Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003500.1

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

115844 .. 116194

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003500.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgcagatctctggttttgcgaggaagttatggtcaggggccaaaggagaagaaatggaagcagtaaagaaggacttgtttgattgtctcaggttgtttgaaggagagcttggcgataagcctttttttgggggtgagactcttggacttgtggatttggcacttcttcctttcgcttcctggttttctgtccacgacaaatttggtaccttcagtttagaagcagagtgccctaagatccctccttgggttaagaggtgtttccagatggaaagtgtctccgagtctgttccaagcccggatcagctctatgactacgttgtgaagatgaggaacagtagacaagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

116

Amino Acids

13.2

Weight (kDa)

5.06

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	340
AclWI	GGATC	2 cut(s)	232, 309
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	128, 247
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	2 cut(s)	109, 307
AluI	AGCT	2 cut(s)	109, 307
Alw26I	GTCTC	3 cut(s)	92, 131, 283
AlwI	GGATC	2 cut(s)	232, 309
AoxI	GGCC	1 cut(s)	39
ApoI	RAATTY	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	39
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	146
BaeGI	GKGCMC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	206
BccI	CCATC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	3 cut(s)	92, 131, 283
BglII	AGATCT	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	181, 299
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	40, 208
BmrFI	CCNGG	2 cut(s)	181, 299
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 247
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	128, 247
BseMII	CTCAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	128, 247
BsmAI	GTCTC	3 cut(s)	92, 131, 283
BsnI	GGCC	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	6, 237, 301
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	40, 208
BspPI	GGATC	2 cut(s)	232, 309
BspT107I	GGYRCC	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	3 cut(s)	6, 237, 301
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	89, 234
BstKTI	GATC	3 cut(s)	9, 240, 304
BstMAI	GTCTC	3 cut(s)	92, 131, 283
BstMBI	GATC	3 cut(s)	6, 237, 301
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	179, 297
BstSLI	GKGCMC	1 cut(s)	233
BstX2I	RGATCY	2 cut(s)	6, 237
BstYI	RGATCY	2 cut(s)	6, 237
BsuRI	GGCC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	207
CviJI	RGCY	5 cut(s)	41, 109, 121, 297, 307
CviKI_1	RGCY	5 cut(s)	41, 109, 121, 297, 307
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	89, 234
DpnI	GATC	3 cut(s)	8, 239, 303
DpnII	GATC	3 cut(s)	6, 237, 301
Eco130I	CCWWGG	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	245
FaiI	YATR	2 cut(s)	31, 312
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 93, 125
FblI	GTMKAC	1 cut(s)	340
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	299
HinfI	GANTC	2 cut(s)	139, 284
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	2 cut(s)	193, 341
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	193, 341
HpyAV	CCTTC	3 cut(s)	64, 95, 220
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	89, 234
HpySE526I	ACGT	1 cut(s)	318
KpnI	GGTACC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	6, 237, 301
LpnPI	CCDG	6 cut(s)	21, 76, 166, 193, 278, 312
MaeII	ACGT	1 cut(s)	318
MalI	GATC	3 cut(s)	8, 239, 303
MboI	GATC	3 cut(s)	6, 237, 301
MboII	GAAGA	3 cut(s)	62, 158, 337
MflI	RGATCY	2 cut(s)	6, 237
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	133, 293
MnlI	CCTC	4 cut(s)	15, 249, 252, 324
MseI	TTAA	1 cut(s)	252
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	2 cut(s)	181, 299
MvaI	CCWGG	1 cut(s)	181
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	6, 237, 301
NlaIV	GGNNCC	2 cut(s)	40, 208
PleI	GAGTC	2 cut(s)	133, 292
PpsI	GAGTC	2 cut(s)	133, 292
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	40, 208
PspPI	GGNCC	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	6, 237
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	252
Sau3AI	GATC	3 cut(s)	6, 237, 301
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	133, 293
ScrFI	CCNGG	2 cut(s)	181, 299
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	6 cut(s)	95, 111, 212, 260, 309, 321
Sse9I	AATT	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	179, 297
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	321
TasI	AATT	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
XapI	RAATTY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.