Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001348.1

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

71090 .. 71605

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001348.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggatcacgaagtggtgcttcttgggttctggaccagtccttatgtcatgagagtgaaaattgctctggaggagaagggagttcactacaagtatttggaagaagatcttttccataataagagccccttgcttctgaaaacgaaccctgtgcataagaaagttccagttttcatccataagggcaactccaaccattgggtgccataccagaacagcgctaaaaatgagacttttcatctccaacgggccaatttagggggatctggttctggaattataggacttggccctaaaccaagtctcatatatgagactttttcagaaccgagacccgtgtacagtgtattggggccacaagttgggttgtggcagcccaaggccggacgaaacgcgcgagagaagaagaagatagtgacgcgctgggctggagggaagaaaagggatgaacgcgcgcatggtgcgctggaggaagaagaagattgcaaatcagctgctgctgtgggccccgcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

171

Amino Acids

19.13

Weight (kDa)

9.47

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	2 cut(s)	198, 362
AccII	CGCG	5 cut(s)	395, 397, 421, 453, 455
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	12, 271
AdeI	CACNNNGTG	1 cut(s)	13
AfaI	GTAC	1 cut(s)	341
AfeI	AGCGCT	1 cut(s)	220
AfiI	CCNNNNNNNGG	4 cut(s)	198, 258, 362, 383
AluBI	AGCT	1 cut(s)	494
AluI	AGCT	1 cut(s)	494
Alw26I	GTCTC	4 cut(s)	224, 308, 308, 325
AlwI	GGATC	2 cut(s)	12, 271
AlwNI	CAGNNNCTG	1 cut(s)	497
Aor51HI	AGCGCT	1 cut(s)	220
AoxI	GGCC	5 cut(s)	249, 289, 353, 381, 505
ApaI	GGGCCC	1 cut(s)	509
ApeKI	GCWGC	3 cut(s)	373, 494, 497
AspLEI	GCGC	6 cut(s)	221, 397, 423, 455, 457, 466
AspS9I	GGNCC	6 cut(s)	33, 249, 290, 353, 505, 506
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	2 cut(s)	128, 509
BbvI	GCAGC	3 cut(s)	385, 481, 484
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BcoDI	GTCTC	4 cut(s)	224, 308, 308, 325
BfoI	RGCGCY	1 cut(s)	222
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	3 cut(s)	374, 495, 498
BlsI	GCNGC	3 cut(s)	375, 496, 499
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	6 cut(s)	33, 249, 290, 353, 505, 506
BmiI	GGNNCC	4 cut(s)	204, 354, 507, 508
BpmI	CTGGAG	3 cut(s)	89, 450, 488
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 258, 362, 383
Bse1I	ACTGG	2 cut(s)	36, 167
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	2 cut(s)	174, 451
BseLI	CCNNNNNNNGG	4 cut(s)	198, 258, 362, 383
BseNI	ACTGG	2 cut(s)	36, 167
BsePI	GCGCGC	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	509
BseXI	GCAGC	3 cut(s)	385, 481, 484
BseYI	CCCAGC	1 cut(s)	423
Bsh1236I	CGCG	5 cut(s)	395, 397, 421, 453, 455
BshFI	GGCC	5 cut(s)	251, 291, 355, 383, 507
BshNI	GGYRCC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	384
BslI	CCNNNNNNNGG	4 cut(s)	198, 258, 362, 383
BsmAI	GTCTC	4 cut(s)	224, 308, 308, 325
BsnI	GGCC	5 cut(s)	251, 291, 355, 383, 507
Bso31I	GGTCTC	1 cut(s)	325
Bsp120I	GGGCCC	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	128, 509
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	4, 106, 263
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	5 cut(s)	251, 291, 355, 383, 507
BspFNI	CGCG	5 cut(s)	395, 397, 421, 453, 455
BspHI	TCATGA	1 cut(s)	48
BspLI	GGNNCC	4 cut(s)	204, 354, 507, 508
BspPI	GGATC	2 cut(s)	12, 271
BspT107I	GGYRCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	36, 167
BssECI	CCNNGG	1 cut(s)	378
BssHII	GCGCGC	1 cut(s)	453
BssMI	GATC	3 cut(s)	4, 106, 263
BssT1I	CCWWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	174, 451
BstFNI	CGCG	5 cut(s)	395, 397, 421, 453, 455
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	6 cut(s)	221, 397, 423, 455, 457, 466
BstKTI	GATC	3 cut(s)	7, 109, 266
BstMAI	GTCTC	4 cut(s)	224, 308, 308, 325
BstMBI	GATC	3 cut(s)	4, 106, 263
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 463
BstSLI	GKGCMC	1 cut(s)	509
BstUI	CGCG	5 cut(s)	395, 397, 421, 453, 455
BstV1I	GCAGC	3 cut(s)	385, 481, 484
