Rh5AG192700

Glutathione S-transferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
22298145 .. 22300078
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG192700.1

Sequence Viewer

Length: 351 bp
ATGCAGATATATGATCTAGGGAGAAAGACATGGACAAGTAAAGGAGATGACCAGGAGGCAGCTAAGAAGGAATTCATTGACTGCGTTAAGTTGCTAGAAGTTGAGCTTGGGGACAAGCCTTTCTTTGGTGGTGAGACCCTCGGATTTGTGGACGTGGCACTTGTTCCTTTCTATTCATGGTTCTCTGTGTATGAGAAATTCGGCAACTTCAGTATTGAACCAGAGTGCCCGAAGTTCATTGCTTGGGTTAAGAGGTGTTTGGAGAAGGAGAGTGTGTCAAAGTCTGTTCCTGACCAGGACAAGGTCTGTGACTTTGTTGTGGAGATGAGGAAGAAGCTTGGAATTGAGTAG

Protein Analysis

116

Amino Acids

13.36

Weight (kDa)

4.99

Isoelectric Point (pI)

31.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_C PF00043 17 - 89 1.1e-06 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 19 - 85 3.4e-10 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17170 AT1G17180 AT1G78340 AT1G78370 AT1G78380
fragaria_vesca FvH4_3g16210 FvH4_3g16230 FvH4_3g16240 FvH4_3g16240 FvH4_3g16250 FvH4_3g16290 FvH4_4g11790
malus_domestica MD04G1033800.v1.1 MD05G1209700.v1.1 MD05G1210000.v1.1 MD05G1210100.v1.1 MD05G1210200.v1.1 MD05G1210400.v1.1 MD05G1210600.v1.1 MD05G1210700.v1.1 MD05G1211000.v1.1 MD05G1211400.v1.1 MD10G1196300.v1.1 MD10G1196600.v1.1 MD10G1196900.v1.1 MD10G1197100.v1.1
prunus_persica Prupe.1G180800_v2.0.a1 Prupe.4G145800_v2.0.a1 Prupe.4G145900_v2.0.a1 Prupe.4G146000_v2.0.a1 Prupe.4G146100_v2.0.a1 Prupe.4G146200_v2.0.a1 Prupe.4G146400_v2.0.a1 Prupe.4G146500_v2.0.a1 Prupe.4G146800_v2.0.a1 Prupe.4G147000_v2.0.a1 Prupe.4G147200_v2.0.a1 Prupe.4G147400_v2.0.a1 Prupe.4G147800_v2.0.a1
pyrus_communis pycom05g19570 pycom05g19590 pycom05g19600 pycom05g19620 pycom05g19630 pycom10g16980
rosa_chinensis RchiOBHm_Chr5g0026581 RchiOBHm_Chr5g0027291 RchiOBHm_Chr5g0027311 RchiOBHm_Chr5g0027331 RchiOBHm_Chr5g0027341 RchiOBHm_Chr5g0027351 RchiOBHm_Chr5g0027361 RchiOBHm_Chr5g0027381 RchiOBHm_Chr5g0027391
rosa_laevigata RLG00000023802 RLG00000032937 RLG00000033008 RLG00000033009 RLG00000033010 RLG00000033011 RLG00000033012 RLG00000033014 RLG00000033015
rosa_multiflora Rmu_sc0001348.1_g000012 Rmu_sc0001348.1_g000018 Rmu_sc0001526.1_g000022 Rmu_sc0003500.1_g000007 Rmu_sc0003500.1_g000014 Rmu_sc0003500.1_g000018 Rmu_sc0003500.1_g000022 Rmu_sc0003500.1_g000023 Rmu_sc0003500.1_g000027 Rmu_sc0003500.1_g000035 Rmu_sc0004371.1_g000001 Rmu_sc0006854.1_g000010 Rmu_sc0006854.1_g000013 Rmu_sc0007802.1_g000003 Rmu_sc0007802.1_g000006 Rmu_sc0007802.1_g000008 Rmu_sc0007802.1_g000011 Rmu_sc0007802.1_g000012 Rmu_sc0041677.1_g000002 Rmu_ssc0000372.1_g000062
rosa_roxburghii Rroxscaffold_1G00052130 Rroxscaffold_1G00052140 Rroxscaffold_1G00052160 Rroxscaffold_1G00052170 Rroxscaffold_1G00052180 Rroxscaffold_1G00052200 Rroxscaffold_1G00052900 Rroxscaffold_4G00329120 Rroxscaffold_4G00329130 Rroxscaffold_6G00405750
rosa_rugosa Rorug01G0093600 Rorug03G0151900 Rorug05G0098200 Rorug05G0098300 Rorug05G0098400 Rorug05G0098500
rosa_samantha Rh3AG202100 Rh5AG187300 Rh5AG192300 Rh5AG192500 Rh5AG192600 Rh5AG192700 Rh5BG190100 Rh5BG190200 Rh5CG203800 Rh5CG210500 Rh5CG210600 Rh5CG210700 Rh5CG210800
rosa_wichuraiana Rw5G016960 Rw5G017500 Rw5G017510 Rw5G017520 Rw5G017530 Rw5G017540 Rw5G017550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 71, 197
AcuI CTGAAG 1 cut(s) 193
AfiI CCNNNNNNNGG 2 cut(s) 125, 301
