RuBisCO catalyzes two reactions the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TmcA_N | PF08351 | 1 - 200 | 1.8e-19 | tRNA(Met) cytidine acetyltransferase TmcA, N-terminal |
| NAT10_TcmA_helicase | PF05127 | 281 - 475 | 2.2e-56 | RNA cytidine acetyltransferase NAT10/TcmA, helicase domain |
| GNAT_acetyltr_2 | PF13718 | 515 - 743 | 4.9e-95 | GNAT acetyltransferase 2 |
| tRNA_bind_2 | PF13725 | 753 - 977 | 5.3e-64 | Possible tRNA binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1002, 2663 |
| AarI | CACCTGC | 1 cut(s) | 211 |
| Acc36I | ACCTGC | 2 cut(s) | 211, 1468 |
| AccB1I | GGYRCC | 1 cut(s) | 1966 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2053, 2320, 2960 |
| AccBSI | CCGCTC | 1 cut(s) | 66 |
| AccI | GTMKAC | 5 cut(s) | 15, 361, 1333, 2414, 2944 |
| AciI | CCGC | 5 cut(s) | 64, 297, 429, 1407, 2449 |
| AclWI | GGATC | 8 cut(s) | 248, 263, 714, 2345, 2505, 2790, 2817, 2820 |
| AcoI | YGGCCR | 2 cut(s) | 538, 856 |
| AcsI | RAATTY | 4 cut(s) | 333, 968, 1579, 2150 |
| AcuI | CTGAAG | 2 cut(s) | 350, 693 |
| AcvI | CACGTG | 1 cut(s) | 98 |
| AcyI | GRCGYC | 3 cut(s) | 48, 729, 1967 |
| AfaI | GTAC | 5 cut(s) | 317, 766, 832, 1252, 2696 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1213, 1328, 2053, 2119, 2320, 2960 |
| AflIII | ACRYGT | 1 cut(s) | 2204 |
| AjiI | CACGTC | 1 cut(s) | 3044 |
| AjnI | CCWGG | 4 cut(s) | 528, 774, 1397, 1701 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1386, 1418, 2348, 2380 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2026, 2058 |
| Alw21I | GWGCWC | 2 cut(s) | 192, 1834 |
| Alw26I | GTCTC | 3 cut(s) | 407, 1272, 2107 |
| AlwI | GGATC | 8 cut(s) | 248, 263, 714, 2345, 2505, 2790, 2817, 2820 |
| Ama87I | CYCGRG | 2 cut(s) | 257, 2876 |
| AoxI | GGCC | 8 cut(s) | 378, 538, 742, 856, 1204, 1318, 2110, 2587 |
| ApeKI | GCWGC | 8 cut(s) | 848, 872, 905, 1084, 1166, 1169, 1991, 2795 |
| ApoI | RAATTY | 4 cut(s) | 333, 968, 1579, 2150 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2757, 2789 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2512, 2538 |
| AspLEI | GCGC | 4 cut(s) | 24, 1555, 1621, 1969 |
| AspS9I | GGNCC | 6 cut(s) | 743, 1205, 1319, 1643, 2122, 2212 |
| AsuHPI | GGTGA | 7 cut(s) | 235, 460, 1201, 1394, 1708, 1778, 2207 |
| AsuII | TTCGAA | 4 cut(s) | 511, 966, 1843, 2506 |
| AvaI | CYCGRG | 2 cut(s) | 257, 2876 |
| AvaII | GGWCC | 3 cut(s) | 1643, 2122, 2212 |
| BanI | GGYRCC | 1 cut(s) | 1966 |
| BanII | GRGCYC | 2 cut(s) | 192, 944 |
| BauI | CACGAG | 1 cut(s) | 852 |
| BbrPI | CACGTG | 1 cut(s) | 98 |
| BbsI | GAAGAC | 2 cut(s) | 962, 1210 |
| Bbv12I | GWGCWC | 2 cut(s) | 192, 1834 |
