Rorug03G0151900
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
12474450 .. 12477663
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0151900.1

Sequence Viewer

Length: 651 bp
ATGGCCACCATCGATACCCAGAAACCCACCGACACCACTCCCGCCGTCGAAAACCCTACCAAAGCCGTCGACCCCCCGGCCCCAGCCGCCGCGCCTAAACCAGATCTCCCCGTAGACCCTCCCACCGATACTCCCGCCCCTACAGCCCCACCCTCCGCCGTTGACTCAGCTGAAAACGAGTCCAAGGCGGACTCCGAGGACCCCAAGACCGCCGCGGCCGCAGAGGATGGCGCTGCTCCGGCTTCTGTTATTGAGAAGAAGATCCGCCGCGCCGAGCGCTTCGGTATATCTGTGCAGCTCACTGAAGAAGAGAAGCGCAATTCTCGTGCTGAAAGATTTGGTACTGTTTCTACATCGCATGGATCAGAAGCATCCAAAAAGTCTGAGGAGCTGAAGAGAAAGGCTAGGGCAGAGAGGTTTGGGATTGCTGCTCCACCTGTGGCAAGTGATGAGGATGCGAGGAAGAAAGCTCGACTGGCCCGATTTGCACCTGTTTCTAAGACTGCTAAACCTGACCCTCAGGAAGAAGAAAAAAGGAAGGCAAGGTCACTCAGGTTTTCAAATGGTTCTGCAGGTTCTCTCTCTCAAGTGAATGACAAGGGAAATATTGAGCAGGCAGCAATTGCAGGCGGTGCTGTAGGAAATGCATGA

Protein Analysis

216

Amino Acids

22.6

Weight (kDa)

