Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

3807094 .. 3807959

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1033800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGTGATGGGGATGAAGTGGTTCTTGTGGGATTCTGGACAAGTCCTTATGTCATGAGAGTGAAAATTGCTTTGGCGGAGAAGGGAGTCCATTACCTCTATTTGGAAGAAGAACATCTTCTCCAAAATAACAAGAGCCCTTTGCTTCTCGAAGTCAACCCAGTGCATCAGAAAGTTCCTGTCCTCATTCATAACAATAAGCCCGTATGTGAATCCCTCATCATTCTTCAATACATTGCTGACGTTTGGAGTGATCACAAACCTCCTCTACTTTCAGAGGATCCTTATCGGCGATCTAAAGAAAGATTTTGGGTCGACTTTTTCAACAAGGAGATAGCAGACTGTGGGAGAAGGATGTGGGCTTCCAAGGGAGCAGACCAGGAAGCAGCAAAGAACGAGTTTGTAGAAGTCTTAAAGCTGTTAGAAGGCGAGCTTGGGGAGAAGCCTTACTTCGAAGGTGATCGTTTCGGCCTCCTGGATGTCACTCTGGTACCATTTGCCTGCAGGTTTTACACATATGAGATGTTTTGCAATTTTAGCGTGGAGAAAGAGTGCCCAAAGATAATGCAATGGGTGAAAAGGTGCAGCCTGAGGGAGAGTGTTTCCAAGACCCTTCCTGACAAATATAAAGTCTATGACTTCGTCTTGGAAGTCAAGAAAATGCTTGGAATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

226

Amino Acids

26.26

Weight (kDa)

