Rroxscaffold_1G00052180

glutathione s-transferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
72867856 .. 72868817
962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052180.1

Sequence Viewer

Length: 519 bp
ATGAACCCGATCCACAAGAAGATCCCGGCGCTCATCCATAATGGCAAACCGGTCTGTGAGTCGCTCATCATTGTGCAGTATATTGATGAGGTATGGAAGGATAAGGCTCCTCTGCTTCCCTCTGATCCCTACCAGAGAGCCCAGGCCAGATTCTGGGCCGATTTCATTGACAAGAAGTTATATGATGCGAGCACGAAGATATGGACTACAAAAGGAGAAGAGCTGCAGGCAGCAAAGAAGGAATTCATTGAAGTTCTGAAGGTGTTGGAAGGAGAGCTTGGAGACAAGCCTTTTTTCATGGGTGAGAGATTTGGGTTCCTGGACATTGTTCTCATCACATCCTACAGCTGGTTTCATGCTTATGAGACACTTGGAAACTTCAGTATAGAGGCCGAGTGCCCCAAGCTGATTTCATGGGCCACGAGGTGCTTGCAGAAGGAGAGTGTTTCAAAATCTCTTGCTGACCAGAAAAAGGTTTATGAGTTTGTTGTTGAGTTGAAGAAGAGTCTTGGTGTGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

172

Amino Acids

19.79

Weight (kDa)

6.84

Isoelectric Point (pI)