| BbvI | GCAGC | 8 cut(s) | 835, 859, 892, 1096, 1153, 1156, 1978, 2782 |
| BccI | CCATC | 6 cut(s) | 1543, 1742, 1863, 2314, 2478, 2954 |
| BceAI | ACGGC | 3 cut(s) | 365, 525, 843 |
| BciT130I | CCWGG | 4 cut(s) | 530, 776, 1399, 1703 |
| BclI | TGATCA | 1 cut(s) | 1768 |
| BcoDI | GTCTC | 3 cut(s) | 407, 1272, 2107 |
| BfaI | CTAG | 5 cut(s) | 156, 398, 2270, 2375, 3103 |
| BfmI | CTRYAG | 5 cut(s) | 906, 1230, 1280, 2326, 2933 |
| BfoI | RGCGCY | 2 cut(s) | 1556, 1970 |
| BfuAI | ACCTGC | 2 cut(s) | 211, 1468 |
| BglII | AGATCT | 3 cut(s) | 2038, 2518, 2679 |
| BisI | GCNGC | 9 cut(s) | 849, 873, 906, 1085, 1167, 1170, 1992, 2450, 2796 |
| BlpI | GCTNAGC | 3 cut(s) | 128, 191, 216 |
| BlsI | GCNGC | 9 cut(s) | 850, 874, 907, 1086, 1168, 1171, 1993, 2451, 2797 |
| BmcAI | AGTACT | 1 cut(s) | 832 |
| Bme1390I | CCNGG | 4 cut(s) | 530, 776, 1399, 1703 |
| Bme18I | GGWCC | 3 cut(s) | 1643, 2122, 2212 |
| BmeT110I | CYCGRG | 2 cut(s) | 257, 2876 |
| BmgBI | CACGTC | 1 cut(s) | 3044 |
| BmgT120I | GGNCC | 6 cut(s) | 743, 1205, 1319, 1643, 2122, 2212 |
| BmiI | GGNNCC | 3 cut(s) | 1968, 2757, 3064 |
| BmrFI | CCNGG | 4 cut(s) | 530, 776, 1399, 1703 |
| BpiI | GAAGAC | 2 cut(s) | 962, 1210 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3047, 3079 |
| BpmI | CTGGAG | 4 cut(s) | 633, 915, 1599, 1724 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1443 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 128, 191, 216 |
| Bpu14I | TTCGAA | 4 cut(s) | 511, 966, 1843, 2506 |
| BpuEI | CTTGAG | 3 cut(s) | 206, 2033, 2547 |
| BsaAI | YACGTR | 1 cut(s) | 98 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1752, 2781, 2827 |
| BsaHI | GRCGYC | 3 cut(s) | 48, 729, 1967 |
| BsaJI | CCNNGG | 7 cut(s) | 483, 528, 775, 859, 1778, 2118, 2954 |
| BsaWI | WCCGGW | 1 cut(s) | 2542 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1213, 1328, 2053, 2119, 2320, 2960 |
| Bse1I | ACTGG | 5 cut(s) | 541, 650, 656, 1184, 1258 |
| Bse3DI | GCAATG | 3 cut(s) | 49, 139, 2006 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1752, 2781, 2827 |
| BseBI | CCWGG | 4 cut(s) | 530, 776, 1399, 1703 |
| BseDI | CCNNGG | 7 cut(s) | 483, 528, 775, 859, 1778, 2118, 2954 |
| BseGI | GGATG | 6 cut(s) | 360, 499, 604, 994, 1855, 2965 |
| BseJI | GATNNNNATC | 3 cut(s) | 1752, 2781, 2827 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1213, 1328, 2053, 2119, 2320, 2960 |
| BseMI | GCAATG | 3 cut(s) | 49, 139, 2006 |
| BseMII | CTCAG | 5 cut(s) | 142, 205, 318, 936, 2305 |
| BseNI | ACTGG | 5 cut(s) | 541, 650, 656, 1184, 1258 |
| BseRI | GAGGAG | 1 cut(s) | 3014 |
| BseXI | GCAGC | 8 cut(s) | 835, 859, 892, 1096, 1153, 1156, 1978, 2782 |