5.82

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	8 - 80	9.3e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 80	3.1e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 81	3.4e-12	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	123 - 198	5.4e-09	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	128 - 194	4.6e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	495
Acc65I	GGTACC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	275, 288
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	230, 325
AjnI	CCWGG	2 cut(s)	378, 474
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 417, 449
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	2 cut(s)	418, 433
AluI	AGCT	2 cut(s)	418, 433
AlwI	GGATC	2 cut(s)	275, 288
AoxI	GGCC	1 cut(s)	469
ApeKI	GCWGC	2 cut(s)	386, 585
ArsI	GACNNNNNNTTYG	2 cut(s)	615, 647
Asp700I	GAANNNNTTC	2 cut(s)	21, 117
Asp718I	GGTACC	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	17, 470, 586
AsuII	TTCGAA	1 cut(s)	453
AxyI	CCTNAGG	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BamHI	GGATCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	398, 597
BccI	CCATC	1 cut(s)	2
BciT130I	CCWGG	2 cut(s)	380, 476
BclI	TGATCA	1 cut(s)	253
BfmI	CTRYAG	1 cut(s)	502
BfuAI	ACCTGC	1 cut(s)	495
BisI	GCNGC	2 cut(s)	387, 586
BlsI	GCNGC	2 cut(s)	388, 587
Bme1390I	CCNGG	2 cut(s)	380, 476
BmiI	GGNNCC	2 cut(s)	282, 492
BmrFI	CCNGG	2 cut(s)	380, 476
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	155
Bpu14I	TTCGAA	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	4 cut(s)	105, 135, 536, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	590
Bse3DI	GCAATG	2 cut(s)	234, 575
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	380, 476
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	3 cut(s)	19, 360, 484
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	2 cut(s)	234, 575
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	398, 597
BsgI	GTGCAG	1 cut(s)	604
BshFI	GGCC	1 cut(s)	471
BshNI	GGYRCC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	103
BsnI	GGCC	1 cut(s)	471
Bsp119I	TTCGAA	1 cut(s)	453
Bsp1286I	GDGCHC	2 cut(s)	140, 557
Bsp143I	GATC	4 cut(s)	253, 280, 293, 460
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	2 cut(s)	282, 492
BspMAI	CTGCAG	1 cut(s)	506
BspMI	ACCTGC	1 cut(s)	495
BspPI	GGATC	2 cut(s)	275, 288
BspT104I	TTCGAA	1 cut(s)	453
BspT107I	GGYRCC	1 cut(s)	490
BsrDI	GCAATG	2 cut(s)	234, 575
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	4 cut(s)	253, 280, 293, 460
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	380, 476
Bst4CI	ACNGT	1 cut(s)	344
BstBI	TTCGAA	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	431, 502
BstDEI	CTNAG	1 cut(s)	590
BstF5I	GGATG	3 cut(s)	19, 360, 484
BstKTI	GATC	4 cut(s)	256, 283, 296, 463
BstMBI	GATC	4 cut(s)	253, 280, 293, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	537
BstNI	CCWGG	2 cut(s)	380, 476
BstSCI	CCNGG	2 cut(s)	378, 474
BstSFI	CTRYAG	1 cut(s)	502
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	398, 597
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	471
BtsCI	GGATG	3 cut(s)	19, 360, 484
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	495
Cac8I	GCNNGC	2 cut(s)	431, 502
CciI	TCATGA	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	8 cut(s)	138, 202, 362, 418, 433, 445, 471, 588
CviKI_1	RGCY	8 cut(s)	138, 202, 362, 418, 433, 445, 471, 588
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	1 cut(s)	590
DpnI	GATC	4 cut(s)	255, 282, 295, 462
DpnII	GATC	4 cut(s)	253, 280, 293, 460
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	378, 474
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	58
FaiI	YATR	8 cut(s)	51, 56, 192, 208, 517, 519, 627, 636
FalI	AAGNNNNNCTT	8 cut(s)	9, 41, 102, 134, 417, 449, 434, 466
FatI	CATG	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	387, 586
FokI	GGATG	3 cut(s)	26, 367, 491
FriOI	GRGCYC	1 cut(s)	140
Fsp4HI	GCNGC	2 cut(s)	387, 586
GluI	GCNGC	2 cut(s)	387, 586
HaeIII	GGCC	1 cut(s)	471
Hin1II	CATG	1 cut(s)	58
HincII	GTYRAC	2 cut(s)	157, 316
HindII	GTYRAC	2 cut(s)	157, 316
HinfI	GANTC	3 cut(s)	33, 87, 212
HphI	GGTGA	3 cut(s)	17, 470, 586
Hpy166II	GTNNAC	2 cut(s)	157, 316
Hpy188I	TCNGA	2 cut(s)	171, 277
Hpy188III	TCNNGA	5 cut(s)	37, 55, 149, 617, 655
Hpy8I	GTNNAC	2 cut(s)	157, 316
HpyAV	CCTTC	5 cut(s)	76, 345, 419, 449, 623
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	5 cut(s)	166, 504, 531, 568, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	537
HpyF3I	CTNAG	1 cut(s)	590
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	494
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	253, 280, 293, 460
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	2 cut(s)	398, 597
LweI	GCATC	1 cut(s)	175
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	4 cut(s)	255, 282, 295, 462
MboI	GATC	4 cut(s)	253, 280, 293, 460
MboII	GAAGA	4 cut(s)	110, 119, 122, 218
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	2 cut(s)	140, 557
MluCI	AATT	3 cut(s)	66, 532, 673
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	8 cut(s)	107, 194, 227, 271, 273, 276, 482, 585
MroXI	GAANNNNTTC	2 cut(s)	21, 117
MseI	TTAA	1 cut(s)	413
MslI	CAYNNNNRTG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	380, 476
MvaI	CCWGG	2 cut(s)	380, 476
MwoI	GCNNNNNNNGC	1 cut(s)	537
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	4 cut(s)	253, 280, 293, 460
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	2 cut(s)	282, 492
NmuCI	GTSAC	1 cut(s)	481
NspV	TTCGAA	1 cut(s)	453
PagI	TCATGA	1 cut(s)	54
PdmI	GAANNNNTTC	2 cut(s)	21, 117
PfeI	GAWTC	2 cut(s)	33, 212
PflFI	GACNNNGTC	1 cut(s)	641
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	2 cut(s)	388, 587
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	378, 474
PspGI	CCWGG	2 cut(s)	378, 474
PspN4I	GGNNCC	2 cut(s)	282, 492
PstI	CTGCAG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	280
PsyI	GACNNNGTC	1 cut(s)	641
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	59
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	413
SatI	GCNGC	2 cut(s)	387, 586
Sau3AI	GATC	4 cut(s)	253, 280, 293, 460
SbfI	CCTGCAGG	1 cut(s)	506
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	380, 476
SdaI	CCTGCAGG	1 cut(s)	506
SduI	GDGCHC	2 cut(s)	140, 557
SetI	ASST	8 cut(s)	99, 246, 265, 420, 435, 460, 509, 584
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	502
SfuI	TTCGAA	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse8387I	CCTGCAGG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	66, 532, 673
SsiI	CCGC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	378, 474
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	150, 315, 453
TasI	AATT	3 cut(s)	66, 532, 673
TfiI	GAWTC	2 cut(s)	33, 212
Tru1I	TTAA	1 cut(s)	413
Tru9I	TTAA	1 cut(s)	413
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	2 cut(s)	386, 585
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	30, 179
TspRI	CASTG	1 cut(s)	168
Tth111I	GACNNNGTC	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	2 cut(s)	21, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.