22.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 2 - 30 2.8e-08 Glutathione S-transferase, N-terminal domain
GST_C PF00043 70 - 146 3.1e-08 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 74 - 141 6.8e-10 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 153
AclWI GGATC 3 cut(s) 4, 16, 119
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 2 cut(s) 278, 364
AdeI CACNNNGTG 1 cut(s) 426
AfiI CCNNNNNNNGG 3 cut(s) 153, 348, 472
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 3 cut(s) 251, 450, 499
AjnI CCWGG 2 cut(s) 141, 318
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 4 cut(s) 223, 277, 348, 406
AluI AGCT 4 cut(s) 223, 277, 348, 406
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 2 cut(s) 276, 359
AlwI GGATC 3 cut(s) 4, 16, 119
AlwNI CAGNNNCTG 1 cut(s) 153
AoxI GGCC 4 cut(s) 144, 156, 390, 417
ApeKI GCWGC 2 cut(s) 223, 230
ApoI RAATTY 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 156, 417
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 142
BauI CACGAG 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 2 cut(s) 210, 242
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 2 cut(s) 143, 320
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 2 cut(s) 276, 359
BfmI CTRYAG 2 cut(s) 224, 343
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 2 cut(s) 224, 231
BlsI GCNGC 2 cut(s) 225, 232
Bme1390I CCNGG 3 cut(s) 26, 143, 320
BmgT120I GGNCC 2 cut(s) 156, 417
BmiI GGNNCC 2 cut(s) 108, 317
BmrFI CCNGG 3 cut(s) 26, 143, 320
BmsI GCATC 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 348, 472
Bse118I RCCGGY 1 cut(s) 49
BseBI CCWGG 2 cut(s) 143, 320
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 33, 338
BseLI CCNNNNNNNGG 3 cut(s) 153, 348, 472
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 401
BseXI GCAGC 2 cut(s) 210, 242
BsgI GTGCAG 1 cut(s) 95
BshFI GGCC 4 cut(s) 146, 158, 392, 419
BshTI ACCGGT 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 2 cut(s) 26, 50
BslI CCNNNNNNNGG 3 cut(s) 153, 348, 472
BsmAI GTCTC 2 cut(s) 276, 359
BsnI GGCC 4 cut(s) 146, 158, 392, 419
Bsp1286I GDGCHC 3 cut(s) 142, 194, 401
Bsp143I GATC 3 cut(s) 9, 21, 124
BspANI GGCC 4 cut(s) 146, 158, 392, 419
BspLI GGNNCC 2 cut(s) 108, 317
BspMAI CTGCAG 1 cut(s) 228
BspPI GGATC 3 cut(s) 4, 16, 119
BspQI GCTCTTC 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 3 cut(s) 9, 21, 124
BssSI CACGAG 1 cut(s) 421
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 2 cut(s) 143, 320
Bst6I CTCTTC 2 cut(s) 213, 497
BstC8I GCNNGC 3 cut(s) 190, 228, 431
BstF5I GGATG 2 cut(s) 33, 338
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 3 cut(s) 12, 24, 127
BstMAI GTCTC 2 cut(s) 276, 359
BstMBI GATC 3 cut(s) 9, 21, 124
BstNI CCWGG 2 cut(s) 143, 320
BstSCI CCNGG 3 cut(s) 24, 141, 318
BstSFI CTRYAG 2 cut(s) 224, 343
BstSLI GKGCMC 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 210, 242
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 4 cut(s) 146, 158, 392, 419
BtsCI GGATG 2 cut(s) 33, 338
Cac8I GCNNGC 3 cut(s) 190, 228, 431
CaiI CAGNNNCTG 1 cut(s) 153
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 156, 417
CspAI ACCGGT 1 cut(s) 49
CviAII CATG 3 cut(s) 298, 356, 414
DpnI GATC 3 cut(s) 11, 23, 126
DpnII GATC 3 cut(s) 9, 21, 124
DraIII CACNNNGTG 1 cut(s) 426
Eam1104I CTCTTC 2 cut(s) 213, 497
EarI CTCTTC 2 cut(s) 213, 497
Eco24I GRGCYC 1 cut(s) 142
Eco57I CTGAAG 2 cut(s) 278, 364
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 2 cut(s) 141, 318
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 3 cut(s) 301, 359, 417
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 3 cut(s) 297, 355, 413
Fnu4HI GCNGC 2 cut(s) 224, 231
FokI GGATG 2 cut(s) 20, 325
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 224, 231
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 224, 231
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 4 cut(s) 146, 158, 392, 419
HapII CCGG 2 cut(s) 26, 50
HhaI GCGC 1 cut(s) 31
Hin1II CATG 3 cut(s) 301, 359, 417
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 3 cut(s) 59, 150, 505
HpaII CCGG 2 cut(s) 26, 50
HphI GGTGA 1 cut(s) 314
Hpy188I TCNGA 2 cut(s) 124, 258
HpyAV CCTTC 5 cut(s) 91, 232, 253, 263, 430
HpyCH4V TGCA 3 cut(s) 76, 226, 433
Hsp92II CATG 3 cut(s) 301, 359, 417
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 9, 21, 124
LguI GCTCTTC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 2 cut(s) 210, 242
LweI GCATC 1 cut(s) 175
MalI GATC 3 cut(s) 11, 23, 126
MboI GATC 3 cut(s) 9, 21, 124
MboII GAAGA 5 cut(s) 31, 208, 230, 511, 514
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 3 cut(s) 142, 194, 401
MluCI AATT 1 cut(s) 242
MlyI GAGTC 2 cut(s) 68, 514
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 5 cut(s) 82, 120, 130, 382, 417
MroXI GAANNNNTTC 1 cut(s) 242
MslI CAYNNNNRTG 2 cut(s) 71, 360
MspA1I CMGCKG 1 cut(s) 348
MspI CCGG 2 cut(s) 26, 50
MspR9I CCNGG 3 cut(s) 26, 143, 320
MvaI CCWGG 2 cut(s) 143, 320
NciI CCSGG 1 cut(s) 26
NdeII GATC 3 cut(s) 9, 21, 124
NlaIII CATG 3 cut(s) 301, 359, 417
NlaIV GGNNCC 2 cut(s) 108, 317
NmeAIII GCCGAG 1 cut(s) 418
PciSI GCTCTTC 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 318
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 2 cut(s) 225, 232
PleI GAGTC 2 cut(s) 67, 513
PpsI GAGTC 2 cut(s) 67, 513
Psp6I CCWGG 2 cut(s) 141, 318
PspGI CCWGG 2 cut(s) 141, 318
PspN4I GGNNCC 2 cut(s) 108, 317
PspPI GGNCC 2 cut(s) 156, 417
PstI CTGCAG 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 348
RseI CAYNNNNRTG 2 cut(s) 71, 360
SapI GCTCTTC 1 cut(s) 213
SatI GCNGC 2 cut(s) 224, 231
Sau3AI GATC 3 cut(s) 9, 21, 124
Sau96I GGNCC 2 cut(s) 156, 417
SchI GAGTC 2 cut(s) 68, 514
ScrFI CCNGG 3 cut(s) 26, 143, 320
SduI GDGCHC 3 cut(s) 142, 194, 401
SetI ASST 8 cut(s) 93, 225, 264, 279, 350, 408, 428, 477
SfaNI GCATC 1 cut(s) 175
SfcI CTRYAG 2 cut(s) 224, 343
SmiMI CAYNNNNRTG 2 cut(s) 71, 360
Sse9I AATT 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 24, 141, 318
TasI AATT 1 cut(s) 242
TfiI GAWTC 1 cut(s) 150
TseI GCWGC 2 cut(s) 223, 230
TspDTI ATGAA 6 cut(s) 17, 154, 235, 286, 344, 402
Van91I CCANNNNNTGG 1 cut(s) 153
XapI RAATTY 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.