6.67

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tho1_MOS11_C PF18592 84 - 114 6.2e-12 Tho1/MOS11 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 563
AccI GTMKAC 2 cut(s) 69, 114
AccII CGCG 3 cut(s) 92, 215, 270
AclWI GGATC 2 cut(s) 256, 370
AcoI YGGCCR 2 cut(s) 3, 216
AcuI CTGAAG 2 cut(s) 324, 413
AfaI GTAC 1 cut(s) 343
AfeI AGCGCT 1 cut(s) 278
AgsI TTSAA 1 cut(s) 561
AluBI AGCT 4 cut(s) 170, 298, 391, 470
AluI AGCT 4 cut(s) 170, 298, 391, 470
AlwI GGATC 2 cut(s) 256, 370
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 4 cut(s) 3, 78, 216, 477
ApeKI GCWGC 4 cut(s) 233, 295, 428, 617
AspLEI GCGC 5 cut(s) 94, 233, 272, 279, 318
AspS9I GGNCC 3 cut(s) 79, 199, 478
AsuC2I CCSGG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 199
AxyI CCTNAGG 1 cut(s) 519
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 324
BbvI GCAGC 4 cut(s) 220, 307, 415, 629
BccI CCATC 2 cut(s) 17, 221
BceAI ACGGC 3 cut(s) 29, 50, 143
BcnI CCSGG 1 cut(s) 77
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 3 cut(s) 141, 570, 636
BfoI RGCGCY 2 cut(s) 234, 280
BfuAI ACCTGC 1 cut(s) 563
BglII AGATCT 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 79, 199, 478
BmiI GGNNCC 2 cut(s) 81, 201
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 2 cut(s) 380, 445
BpuEI CTTGAG 1 cut(s) 570
BpuMI CCSGG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 12
BsaJI CCNNGG 4 cut(s) 75, 183, 195, 213
BsaXI ACNNNNNCTCC 4 cut(s) 90, 115, 120, 145
Bse1I ACTGG 1 cut(s) 480
Bse21I CCTNAGG 1 cut(s) 519
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 4 cut(s) 75, 183, 195, 213
BseGI GGATG 3 cut(s) 232, 371, 460
BseMII CTCAG 4 cut(s) 180, 375, 533, 565
BseNI ACTGG 1 cut(s) 480
BseRI GAGGAG 1 cut(s) 401
BseX3I CGGCCG 1 cut(s) 216
BseXI GCAGC 4 cut(s) 220, 307, 415, 629
BseYI CCCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 314
Bsh1236I CGCG 3 cut(s) 92, 215, 270
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 4 cut(s) 5, 80, 218, 479
BshVI ATCGAT 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 77, 239
BsnI GGCC 4 cut(s) 5, 80, 218, 479
Bsp143I GATC 3 cut(s) 103, 261, 362
BspANI GGCC 4 cut(s) 5, 80, 218, 479
BspCNI CTCAG 4 cut(s) 179, 376, 532, 564
BspDI ATCGAT 1 cut(s) 12
BspFNI CGCG 3 cut(s) 92, 215, 270
BspLI GGNNCC 2 cut(s) 81, 201
BspMAI CTGCAG 1 cut(s) 574
BspMI ACCTGC 1 cut(s) 563
BspPI GGATC 2 cut(s) 256, 370
BsrI ACTGG 1 cut(s) 480
BssECI CCNNGG 4 cut(s) 75, 183, 195, 213
BssMI GATC 3 cut(s) 103, 261, 362
BssSI CACGAG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 303, 389
BstAPI GCANNNNNTGC 2 cut(s) 623, 632
BstC8I GCNNGC 2 cut(s) 615, 628
BstDEI CTNAG 5 cut(s) 166, 384, 498, 519, 551
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 3 cut(s) 232, 371, 460
BstFNI CGCG 3 cut(s) 92, 215, 270
BstH2I RGCGCY 2 cut(s) 234, 280
BstHHI GCGC 5 cut(s) 94, 233, 272, 279, 318
BstKTI GATC 3 cut(s) 106, 264, 365
BstMBI GATC 3 cut(s) 103, 261, 362
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 9 cut(s) 86, 143, 218, 239, 276, 476, 485, 623, 632
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 3 cut(s) 141, 570, 636
BstUI CGCG 3 cut(s) 92, 215, 270
BstV1I GCAGC 4 cut(s) 220, 307, 415, 629
BstX2I RGATCY 2 cut(s) 103, 261
BstYI RGATCY 2 cut(s) 103, 261
BstZI CGGCCG 1 cut(s) 216
Bsu15I ATCGAT 1 cut(s) 12
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 4 cut(s) 5, 80, 218, 479
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 213
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 3 cut(s) 232, 371, 460
BtsIMutI CAGTG 1 cut(s) 300
BveI ACCTGC 1 cut(s) 563
Cac8I GCNNGC 2 cut(s) 615, 628
CciNI GCGGCCGC 1 cut(s) 216
CfoI GCGC 5 cut(s) 94, 233, 272, 279, 318
Cfr13I GGNCC 3 cut(s) 79, 199, 478
Cfr42I CCGCGG 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 359, 648
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 5 cut(s) 166, 384, 498, 519, 551
DpnI GATC 3 cut(s) 105, 263, 364
DpnII GATC 3 cut(s) 103, 261, 362
EaeI YGGCCR 2 cut(s) 3, 216
EagI CGGCCG 1 cut(s) 216
