Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Reverse (-)

21372078 .. 21372671

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAAACCCATCTTTTGTTGATTGTGCGACTAAGGTATGGACAACCAAAGGAGATGAACATGAAGCAGCAAAGAAGGGCTTCCTTGAATCCATTAAATTGCTAGTAGGAGAGCTTGGAGACAAGCCTTTCTTTGGGGGTGGGACCCTTGGATTCGTTGACGTCTCACTAGTGTCTTTCTATAGCTGGCTTTCCGGGTGTGAAAAGTTTGGCAACTTCAGTGTTGAGGAAGAGAGTCCAGACTTCATTGCTTGGGCGAAGAGGTGTTTGCAGAAGGAGAGCGTGTCCCGGTCTCTTCCTGACCAGGATAAGGTCTATGACTTTGTTGTGCAATTGAGGAAACTTAAAGGCTTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

119

Amino Acids

13.26

Weight (kDa)

5.23

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C_2	PF13410	20 - 88	1.2e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AcuI	CTGAAG	1 cut(s)	202
AcyI	GRCGYC	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	134, 310
AgsI	TTSAA	1 cut(s)	89
AhlI	ACTAGT	1 cut(s)	169
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	2 cut(s)	115, 186
AluI	AGCT	2 cut(s)	115, 186
Alw26I	GTCTC	3 cut(s)	114, 169, 297
ApeKI	GCWGC	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	2 cut(s)	196, 289
AvaII	GGWCC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	80
BccI	CCATC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	2 cut(s)	196, 289
BcoDI	GTCTC	3 cut(s)	114, 169, 297
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	2 cut(s)	104, 170
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
Bme1390I	CCNGG	3 cut(s)	196, 289, 305
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	2 cut(s)	145, 146
BmrFI	CCNGG	3 cut(s)	196, 289, 305
BpuMI	CCSGG	2 cut(s)	196, 289
BsaHI	GRCGYC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 310
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	134, 310
BseMI	GCAATG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	195, 289
BslFI	GGGAC	2 cut(s)	157, 271
BslI	CCNNNNNNNGG	2 cut(s)	134, 310
BsmAI	GTCTC	3 cut(s)	114, 169, 297
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	157, 271
Bso31I	GGTCTC	1 cut(s)	297
BspLI	GGNNCC	2 cut(s)	145, 146
BspTNI	GGTCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	305
Bst6I	CTCTTC	3 cut(s)	225, 254, 300
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	33
BstMAI	GTCTC	3 cut(s)	114, 169, 297
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	194, 287, 303
BstSFI	CTRYAG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	80
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	144
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	6 cut(s)	81, 115, 127, 186, 190, 351
CviKI_1	RGCY	6 cut(s)	81, 115, 127, 186, 190, 351
DdeI	CTNAG	1 cut(s)	33
Eam1104I	CTCTTC	3 cut(s)	225, 254, 300
EarI	CTCTTC	3 cut(s)	225, 254, 300
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	1 cut(s)	65
FaiI	YATR	4 cut(s)	40, 63, 183, 318
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 116, 148
FaqI	GGGAC	2 cut(s)	157, 271
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	104, 170
GluI	GCNGC	1 cut(s)	69
HapII	CCGG	2 cut(s)	195, 289
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	89, 153, 235
HpaII	CCGG	2 cut(s)	195, 289
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	239, 299
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	2 cut(s)	70, 268
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	271, 331
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	65
KflI	GGGWCCC	1 cut(s)	144
LpnPI	CCDG	7 cut(s)	172, 208, 252, 290, 302, 312, 317
Lsp1109I	GCAGC	1 cut(s)	80
MaeI	CTAG	2 cut(s)	104, 170
MaeII	ACGT	1 cut(s)	162
MboII	GAAGA	3 cut(s)	242, 271, 287
MfeI	CAATTG	1 cut(s)	332
MluCI	AATT	2 cut(s)	98, 332
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	220, 255, 330
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	2 cut(s)	96, 345
MspI	CCGG	2 cut(s)	195, 289
MspR9I	CCNGG	3 cut(s)	196, 289, 305
MunI	CAATTG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	305
NciI	CCSGG	2 cut(s)	196, 289
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	145, 146
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	89, 153
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	145, 146
PspPI	GGNCC	1 cut(s)	144
PspPPI	RGGWCCY	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	96, 345
SatI	GCNGC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	196, 289, 305
SetI	ASST	6 cut(s)	39, 117, 165, 188, 266, 315
SfcI	CTRYAG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	2 cut(s)	98, 332
SspMI	CTAG	2 cut(s)	104, 170
StyD4I	CCNGG	3 cut(s)	194, 287, 303
StyI	CCWWGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	165
TasI	AATT	2 cut(s)	98, 332
TfiI	GAWTC	2 cut(s)	89, 153
Tru1I	TTAA	2 cut(s)	96, 345
Tru9I	TTAA	2 cut(s)	96, 345
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	72, 78, 235
TspRI	CASTG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	2 cut(s)	104, 170
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.