| BsgI | GTGCAG | 3 cut(s) | 858, 918, 1446 |
| BshFI | GGCC | 8 cut(s) | 380, 540, 744, 858, 1206, 1320, 2112, 2589 |
| BshNI | GGYRCC | 1 cut(s) | 1966 |
| BsiHKAI | GWGCWC | 2 cut(s) | 192, 1834 |
| BsiHKCI | CYCGRG | 2 cut(s) | 257, 2876 |
| BsiSI | CCGG | 1 cut(s) | 2543 |
| BslFI | GGGAC | 1 cut(s) | 1722 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1213, 1328, 2053, 2119, 2320, 2960 |
| BsmAI | GTCTC | 3 cut(s) | 407, 1272, 2107 |
| BsmFI | GGGAC | 1 cut(s) | 1722 |
| BsnI | GGCC | 8 cut(s) | 380, 540, 744, 858, 1206, 1320, 2112, 2589 |
| BsoBI | CYCGRG | 2 cut(s) | 257, 2876 |
| Bsp119I | TTCGAA | 4 cut(s) | 511, 966, 1843, 2506 |
| Bsp1286I | GDGCHC | 3 cut(s) | 192, 944, 1834 |
| Bsp1407I | TGTACA | 1 cut(s) | 315 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 128, 191, 216 |
| Bsp19I | CCATGG | 2 cut(s) | 483, 1778 |
| BspACI | CCGC | 5 cut(s) | 64, 297, 429, 1407, 2449 |
| BspANI | GGCC | 8 cut(s) | 380, 540, 744, 858, 1206, 1320, 2112, 2589 |
| BspCNI | CTCAG | 5 cut(s) | 141, 204, 319, 937, 2304 |
| BspHI | TCATGA | 1 cut(s) | 2625 |
| BspLI | GGNNCC | 3 cut(s) | 1968, 2757, 3064 |
| BspMAI | CTGCAG | 2 cut(s) | 910, 2937 |
| BspMI | ACCTGC | 2 cut(s) | 211, 1468 |
| BspPI | GGATC | 8 cut(s) | 248, 263, 714, 2345, 2505, 2790, 2817, 2820 |
| BspQI | GCTCTTC | 1 cut(s) | 1287 |
| BspT104I | TTCGAA | 4 cut(s) | 511, 966, 1843, 2506 |
| BspT107I | GGYRCC | 1 cut(s) | 1966 |
| BsrBI | CCGCTC | 1 cut(s) | 66 |
| BsrDI | GCAATG | 3 cut(s) | 49, 139, 2006 |
| BsrGI | TGTACA | 1 cut(s) | 315 |
| BsrI | ACTGG | 5 cut(s) | 541, 650, 656, 1184, 1258 |
| BssECI | CCNNGG | 7 cut(s) | 483, 528, 775, 859, 1778, 2118, 2954 |
| BssNAI | GTATAC | 1 cut(s) | 362 |
| BssNI | GRCGYC | 3 cut(s) | 48, 729, 1967 |
| BssSI | CACGAG | 1 cut(s) | 852 |
| BssT1I | CCWWGG | 4 cut(s) | 483, 1778, 2118, 2954 |
| Bst1107I | GTATAC | 1 cut(s) | 362 |
| Bst2BI | CACGAG | 1 cut(s) | 852 |
| Bst2UI | CCWGG | 4 cut(s) | 530, 776, 1399, 1703 |
| Bst4CI | ACNGT | 8 cut(s) | 418, 835, 1234, 1496, 1810, 1926, 2231, 2658 |
| Bst6I | CTCTTC | 2 cut(s) | 1287, 3080 |
| BstACI | GRCGYC | 3 cut(s) | 48, 729, 1967 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2921 |
| BstAUI | TGTACA | 1 cut(s) | 315 |
| BstBAI | YACGTR | 1 cut(s) | 98 |
| BstBI | TTCGAA | 4 cut(s) | 511, 966, 1843, 2506 |
| BstC8I | GCNNGC | 4 cut(s) | 846, 1971, 2334, 2591 |
| BstDSI | CCRYGG | 3 cut(s) | 483, 859, 1778 |
| BstEII | GGTNACC | 2 cut(s) | 1382, 1455 |
| BstF5I | GGATG | 6 cut(s) | 360, 499, 604, 994, 1855, 2965 |
| BstH2I | RGCGCY | 2 cut(s) | 1556, 1970 |
| BstHHI | GCGC | 4 cut(s) | 24, 1555, 1621, 1969 |
