Rroxscaffold_1G00052160

Glutathione S-transferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
72845402 .. 72846997
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052160.1

Sequence Viewer

Length: 657 bp
ATGGCCGATGAGGTTGTCTTGTTGGACTTCTGGCCTAGCCCATTTGGGATGAGGCTGAGGATAGCTCTGGCCGAGAAAGGTGTCAAGTACGAGTACAAGGAAGAGGACCTGAGGAACAAGAGCCCACTGTTGCTCCAGTCGAACCCGGTTCACAAGAAGATCCCGGTTCTCATTCACAATGGCAAAGCCGTCTGCGAGTCCGTCATTGCTCTTCAGTACATTGACGAGGTTTGGACTAATAAGCCACTCTTGCCCTCCGATCCTTACCTCAGATCCCAAGCCAAGTTCTGGGCTGACTTTGTGGACAAGAAGATATATGATGTAGGGAGAAAGACATGGACAACTAAAGGAGATGACCAGGAGGCAGCTAAGAAGGAATTCATTGACTGCATTAAGTTGCTGGAAGTGGAGCTTGGGGACAAGCCTTTCTTTGGTGGTGAGACCCTCGGATTTGTGGATGTGACACTTGTTCCTTTCTATTCGTGGTTCTCTGTGTATGAGAAATTCGGCAACTTCAGTATTGAACCAGAGTGCTCGAAGTTCATTGCTTGGGTTAAGAGGTGTTTGGAGAAGGAGAGTGTGTCAAAGTCTCTTCCTGACCAGGACAAGGTCTGTGACTTTGTTGTGGAGATGAGGAAGAAGCTTGGAATTGAGTAG

Protein Analysis

218

Amino Acids

25.17

Weight (kDa)