AgsI TTSAA 1 cut(s) 218
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 2 cut(s) 51, 294
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 3 cut(s) 62, 106, 337
AluI AGCT 3 cut(s) 62, 106, 337
Alw26I GTCTC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 71, 197
Asp700I GAANNNNTTC 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 230
BbvI GCAGC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 53, 296
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 2 cut(s) 17, 95
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 53, 296
BmgBI CACGTC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 53, 296
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 301
Bse3DI GCAATG 1 cut(s) 237
BseBI CCWGG 2 cut(s) 53, 296
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 125, 301
BseMI GCAATG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 71
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 125, 301
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 13
Bst2UI CCWGG 2 cut(s) 53, 296
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 13
BstNI CCWGG 2 cut(s) 53, 296
BstSCI CCNGG 2 cut(s) 51, 294
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 71
BtrI CACGTC 1 cut(s) 154
CviAII CATG 2 cut(s) 30, 177
CviJI RGCY 4 cut(s) 62, 106, 118, 337
CviKI_1 RGCY 4 cut(s) 62, 106, 118, 337
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 15
DpnII GATC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 128
Eco57I CTGAAG 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 51, 294
FaeI CATG 2 cut(s) 33, 180
FaiI YATR 5 cut(s) 10, 12, 31, 178, 192
FalI AAGNNNNNCTT 4 cut(s) 90, 122, 107, 139
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 29, 176
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 17, 95
GluI GCNGC 1 cut(s) 60
Hin1II CATG 2 cut(s) 33, 180
HindIII AAGCTT 1 cut(s) 335
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 61, 259
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 33, 180
Kzo9I GATC 1 cut(s) 13
LpnPI CCDG 6 cut(s) 38, 65, 234, 281, 303, 308
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 2 cut(s) 17, 95
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 15
MboI GATC 1 cut(s) 13
MboII GAAGA 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 3 cut(s) 71, 197, 342
MnlI CCTC 4 cut(s) 49, 149, 246, 321
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 2 cut(s) 87, 249
MspR9I CCNGG 2 cut(s) 53, 296
MvaI CCWGG 2 cut(s) 53, 296
NdeII GATC 1 cut(s) 13
NlaIII CATG 2 cut(s) 33, 180
NmuCI GTSAC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 71
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 51, 294
PspGI CCWGG 2 cut(s) 51, 294
PsyI GACNNNGTC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 87, 249
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 53, 296
SduI GDGCHC 1 cut(s) 230
SetI ASST 6 cut(s) 64, 108, 156, 257, 306, 339
Sse9I AATT 3 cut(s) 71, 197, 342
SspMI CTAG 2 cut(s) 17, 95
StyD4I CCNGG 2 cut(s) 51, 294
TaiI ACGT 1 cut(s) 156
TasI AATT 3 cut(s) 71, 197, 342
Tru1I TTAA 2 cut(s) 87, 249
Tru9I TTAA 2 cut(s) 87, 249
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 3 cut(s) 64, 165, 226
Tth111I GACNNNGTC 1 cut(s) 302
XapI RAATTY 2 cut(s) 71, 197
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 17, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.