Rorug05G0098500

Glutathione S-transferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
8715376 .. 8715690
315 bp
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UTR
Exon/CDS
Intron
Rorug05G0098500.1

Sequence Viewer

Length: 315 bp
ATGAATATAGATGGTGCATTGAATTTGGGGCAGGGTGTGTATGGTACTGGAGCCGTATGCCGCAATGAGCTAGGTGACTGTGTTGGCGTACTGGCAGTACCAGGCGTTGGATTTGTGAGTCCCAAGACTAGTGAATTTATTGCTCTTGTGAATGGTCTGCATTTTTGCGTTCAAGCTGGCTTCTCACACTTGGAGATTGAAGGGGATGCCAAAAACATATTCTTGACTTTGGATTCTATCCATGACGACTTAAGCGCAGATGGAGCATTAGTTGATGGAAGCAAAGGTACTTTTAAGTCATATTTAGTCTTATAG

Protein Analysis

104

Amino Acids

10.77

Weight (kDa)

4.5

Isoelectric Point (pI)

21.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 80 6.1e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 107
AciI CCGC 1 cut(s) 61
AcsI RAATTY 2 cut(s) 22, 134
AfaI GTAC 4 cut(s) 46, 90, 99, 289
AfiI CCNNNNNNNGG 1 cut(s) 107
AflII CTTAAG 1 cut(s) 250
AgsI TTSAA 3 cut(s) 22, 173, 200
AhlI ACTAGT 1 cut(s) 128
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 2 cut(s) 70, 176
AluI AGCT 2 cut(s) 70, 176
ApoI RAATTY 2 cut(s) 22, 134
AspLEI GCGC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 86
BarI GAAGNNNNNNTAC 2 cut(s) 271, 303
BccI CCATC 3 cut(s) 5, 254, 269
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 2 cut(s) 71, 129
BfrI CTTAAG 1 cut(s) 250
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 52, 96
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 2 cut(s) 52, 96
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 105
BspACI CCGC 1 cut(s) 61
BspLI GGNNCC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 52, 96
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 257
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 1 cut(s) 257
Csp6I GTAC 4 cut(s) 45, 89, 98, 288
CviAII CATG 1 cut(s) 242
CviJI RGCY 4 cut(s) 53, 70, 176, 180
CviKI_1 RGCY 4 cut(s) 53, 70, 176, 180
CviQI GTAC 4 cut(s) 45, 89, 98, 288
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 245
FaiI YATR 7 cut(s) 8, 42, 58, 218, 243, 301, 313
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 71, 129
GlaI GCGC 1 cut(s) 256
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 69
HhaI GCGC 1 cut(s) 257
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 2 cut(s) 118, 233
HphI GGTGA 1 cut(s) 86
Hpy188III TCNNGA 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 17, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 50, 263
LpnPI CCDG 6 cut(s) 17, 33, 77, 87, 114, 162
LweI GCATC 1 cut(s) 196
MaeI CTAG 2 cut(s) 71, 129
MaeIII GTNAC 1 cut(s) 74
MluCI AATT 2 cut(s) 22, 134
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 88
MseI TTAA 2 cut(s) 251, 294
MspCI CTTAAG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 263
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 107
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 52
RsaI GTAC 4 cut(s) 46, 90, 99, 289
RsaNI GTAC 4 cut(s) 45, 89, 98, 288
SaqAI TTAA 2 cut(s) 251, 294
SatI GCNGC 1 cut(s) 61
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 102
SetI ASST 4 cut(s) 72, 76, 178, 289
SfaNI GCATC 1 cut(s) 196
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SpeI ACTAGT 1 cut(s) 128
Sse9I AATT 2 cut(s) 22, 134
SsiI CCGC 1 cut(s) 61
SspMI CTAG 2 cut(s) 71, 129
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 80
TasI AATT 2 cut(s) 22, 134
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 251, 294
Tru9I TTAA 2 cut(s) 251, 294
TseFI GTSAC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 107
Vha464I CTTAAG 1 cut(s) 250
XapI RAATTY 2 cut(s) 22, 134
XspI CTAG 2 cut(s) 71, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.