5.64

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 5 - 76 4.8e-20 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 12 - 76 2.3e-12 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 13 - 76 2.5e-12 Glutathione S-transferase, N-terminal domain
GST_C_2 PF13410 121 - 187 1.9e-08 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 288
AclWI GGATC 3 cut(s) 154, 254, 267
AcoI YGGCCR 2 cut(s) 3, 69
AcsI RAATTY 2 cut(s) 377, 503
AcuI CTGAAG 2 cut(s) 197, 499
AfaI GTAC 3 cut(s) 89, 95, 218
AfiI CCNNNNNNNGG 3 cut(s) 288, 431, 607
AgsI TTSAA 1 cut(s) 524
AjnI CCWGG 2 cut(s) 357, 600
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
AluBI AGCT 4 cut(s) 65, 368, 412, 643
AluI AGCT 4 cut(s) 65, 368, 412, 643
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 2 cut(s) 434, 594
AlwI GGATC 3 cut(s) 154, 254, 267
AoxI GGCC 3 cut(s) 3, 32, 69
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 377, 503
Asp700I GAANNNNTTC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 2 cut(s) 146, 164
AsuHPI GGTGA 1 cut(s) 449
AvaII GGWCC 1 cut(s) 106
AxyI CCTNAGG 1 cut(s) 110
BanII GRGCYC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 536
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 377
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 359, 602
BcnI CCSGG 2 cut(s) 146, 164
BcoDI GTCTC 2 cut(s) 434, 594
BfaI CTAG 1 cut(s) 36
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
Bme1390I CCNGG 4 cut(s) 146, 164, 359, 602
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmrFI CCNGG 4 cut(s) 146, 164, 359, 602
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 56
BpuMI CCSGG 2 cut(s) 146, 164
BsaI GGTCTC 1 cut(s) 434
BsaJI CCNNGG 1 cut(s) 445
BsaXI ACNNNNNCTCC 4 cut(s) 117, 147, 566, 596
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 431, 607
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 110
Bse3DI GCAATG 2 cut(s) 204, 543
BseBI CCWGG 2 cut(s) 359, 602
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 2 cut(s) 54, 463
BseLI CCNNNNNNNGG 3 cut(s) 288, 431, 607
BseMI GCAATG 2 cut(s) 204, 543
BseMII CTCAG 3 cut(s) 47, 101, 283
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 377
BshFI GGCC 3 cut(s) 5, 34, 71
BsiHKAI GWGCWC 1 cut(s) 536
BsiSI CCGG 2 cut(s) 146, 164
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 3 cut(s) 288, 431, 607
BsmAI GTCTC 2 cut(s) 434, 594
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 3 cut(s) 5, 34, 71
Bso31I GGTCTC 1 cut(s) 434
Bsp1286I GDGCHC 2 cut(s) 125, 536
Bsp143I GATC 3 cut(s) 159, 259, 272
BspANI GGCC 3 cut(s) 5, 34, 71
BspCNI CTCAG 3 cut(s) 48, 102, 282
BspPI GGATC 3 cut(s) 154, 254, 267
BspQI GCTCTTC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 434
BsrDI GCAATG 2 cut(s) 204, 543
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 3 cut(s) 159, 259, 272
Bst2UI CCWGG 2 cut(s) 359, 602
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 3 cut(s) 96, 216, 597
BstDEI CTNAG 4 cut(s) 56, 110, 269, 369
BstF5I GGATG 2 cut(s) 54, 463
BstKTI GATC 3 cut(s) 162, 262, 275
BstMAI GTCTC 2 cut(s) 434, 594
BstMBI GATC 3 cut(s) 159, 259, 272
BstMWI GCNNNNNNNGC 1 cut(s) 250
BstNI CCWGG 2 cut(s) 359, 602
BstSCI CCNGG 4 cut(s) 144, 162, 357, 600
BstV1I GCAGC 1 cut(s) 377
BstX2I RGATCY 2 cut(s) 159, 272
BstYI RGATCY 2 cut(s) 159, 272
Bsu36I CCTNAGG 1 cut(s) 110
BsuRI GGCC 3 cut(s) 5, 34, 71
BtsCI GGATG 2 cut(s) 54, 463
BtsIMutI CAGTG 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 3 cut(s) 88, 94, 217
CviAII CATG 1 cut(s) 336
CviQI GTAC 3 cut(s) 88, 94, 217
DdeI CTNAG 4 cut(s) 56, 110, 269, 369
DpnI GATC 3 cut(s) 161, 261, 274
DpnII GATC 3 cut(s) 159, 259, 272
EaeI YGGCCR 2 cut(s) 3, 69
Eam1104I CTCTTC 3 cut(s) 96, 216, 597
EarI CTCTTC 3 cut(s) 96, 216, 597
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 197, 499
Eco81I CCTNAGG 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 357, 600
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 1 cut(s) 339
FaiI YATR 4 cut(s) 316, 318, 337, 498
FalI AAGNNNNNCTT 6 cut(s) 233, 265, 396, 428, 413, 445
FaqI GGGAC 1 cut(s) 431
FatI CATG 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 2 cut(s) 61, 470
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 366
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 3 cut(s) 5, 34, 71
HapII CCGG 2 cut(s) 146, 164
Hin1II CATG 1 cut(s) 339
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 146, 164
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 2 cut(s) 151, 304
Hpy188I TCNGA 3 cut(s) 259, 272, 449
Hpy188III TCNNGA 1 cut(s) 596
Hpy8I GTNNAC 2 cut(s) 151, 304
HpyAV CCTTC 2 cut(s) 367, 565
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 250
HpyF3I CTNAG 4 cut(s) 56, 110, 269, 369
Hsp92II CATG 1 cut(s) 339
Kzo9I GATC 3 cut(s) 159, 259, 272
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 2 cut(s) 138, 409
Lsp1109I GCAGC 1 cut(s) 377
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 460, 614
MalI GATC 3 cut(s) 161, 261, 274
MboI GATC 3 cut(s) 159, 259, 272
MboII GAAGA 6 cut(s) 113, 169, 203, 322, 584, 649
MflI RGATCY 2 cut(s) 159, 272
MhlI GDGCHC 2 cut(s) 125, 536
MluCI AATT 3 cut(s) 377, 503, 648
MlyI GAGTC 1 cut(s) 206
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 2 cut(s) 393, 555
MspI CCGG 2 cut(s) 146, 164
MspR9I CCNGG 4 cut(s) 146, 164, 359, 602
MvaI CCWGG 2 cut(s) 359, 602
MwoI GCNNNNNNNGC 1 cut(s) 250
NciI CCSGG 2 cut(s) 146, 164
NdeII GATC 3 cut(s) 159, 259, 272
NlaIII CATG 1 cut(s) 339
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 460, 614
PciSI GCTCTTC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 377
PflFI GACNNNGTC 1 cut(s) 608
PflMI CCANNNNNTGG 1 cut(s) 288
PkrI GCNGC 1 cut(s) 367
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 357, 600
PspGI CCWGG 2 cut(s) 357, 600
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PsuI RGATCY 2 cut(s) 159, 272
PsyI GACNNNGTC 1 cut(s) 608
RsaI GTAC 3 cut(s) 89, 95, 218
RsaNI GTAC 3 cut(s) 88, 94, 217
SapI GCTCTTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 393, 555
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 3 cut(s) 159, 259, 272
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 4 cut(s) 146, 164, 359, 602
SduI GDGCHC 2 cut(s) 125, 536
SinI GGWCC 1 cut(s) 106
Sse9I AATT 3 cut(s) 377, 503, 648
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 4 cut(s) 144, 162, 357, 600
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 140, 536
TasI AATT 3 cut(s) 377, 503, 648
TatI WGTACW 2 cut(s) 93, 216
Tru1I TTAA 2 cut(s) 393, 555
Tru9I TTAA 2 cut(s) 393, 555
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 2 cut(s) 460, 614
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 2 cut(s) 460, 614
TspDTI ATGAA 2 cut(s) 370, 532
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 1 cut(s) 132
Tth111I GACNNNGTC 1 cut(s) 608
Van91I CCANNNNNTGG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 2 cut(s) 377, 503
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.