Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007802.1

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

4792 .. 6084

Gene Structure 1293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007802.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atggcagatgaggttgtcttgttggacttctggcctagcccatttgggatgaggctgaggatagctctggccgagaaaggcgtcaagtacgagtacaaggaagaggacctgaggaacaagagcccactgttgctccagtcgaacccggttcacaagaagatcccggttctcattcacaatggcaaagccgtctgcgagtccatcattgctcttcagtacattgacgaggtttggactaataagccactcttgcccgccgatccttacctcagatcccaagccaagttctgggctgactttgtggacaagaagatatatgatctagggagaaagacatggacaagtaagggagatgaccaggaggcagctaagaaggaattcattgactgcgttaagttgctagaagttgagcttggggacaagcctttctttggtggtgagaccctcggatttgtggacgtggcacttgttcctttctattcatggttctctgtgtatgagaaattcggcaacttcagtattgaaccagagtgcccgaagttcattgcttgggttaagaggtgtttggagaaggagagtgtgtcaaagtctgttcctgaccaggacaaggtctgtgactttgttgtggagatgaggaagaagcttggaattgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

218

Amino Acids

25.12

Weight (kDa)

5.64

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	288
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	3 cut(s)	154, 254, 267
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	377, 503
AcuI	CTGAAG	2 cut(s)	197, 499
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	3 cut(s)	89, 95, 218
AfiI	CCNNNNNNNGG	3 cut(s)	288, 431, 607
AgsI	TTSAA	1 cut(s)	524
AjiI	CACGTC	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	357, 600
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	4 cut(s)	65, 368, 412, 643
AluI	AGCT	4 cut(s)	65, 368, 412, 643
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	3 cut(s)	154, 254, 267
AoxI	GGCC	2 cut(s)	32, 69
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	2 cut(s)	377, 503
Asp700I	GAANNNNTTC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	2 cut(s)	146, 164
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	106
AxyI	CCTNAGG	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	125
BbvCI	CCTCAGC	1 cut(s)	56
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	2 cut(s)	359, 602
BcnI	CCSGG	2 cut(s)	146, 164
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	3 cut(s)	36, 323, 401
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	4 cut(s)	146, 164, 359, 602
Bme18I	GGWCC	1 cut(s)	106
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	4 cut(s)	146, 164, 359, 602
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	56
BpuMI	CCSGG	2 cut(s)	146, 164
BsaHI	GRCGYC	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	445
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 566, 596
Bsc4I	CCNNNNNNNGG	3 cut(s)	288, 431, 607
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	110
Bse3DI	GCAATG	2 cut(s)	204, 543
BseBI	CCWGG	2 cut(s)	359, 602
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	3 cut(s)	288, 431, 607
BseMI	GCAATG	2 cut(s)	204, 543
BseMII	CTCAG	3 cut(s)	47, 101, 283
BseNI	ACTGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	536
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	2 cut(s)	34, 71
BsiSI	CCGG	2 cut(s)	146, 164
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	288, 431, 607
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	34, 71
Bso31I	GGTCTC	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	125, 536
Bsp143I	GATC	4 cut(s)	159, 259, 272, 319
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	34, 71
BspCNI	CTCAG	3 cut(s)	48, 102, 282
BspPI	GGATC	3 cut(s)	154, 254, 267
BspQI	GCTCTTC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	434
BsrDI	GCAATG	2 cut(s)	204, 543
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	4 cut(s)	159, 259, 272, 319
BssNI	GRCGYC	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	359, 602
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	2 cut(s)	96, 216
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	4 cut(s)	56, 110, 269, 369
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	4 cut(s)	162, 262, 275, 322
