Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000304

Physical Location & Seq

Genomic Coordinates Forward (+)

34266096 .. 34266284

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1211400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGCCATTTTATAGCTGGTTTTCTATCTATGAGAAATTTGGAAACTTCAGTGTAGAGATAGATCACCCAAAGTTTATTGCCTGGGTTAAAAGGTGTTTGGAGAAGAAGAGTGTATCCAAGTCGCTTGCCAACCCAAAAAAGGTCTACGATTTCCTCTTGCAAATGTGGAACAAACTCGAAATGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_C_2 GST_N GST_N_3

Protein Analysis

63

Amino Acids

7.55

Weight (kDa)

9.13

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0000304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca	FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica	MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica	Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis	pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis	RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata	RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora	Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii	Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa	Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha	Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana	Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	31
AfiI	CCNNNNNNNGG	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	1 cut(s)	15
AluI	AGCT	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	82
BciVI	GTATCC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	126
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	126
CviJI	RGCY	1 cut(s)	15
CviKI_1	RGCY	1 cut(s)	15
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	80
FaiI	YATR	2 cut(s)	12, 30
FblI	GTMKAC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	2 cut(s)	67, 94
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	115, 118
MluCI	AATT	1 cut(s)	35
MnlI	CCTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	3 cut(s)	17, 95, 144
SgeI	CNNG	6 cut(s)	28, 93, 94, 130, 137, 169
Sse9I	AATT	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	80
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	55
TspRI	CASTG	1 cut(s)	55
XapI	RAATTY	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.