| BstMAI | GTCTC | 3 cut(s) | 407, 1272, 2107 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 845, 905, 1120, 1282, 2921 |
| BstNI | CCWGG | 4 cut(s) | 530, 776, 1399, 1703 |
| BstNSI | RCATGY | 2 cut(s) | 588, 2208 |
| BstPI | GGTNACC | 2 cut(s) | 1382, 1455 |
| BstSCI | CCNGG | 4 cut(s) | 528, 774, 1397, 1701 |
| BstSFI | CTRYAG | 5 cut(s) | 906, 1230, 1280, 2326, 2933 |
| BstV1I | GCAGC | 8 cut(s) | 835, 859, 892, 1096, 1153, 1156, 1978, 2782 |
| BstV2I | GAAGAC | 2 cut(s) | 962, 1210 |
| BstX2I | RGATCY | 8 cut(s) | 706, 2038, 2350, 2497, 2518, 2679, 2782, 2822 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 490, 536, 2096 |
| BstYI | RGATCY | 8 cut(s) | 706, 2038, 2350, 2497, 2518, 2679, 2782, 2822 |
| BstZ17I | GTATAC | 1 cut(s) | 362 |
| BsuRI | GGCC | 8 cut(s) | 380, 540, 744, 858, 1206, 1320, 2112, 2589 |
| BtgI | CCRYGG | 3 cut(s) | 483, 859, 1778 |
| BtrI | CACGTC | 1 cut(s) | 3044 |
| BtsCI | GGATG | 6 cut(s) | 360, 499, 604, 994, 1855, 2965 |
| BtsI | GCAGTG | 1 cut(s) | 1178 |
| BtsIMutI | CAGTG | 5 cut(s) | 1178, 1191, 1984, 2236, 2654 |
| BveI | ACCTGC | 2 cut(s) | 211, 1468 |
| Cac8I | GCNNGC | 4 cut(s) | 846, 1971, 2334, 2591 |
| CciI | TCATGA | 1 cut(s) | 2625 |
| CfoI | GCGC | 4 cut(s) | 24, 1555, 1621, 1969 |
| Cfr13I | GGNCC | 6 cut(s) | 743, 1205, 1319, 1643, 2122, 2212 |
| CseI | GACGC | 3 cut(s) | 37, 737, 2694 |
| Csp6I | GTAC | 5 cut(s) | 316, 765, 831, 1251, 2695 |
| CviQI | GTAC | 5 cut(s) | 316, 765, 831, 1251, 2695 |
| DinI | GGCGCC | 1 cut(s) | 1968 |
| EaeI | YGGCCR | 2 cut(s) | 538, 856 |
| Eam1104I | CTCTTC | 2 cut(s) | 1287, 3080 |
| EarI | CTCTTC | 2 cut(s) | 1287, 3080 |
| EciI | GGCGGA | 1 cut(s) | 444 |
| Ecl136II | GAGCTC | 1 cut(s) | 190 |
| Eco130I | CCWWGG | 4 cut(s) | 483, 1778, 2118, 2954 |
| Eco24I | GRGCYC | 2 cut(s) | 192, 944 |
| Eco32I | GATATC | 2 cut(s) | 681, 2605 |
| Eco47I | GGWCC | 3 cut(s) | 1643, 2122, 2212 |
| Eco53kI | GAGCTC | 1 cut(s) | 190 |
| Eco57I | CTGAAG | 2 cut(s) | 350, 693 |
| Eco72I | CACGTG | 1 cut(s) | 98 |
| Eco88I | CYCGRG | 2 cut(s) | 257, 2876 |
| Eco91I | GGTNACC | 2 cut(s) | 1382, 1455 |
| EcoICRI | GAGCTC | 1 cut(s) | 190 |
| EcoO65I | GGTNACC | 2 cut(s) | 1382, 1455 |
| EcoRI | GAATTC | 2 cut(s) | 333, 1579 |
| EcoRII | CCWGG | 4 cut(s) | 528, 774, 1397, 1701 |
| EcoRV | GATATC | 2 cut(s) | 681, 2605 |
| EcoT14I | CCWWGG | 4 cut(s) | 483, 1778, 2118, 2954 |
| EcoT22I | ATGCAT | 2 cut(s) | 994, 2263 |
| EcoT38I | GRGCYC | 2 cut(s) | 192, 944 |
| EgeI | GGCGCC | 1 cut(s) | 1968 |
| EheI | GGCGCC | 1 cut(s) | 1968 |