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	4 cut(s)	159, 259, 272, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	2 cut(s)	359, 602
BstSCI	CCNGG	4 cut(s)	144, 162, 357, 600
BstSLI	GKGCMC	1 cut(s)	536
BstV1I	GCAGC	1 cut(s)	377
BstX2I	RGATCY	2 cut(s)	159, 272
BstYI	RGATCY	2 cut(s)	159, 272
Bsu36I	CCTNAGG	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	34, 71
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	88, 94, 217
CviAII	CATG	2 cut(s)	336, 483
CviQI	GTAC	3 cut(s)	88, 94, 217
DdeI	CTNAG	4 cut(s)	56, 110, 269, 369
DpnI	GATC	4 cut(s)	161, 261, 274, 321
DpnII	GATC	4 cut(s)	159, 259, 272, 319
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	96, 216
EarI	CTCTTC	2 cut(s)	96, 216
Eco24I	GRGCYC	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	197, 499
Eco81I	CCTNAGG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	357, 600
EcoT38I	GRGCYC	1 cut(s)	125
FaeI	CATG	2 cut(s)	339, 486
FaiI	YATR	5 cut(s)	316, 318, 337, 484, 498
FalI	AAGNNNNNCTT	6 cut(s)	233, 265, 396, 428, 413, 445
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	2 cut(s)	335, 482
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	3 cut(s)	36, 323, 401
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	34, 71
HapII	CCGG	2 cut(s)	146, 164
HgaI	GACGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	339, 486
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	146, 164
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	3 cut(s)	151, 304, 457
Hpy188I	TCNGA	2 cut(s)	272, 449
Hpy188III	TCNNGA	1 cut(s)	596
Hpy8I	GTNNAC	3 cut(s)	151, 304, 457
HpyAV	CCTTC	2 cut(s)	367, 565
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	4 cut(s)	56, 110, 269, 369
HpySE526I	ACGT	1 cut(s)	459
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	339, 486
Kzo9I	GATC	4 cut(s)	159, 259, 272, 319
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	1 cut(s)	377
MaeI	CTAG	3 cut(s)	36, 323, 401
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	614
MalI	GATC	4 cut(s)	161, 261, 274, 321
MboI	GATC	4 cut(s)	159, 259, 272, 319
MboII	GAAGA	5 cut(s)	113, 169, 203, 322, 649
MflI	RGATCY	2 cut(s)	159, 272
MhlI	GDGCHC	2 cut(s)	125, 536
MluCI	AATT	3 cut(s)	377, 503, 648
MlyI	GAGTC	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	2 cut(s)	393, 555
MspI	CCGG	2 cut(s)	146, 164
MspR9I	CCNGG	4 cut(s)	146, 164, 359, 602
MvaI	CCWGG	2 cut(s)	359, 602
MwoI	GCNNNNNNNGC	1 cut(s)	250
NciI	CCSGG	2 cut(s)	146, 164
NdeII	GATC	4 cut(s)	159, 259, 272, 319
NlaIII	CATG	2 cut(s)	339, 486
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	614
PciSI	GCTCTTC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	377
PflFI	GACNNNGTC	1 cut(s)	608
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	106
Psp6I	CCWGG	2 cut(s)	357, 600
PspGI	CCWGG	2 cut(s)	357, 600
PspPI	GGNCC	1 cut(s)	106
PspPPI	RGGWCCY	1 cut(s)	106
PsuI	RGATCY	2 cut(s)	159, 272
PsyI	GACNNNGTC	1 cut(s)	608
RsaI	GTAC	3 cut(s)	89, 95, 218
RsaNI	GTAC	3 cut(s)	88, 94, 217
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	393, 555
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	4 cut(s)	159, 259, 272, 319
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	4 cut(s)	146, 164, 359, 602
SduI	GDGCHC	2 cut(s)	125, 536
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	3 cut(s)	377, 503, 648
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	3 cut(s)	36, 323, 401
StyD4I	CCNGG	4 cut(s)	144, 162, 357, 600
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	1 cut(s)	140
TasI	AATT	3 cut(s)	377, 503, 648
TatI	WGTACW	2 cut(s)	93, 216
Tru1I	TTAA	2 cut(s)	393, 555
Tru9I	TTAA	2 cut(s)	393, 555
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	370, 471, 532
TspRI	CASTG	1 cut(s)	132
Tth111I	GACNNNGTC	1 cut(s)	608
Van91I	CCANNNNNTGG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	2 cut(s)	377, 503
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	3 cut(s)	36, 323, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.