Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

22423401 .. 22424240

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G017540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCGGATGAGGTTGTGTTGTTGGATTTCTGGCCCAGCCCTTTTGGGGTGAGGCTGAGGATCGCTCTGGCCGAGAAAGGCATCAAGTACGAGTACAAGGAAGAGGATCTGGAGAACAAGAGCCCACTCTTGCTGCAGTCGAATCCGGTTTACAAGCAGATCCCGGTTCTCATTCACAAGGGCAAAGCGGTCTGCGAGTCCCTTATTGCGCTTCAGTACATTGACGAGGTTTGGAACGATAAGGCTCCACTCTTGCCCTTTGATCCTTACCTTAGATCCCAAGCAAAGTTCTGGGCCGACTTCGTGGACAAGAAGATATATGATTTGGGGAGGAAGGCATGCACAACTAAAGGAGAAGAACACGAAGCGGCACAGAAGGAATTCATGAACTGCATTAAGTTGCTAGAAGTGGAGCTTGGAGACAAGCCCTTCTTTGGGGGCGACACCCTCGGGGTCGTGGACGTGTCACTCGTTCCTTTCTTTTCCTGGTTCTCTGTGTATGAGAAATTTGGTAACTTCAGTATAGAGCTGGAGTGCCCAAAGTTCAATGCTTGGATTAAAAGGTGTTTGGAGAAGGAAAGTGTGTCCAAGTCCCTTCCAGACCAGGATAAGATCTTTGACATTGTTGTGGATATCAGGAAAAAGCTTGGAATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

219

Amino Acids

25.24

Weight (kDa)