| ErhI | CCWWGG | 4 cut(s) | 483, 1778, 2118, 2954 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2523, 2555, 2733, 2765 |
| FaqI | GGGAC | 1 cut(s) | 1722 |
| FauNDI | CATATG | 2 cut(s) | 2487, 2557 |
| FbaI | TGATCA | 1 cut(s) | 1768 |
| FblI | GTMKAC | 5 cut(s) | 15, 361, 1333, 2414, 2944 |
| Fnu4HI | GCNGC | 9 cut(s) | 849, 873, 906, 1085, 1167, 1170, 1992, 2450, 2796 |
| FokI | GGATG | 6 cut(s) | 367, 506, 611, 1001, 1842, 2972 |
| FriOI | GRGCYC | 2 cut(s) | 192, 944 |
| Fsp4HI | GCNGC | 9 cut(s) | 849, 873, 906, 1085, 1167, 1170, 1992, 2450, 2796 |
| FspBI | CTAG | 5 cut(s) | 156, 398, 2270, 2375, 3103 |
| GlaI | GCGC | 4 cut(s) | 23, 1554, 1620, 1968 |
| GluI | GCNGC | 9 cut(s) | 849, 873, 906, 1085, 1167, 1170, 1992, 2450, 2796 |
| GsuI | CTGGAG | 4 cut(s) | 633, 915, 1599, 1724 |
| HaeII | RGCGCY | 2 cut(s) | 1556, 1970 |
| HaeIII | GGCC | 8 cut(s) | 380, 540, 744, 858, 1206, 1320, 2112, 2589 |
| HapII | CCGG | 1 cut(s) | 2543 |
| HgaI | GACGC | 3 cut(s) | 37, 737, 2694 |
| HhaI | GCGC | 4 cut(s) | 24, 1555, 1621, 1969 |
| Hin1I | GRCGYC | 3 cut(s) | 48, 729, 1967 |
| Hin6I | GCGC | 4 cut(s) | 22, 1553, 1619, 1967 |
| HinP1I | GCGC | 4 cut(s) | 22, 1553, 1619, 1967 |
| HincII | GTYRAC | 5 cut(s) | 16, 1334, 1651, 2415, 2724 |
| HindII | GTYRAC | 5 cut(s) | 16, 1334, 1651, 2415, 2724 |
| HindIII | AAGCTT | 5 cut(s) | 182, 1274, 1445, 2457, 2565 |
| HpaII | CCGG | 1 cut(s) | 2543 |
| HphI | GGTGA | 7 cut(s) | 235, 460, 1201, 1394, 1708, 1778, 2207 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 86 |
| HpyAV | CCTTC | 9 cut(s) | 4, 256, 283, 668, 697, 1241, 1913, 1993, 2277 |
| HpyCH4III | ACNGT | 8 cut(s) | 418, 835, 1234, 1496, 1810, 1926, 2231, 2658 |
| HpyCH4IV | ACGT | 4 cut(s) | 97, 211, 305, 3043 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 845, 905, 1120, 1282, 2921 |
| HpySE526I | ACGT | 4 cut(s) | 97, 211, 305, 3043 |
| Hsp92I | GRCGYC | 3 cut(s) | 48, 729, 1967 |
| HspAI | GCGC | 4 cut(s) | 22, 1553, 1619, 1967 |
| KasI | GGCGCC | 1 cut(s) | 1966 |
| Ksp22I | TGATCA | 1 cut(s) | 1768 |
| LguI | GCTCTTC | 1 cut(s) | 1287 |
| LmnI | GCTCC | 9 cut(s) | 71, 896, 1618, 1936, 2091, 2161, 2371, 3001, 3068 |
| Lsp1109I | GCAGC | 8 cut(s) | 835, 859, 892, 1096, 1153, 1156, 1978, 2782 |
| MaeI | CTAG | 5 cut(s) | 156, 398, 2270, 2375, 3103 |
| MaeII | ACGT | 4 cut(s) | 97, 211, 305, 3043 |
| MbiI | CCGCTC | 1 cut(s) | 66 |
| MfeI | CAATTG | 2 cut(s) | 1286, 2850 |
| MflI | RGATCY | 8 cut(s) | 706, 2038, 2350, 2497, 2518, 2679, 2782, 2822 |
| MhlI | GDGCHC | 3 cut(s) | 192, 944, 1834 |
| Mly113I | GGCGCC | 1 cut(s) | 1967 |
| MlyI | GAGTC | 3 cut(s) | 662, 695, 1664 |
| MmeI | TCCRAC | 2 cut(s) | 1062, 3102 |