Eam1104I CTCTTC 2 cut(s) 303, 389
EarI CTCTTC 2 cut(s) 303, 389
EciI GGCGGA 3 cut(s) 145, 203, 254
EclXI CGGCCG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 199
Eco47III AGCGCT 1 cut(s) 278
Eco52I CGGCCG 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 324, 413
Eco81I CCTNAGG 1 cut(s) 519
EcoO109I RGGNCCY 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 362, 651
FaiI YATR 3 cut(s) 287, 360, 649
FatI CATG 2 cut(s) 358, 647
FauI CCCGC 2 cut(s) 49, 142
FblI GTMKAC 2 cut(s) 69, 114
FokI GGATG 3 cut(s) 239, 358, 467
FspBI CTAG 1 cut(s) 405
GlaI GCGC 5 cut(s) 93, 232, 271, 278, 317
GsaI CCCAGC 1 cut(s) 86
HaeII RGCGCY 2 cut(s) 234, 280
HaeIII GGCC 4 cut(s) 5, 80, 218, 479
HapII CCGG 2 cut(s) 77, 239
HhaI GCGC 5 cut(s) 94, 233, 272, 279, 318
Hin1II CATG 2 cut(s) 362, 651
Hin6I GCGC 5 cut(s) 92, 231, 270, 277, 316
HinP1I GCGC 5 cut(s) 92, 231, 270, 277, 316
HincII GTYRAC 2 cut(s) 70, 163
HindII GTYRAC 2 cut(s) 70, 163
HinfI GANTC 3 cut(s) 164, 179, 191
HpaII CCGG 2 cut(s) 77, 239
Hpy166II GTNNAC 3 cut(s) 70, 115, 163
Hpy188I TCNGA 3 cut(s) 196, 367, 385
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 3 cut(s) 70, 115, 163
Hpy99I CGWCG 2 cut(s) 50, 71
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4V TGCA 5 cut(s) 295, 488, 572, 626, 647
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 143, 218, 239, 276, 476, 485, 623, 632
HpyF3I CTNAG 5 cut(s) 166, 384, 498, 519, 551
Hsp92II CATG 2 cut(s) 362, 651
HspAI GCGC 5 cut(s) 92, 231, 270, 277, 316
KspI CCGCGG 1 cut(s) 216
Kzo9I GATC 3 cut(s) 103, 261, 362
LmnI GCTCC 3 cut(s) 241, 388, 436
Lsp1109I GCAGC 4 cut(s) 220, 307, 415, 629
LweI GCATC 2 cut(s) 380, 445
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 546
MalI GATC 3 cut(s) 105, 263, 364
MboI GATC 3 cut(s) 103, 261, 362
MboII GAAGA 8 cut(s) 268, 271, 317, 320, 406, 475, 536, 539
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 2 cut(s) 103, 261
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 319, 621
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 158, 185, 188
MnlI CCTC 9 cut(s) 129, 163, 190, 217, 379, 408, 445, 453, 528
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 649
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 170, 215
MspI CCGG 2 cut(s) 77, 239
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 621
MvnI CGCG 3 cut(s) 92, 215, 270
MwoI GCNNNNNNNGC 9 cut(s) 86, 143, 218, 239, 276, 476, 485, 623, 632
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 103, 261, 362
NlaIII CATG 2 cut(s) 362, 651
NlaIV GGNNCC 2 cut(s) 81, 201
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 546
NotI GCGGCCGC 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 649
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PleI GAGTC 3 cut(s) 158, 185, 187
PpsI GAGTC 3 cut(s) 158, 185, 187
PpuMI RGGWCCY 1 cut(s) 199
Psp5II RGGWCCY 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 81, 201
PspPI GGNCC 3 cut(s) 79, 199, 478
PspPPI RGGWCCY 1 cut(s) 199
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 2 cut(s) 103, 261
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SacII CCGCGG 1 cut(s) 216
SalI GTCGAC 1 cut(s) 68
Sau3AI GATC 3 cut(s) 103, 261, 362
Sau96I GGNCC 3 cut(s) 79, 199, 478
SchI GAGTC 3 cut(s) 158, 185, 188
ScrFI CCNGG 1 cut(s) 77
SfaNI GCATC 2 cut(s) 380, 445
SfcI CTRYAG 3 cut(s) 141, 570, 636
Sfr303I CCGCGG 1 cut(s) 216
SgrBI CCGCGG 1 cut(s) 216
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 585
SmoI CTYRAG 1 cut(s) 585
Sse9I AATT 2 cut(s) 319, 621
SspI AATATT 1 cut(s) 607
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 346
TaqI TCGA 4 cut(s) 12, 48, 69, 472
TasI AATT 2 cut(s) 319, 621
TauI GCSGC 6 cut(s) 89, 92, 215, 218, 221, 270
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 546
TseI GCWGC 4 cut(s) 233, 295, 428, 617
Tsp45I GTSAC 1 cut(s) 546
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 199
XmiI GTMKAC 2 cut(s) 69, 114
XspI CTAG 1 cut(s) 405
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.