BstX2I	RGATCY	2 cut(s)	106, 263
BstYI	RGATCY	2 cut(s)	106, 263
BsuRI	GGCC	5 cut(s)	251, 291, 355, 383, 507
BtsCI	GGATG	2 cut(s)	174, 451
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	1 cut(s)	455
CaiI	CAGNNNCTG	1 cut(s)	497
CciI	TCATGA	1 cut(s)	48
CfoI	GCGC	6 cut(s)	221, 397, 423, 455, 457, 466
Cfr13I	GGNCC	6 cut(s)	33, 249, 290, 353, 505, 506
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	2 cut(s)	49, 458
CviJI	RGCY	9 cut(s)	126, 251, 291, 355, 376, 383, 428, 494, 507
CviKI_1	RGCY	9 cut(s)	126, 251, 291, 355, 376, 383, 428, 494, 507
CviQI	GTAC	1 cut(s)	340
DpnI	GATC	3 cut(s)	6, 108, 265
DpnII	GATC	3 cut(s)	4, 106, 263
DraIII	CACNNNGTG	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	2 cut(s)	128, 509
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	33
Eco47III	AGCGCT	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	128, 509
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	2 cut(s)	52, 461
FalI	AAGNNNNNCTT	5 cut(s)	35, 93, 125, 113, 145
FatI	CATG	2 cut(s)	48, 457
Fnu4HI	GCNGC	3 cut(s)	374, 495, 498
FokI	GGATG	2 cut(s)	161, 458
FriOI	GRGCYC	2 cut(s)	128, 509
Fsp4HI	GCNGC	3 cut(s)	374, 495, 498
GlaI	GCGC	6 cut(s)	220, 396, 422, 454, 456, 465
GluI	GCNGC	3 cut(s)	374, 495, 498
GsaI	CCCAGC	1 cut(s)	427
GsuI	CTGGAG	3 cut(s)	89, 450, 488
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	5 cut(s)	251, 291, 355, 383, 507
HapII	CCGG	1 cut(s)	384
HgaI	GACGC	1 cut(s)	427
HhaI	GCGC	6 cut(s)	221, 397, 423, 455, 457, 466
Hin1II	CATG	2 cut(s)	52, 461
Hin6I	GCGC	6 cut(s)	219, 395, 421, 453, 455, 464
HinP1I	GCGC	6 cut(s)	219, 395, 421, 453, 455, 464
HpaII	CCGG	1 cut(s)	384
Hpy166II	GTNNAC	2 cut(s)	85, 340
Hpy188I	TCNGA	2 cut(s)	138, 325
Hpy188III	TCNNGA	5 cut(s)	8, 31, 49, 68, 273
Hpy8I	GTNNAC	2 cut(s)	85, 340
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	2 cut(s)	154, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 463
Hsp92II	CATG	2 cut(s)	52, 461
HspAI	GCGC	6 cut(s)	219, 395, 421, 453, 455, 464
Kzo9I	GATC	3 cut(s)	4, 106, 263
Lsp1109I	GCAGC	3 cut(s)	385, 481, 484
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	3 cut(s)	6, 108, 265
MboI	GATC	3 cut(s)	4, 106, 263
MboII	GAAGA	9 cut(s)	113, 116, 415, 418, 421, 448, 485, 488, 491
MflI	RGATCY	2 cut(s)	106, 263
MhlI	GDGCHC	2 cut(s)	128, 509
MluCI	AATT	3 cut(s)	60, 253, 276
MmeI	TCCRAC	2 cut(s)	216, 268
MnlI	CCTC	3 cut(s)	64, 425, 463
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	384
MvnI	CGCG	5 cut(s)	395, 397, 421, 453, 455
MwoI	GCNNNNNNNGC	2 cut(s)	461, 463
NdeII	GATC	3 cut(s)	4, 106, 263
NlaIII	CATG	2 cut(s)	52, 461
NlaIV	GGNNCC	4 cut(s)	204, 354, 507, 508
NmuCI	GTSAC	1 cut(s)	415
PagI	TCATGA	1 cut(s)	48
PauI	GCGCGC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	394
PflMI	CCANNNNNTGG	2 cut(s)	198, 362
PkrI	GCNGC	3 cut(s)	375, 496, 499
PspFI	CCCAGC	1 cut(s)	423
PspN4I	GGNNCC	4 cut(s)	204, 354, 507, 508
PspOMI	GGGCCC	1 cut(s)	505
PspPI	GGNCC	6 cut(s)	33, 249, 290, 353, 505, 506
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	106, 263
PteI	GCGCGC	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	53
SatI	GCNGC	3 cut(s)	374, 495, 498
Sau3AI	GATC	3 cut(s)	4, 106, 263
Sau96I	GGNCC	6 cut(s)	33, 249, 290, 353, 505, 506
SduI	GDGCHC	2 cut(s)	128, 509
SetI	ASST	1 cut(s)	496
SinI	GGWCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	60, 253, 276
SsiI	CCGC	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	344
TasI	AATT	3 cut(s)	60, 253, 276
TatI	WGTACW	1 cut(s)	339
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	373, 494, 497
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	3 cut(s)	163, 227, 462
TspRI	CASTG	1 cut(s)	349
Van91I	CCANNNNNTGG	2 cut(s)	198, 362
VpaK11BI	GGWCC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.