5.2

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	5 - 76	1.9e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	12 - 76	4.3e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	13 - 76	1.6e-12	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	116 - 192	8.6e-07	Glutathione S-transferase, C-terminal domain
GST_C_2	PF13410	120 - 188	5.5e-12	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 188, 368
AclWI	GGATC	5 cut(s)	68, 114, 154, 257, 270
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	380, 506
AcuI	CTGAAG	2 cut(s)	197, 502
AfaI	GTAC	3 cut(s)	89, 95, 218
AfiI	CCNNNNNNNGG	3 cut(s)	46, 434, 435
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	547
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	485, 603
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	3 cut(s)	415, 529, 646
AluI	AGCT	3 cut(s)	415, 529, 646
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	5 cut(s)	68, 114, 154, 257, 270
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	3 cut(s)	32, 69, 294
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	2 cut(s)	380, 506
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	33, 294
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	120
BciT130I	CCWGG	2 cut(s)	487, 605
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	134
BglII	AGATCT	1 cut(s)	612
BisI	GCNGC	2 cut(s)	134, 369
BlsI	GCNGC	2 cut(s)	135, 370
Bme1390I	CCNGG	3 cut(s)	164, 487, 605
BmeT110I	CYCGRG	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	2 cut(s)	33, 294
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	3 cut(s)	164, 487, 605
BmsI	GCATC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	2 cut(s)	131, 551
Bpu10I	CCTNAGC	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	448
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 434, 435
BseBI	CCWGG	2 cut(s)	487, 605
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	3 cut(s)	46, 434, 435
BseMII	CTCAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	3 cut(s)	34, 71, 296
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	2 cut(s)	146, 164
BslFI	GGGAC	2 cut(s)	184, 577
BslI	CCNNNNNNNGG	3 cut(s)	46, 434, 435
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	184, 577
BsnI	GGCC	3 cut(s)	34, 71, 296
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	2 cut(s)	125, 539
Bsp143I	GATC	6 cut(s)	60, 106, 159, 262, 275, 612
BspACI	CCGC	3 cut(s)	5, 188, 368
BspANI	GGCC	3 cut(s)	34, 71, 296
BspCNI	CTCAG	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	5 cut(s)	68, 114, 154, 257, 270
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	6 cut(s)	60, 106, 159, 262, 275, 612
Bst2UI	CCWGG	2 cut(s)	487, 605
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	56, 272
BstF5I	GGATG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	6 cut(s)	63, 109, 162, 265, 278, 615
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	6 cut(s)	60, 106, 159, 262, 275, 612
BstNI	CCWGG	2 cut(s)	487, 605
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	3 cut(s)	162, 485, 603
BstSFI	CTRYAG	1 cut(s)	134
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	4 cut(s)	106, 159, 275, 612
BstYI	RGATCY	4 cut(s)	106, 159, 275, 612
BsuRI	GGCC	3 cut(s)	34, 71, 296
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	340
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	33, 294
Csp6I	GTAC	3 cut(s)	88, 94, 217
CviAII	CATG	2 cut(s)	339, 385
CviQI	GTAC	3 cut(s)	88, 94, 217
DdeI	CTNAG	2 cut(s)	56, 272
DpnI	GATC	6 cut(s)	62, 108, 161, 264, 277, 614
DpnII	GATC	6 cut(s)	60, 106, 159, 262, 275, 612
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	20
Eco24I	GRGCYC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	634
Eco57I	CTGAAG	2 cut(s)	197, 502
Eco88I	CYCGRG	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	485, 603
EcoRV	GATATC	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	2 cut(s)	342, 388
FaiI	YATR	6 cut(s)	319, 321, 340, 386, 501, 524
FalI	AAGNNNNNCTT	4 cut(s)	399, 431, 416, 448
FaqI	GGGAC	2 cut(s)	184, 577
FatI	CATG	2 cut(s)	338, 384
Fnu4HI	GCNGC	2 cut(s)	134, 369
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	134, 369
FspBI	CTAG	1 cut(s)	404
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	2 cut(s)	134, 369
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	2 cut(s)	131, 551
HaeIII	GGCC	3 cut(s)	34, 71, 296
HapII	CCGG	2 cut(s)	146, 164
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	342, 388
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	2 cut(s)	142, 197
HpaII	CCGG	2 cut(s)	146, 164
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	3 cut(s)	151, 307, 460
Hpy188III	TCNNGA	4 cut(s)	110, 385, 599, 637
Hpy8I	GTNNAC	3 cut(s)	151, 307, 460
HpyAV	CCTTC	5 cut(s)	328, 370, 439, 568, 605
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	3 cut(s)	136, 342, 393
HpyF3I	CTNAG	2 cut(s)	56, 272
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	342, 388
HspAI	GCGC	1 cut(s)	209
Kzo9I	GATC	6 cut(s)	60, 106, 159, 262, 275, 612
LmnI	GCTCC	2 cut(s)	250, 412
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	465, 512
MalI	GATC	6 cut(s)	62, 108, 161, 264, 277, 614
MboI	GATC	6 cut(s)	60, 106, 159, 262, 275, 612
MboII	GAAGA	3 cut(s)	113, 325, 368
MflI	RGATCY	4 cut(s)	106, 159, 275, 612
MhlI	GDGCHC	2 cut(s)	125, 539
MluCI	AATT	2 cut(s)	380, 506
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	4, 45, 51, 97, 220, 324, 458
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	2 cut(s)	396, 558
MslI	CAYNNNNRTG	1 cut(s)	626
MspI	CCGG	2 cut(s)	146, 164
MspR9I	CCNGG	3 cut(s)	164, 487, 605
MvaI	CCWGG	2 cut(s)	487, 605
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	6 cut(s)	60, 106, 159, 262, 275, 612
NlaIII	CATG	2 cut(s)	342, 388
NlaIV	GGNNCC	1 cut(s)	246
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	465
NspI	RCATGY	1 cut(s)	342
PaeI	GCATGC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	384
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 468
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	135, 370
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
Psp6I	CCWGG	2 cut(s)	485, 603
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	2 cut(s)	485, 603
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	33, 294
PstI	CTGCAG	1 cut(s)	138
PsuI	RGATCY	4 cut(s)	106, 159, 275, 612
RsaI	GTAC	3 cut(s)	89, 95, 218
RsaNI	GTAC	3 cut(s)	88, 94, 217
RseI	CAYNNNNRTG	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	396, 558
SatI	GCNGC	2 cut(s)	134, 369
Sau3AI	GATC	6 cut(s)	60, 106, 159, 262, 275, 612
Sau96I	GGNCC	2 cut(s)	33, 294
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	164, 487, 605
SduI	GDGCHC	2 cut(s)	125, 539
SetI	ASST	8 cut(s)	15, 231, 273, 417, 465, 531, 566, 648
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	626
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	2 cut(s)	380, 506
SsiI	CCGC	3 cut(s)	5, 188, 368
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	3 cut(s)	162, 485, 603
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	1 cut(s)	140
TasI	AATT	2 cut(s)	380, 506
TatI	WGTACW	2 cut(s)	93, 216
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	396, 558
Tru9I	TTAA	2 cut(s)	396, 558
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	2 cut(s)	373, 401
XapI	RAATTY	2 cut(s)	380, 506
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.