HinfI GANTC 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 348
Hpy188I TCNGA 3 cut(s) 69, 265, 515
Hpy188III TCNNGA 2 cut(s) 134, 602
Hpy8I GTNNAC 1 cut(s) 348
HpyAV CCTTC 3 cut(s) 229, 373, 571
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 554, 574, 640
HpyF3I CTNAG 1 cut(s) 460
Hsp92II CATG 3 cut(s) 43, 52, 558
Kzo9I GATC 2 cut(s) 147, 265
Lsp1109I GCAGC 2 cut(s) 383, 390
MaeIII GTNAC 1 cut(s) 475
MalI GATC 2 cut(s) 149, 267
MboI GATC 2 cut(s) 147, 265
MboII GAAGA 3 cut(s) 346, 371, 590
MhlI GDGCHC 1 cut(s) 542
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 8 cut(s) 94, 97, 133, 220, 271, 272, 403, 523
MseI TTAA 1 cut(s) 399
MspCI CTTAAG 1 cut(s) 398
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
NdeII GATC 2 cut(s) 147, 265
NlaIII CATG 3 cut(s) 43, 52, 558
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 2 cut(s) 373, 405
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 245
PshAI GACNNNNGTC 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 329
PspGI CCWGG 1 cut(s) 287
PspPI GGNCC 1 cut(s) 245
PspPPI RGGWCCY 1 cut(s) 245
PstNI CAGNNNCTG 1 cut(s) 294
RsaI GTAC 2 cut(s) 95, 347
RsaNI GTAC 2 cut(s) 94, 346
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 2 cut(s) 372, 404
Sau3AI GATC 2 cut(s) 147, 265
Sau96I GGNCC 1 cut(s) 245
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 542
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 488
TaqI TCGA 1 cut(s) 35
TaqII GACCGA 1 cut(s) 86
TatI WGTACW 1 cut(s) 93
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 371, 403
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 2 cut(s) 155, 339
TspRI CASTG 1 cut(s) 132
Van91I CCANNNNNTGG 1 cut(s) 294
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 245
XceI RCATGY 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.