| Mph1103I | ATGCAT | 2 cut(s) | 994, 2263 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2512, 2538 |
| MseI | TTAA | 9 cut(s) | 660, 749, 1236, 1449, 1742, 2408, 2834, 2870, 2901 |
| MslI | CAYNNNNRTG | 5 cut(s) | 488, 1122, 1694, 1860, 2064 |
| MspA1I | CMGCKG | 2 cut(s) | 872, 1973 |
| MspI | CCGG | 1 cut(s) | 2543 |
| MspR9I | CCNGG | 4 cut(s) | 530, 776, 1399, 1703 |
| MunI | CAATTG | 2 cut(s) | 1286, 2850 |
| MvaI | CCWGG | 4 cut(s) | 530, 776, 1399, 1703 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 845, 905, 1120, 1282, 2921 |
| NarI | GGCGCC | 1 cut(s) | 1967 |
| NcoI | CCATGG | 2 cut(s) | 483, 1778 |
| NdeI | CATATG | 2 cut(s) | 2487, 2557 |
| NlaIV | GGNNCC | 3 cut(s) | 1968, 2757, 3064 |
| NsiI | ATGCAT | 2 cut(s) | 994, 2263 |
| NspI | RCATGY | 2 cut(s) | 588, 2208 |
| NspV | TTCGAA | 4 cut(s) | 511, 966, 1843, 2506 |
| PagI | TCATGA | 1 cut(s) | 2625 |
| PaqCI | CACCTGC | 1 cut(s) | 211 |
| PciI | ACATGT | 1 cut(s) | 2204 |
| PciSI | GCTCTTC | 1 cut(s) | 1287 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1840, 2071 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2512, 2538 |
| PfeI | GAWTC | 8 cut(s) | 112, 323, 518, 1361, 1394, 2378, 2403, 2716 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2053, 2320, 2960 |
| PkrI | GCNGC | 9 cut(s) | 850, 874, 907, 1086, 1168, 1171, 1993, 2451, 2797 |
| PleI | GAGTC | 3 cut(s) | 662, 694, 1663 |
| PluTI | GGCGCC | 1 cut(s) | 1970 |
| PmaCI | CACGTG | 1 cut(s) | 98 |
| PmlI | CACGTG | 1 cut(s) | 98 |
| PpsI | GAGTC | 3 cut(s) | 662, 694, 1663 |
| Ppu21I | YACGTR | 1 cut(s) | 98 |
| PscI | ACATGT | 1 cut(s) | 2204 |
| PsiI | TTATAA | 2 cut(s) | 1002, 2663 |
| Psp124BI | GAGCTC | 1 cut(s) | 192 |
| Psp6I | CCWGG | 4 cut(s) | 528, 774, 1397, 1701 |
| PspCI | CACGTG | 1 cut(s) | 98 |
| PspEI | GGTNACC | 2 cut(s) | 1382, 1455 |
| PspGI | CCWGG | 4 cut(s) | 528, 774, 1397, 1701 |
| PspN4I | GGNNCC | 3 cut(s) | 1968, 2757, 3064 |
| PspPI | GGNCC | 6 cut(s) | 743, 1205, 1319, 1643, 2122, 2212 |
| PstI | CTGCAG | 2 cut(s) | 910, 2937 |
| PsuI | RGATCY | 8 cut(s) | 706, 2038, 2350, 2497, 2518, 2679, 2782, 2822 |
| PvuII | CAGCTG | 2 cut(s) | 872, 1973 |
| RsaI | GTAC | 5 cut(s) | 317, 766, 832, 1252, 2696 |
| RsaNI | GTAC | 5 cut(s) | 316, 765, 831, 1251, 2695 |
| RseI | CAYNNNNRTG | 5 cut(s) | 488, 1122, 1694, 1860, 2064 |
| SacI | GAGCTC | 1 cut(s) | 192 |
| SalI | GTCGAC | 3 cut(s) | 14, 1332, 2413 |
| SapI | GCTCTTC | 1 cut(s) | 1287 |
| SaqAI | TTAA | 9 cut(s) | 660, 749, 1236, 1449, 1742, 2408, 2834, 2870, 2901 |
| SatI | GCNGC | 9 cut(s) | 849, 873, 906, 1085, 1167, 1170, 1992, 2450, 2796 |
| Sau96I | GGNCC | 6 cut(s) | 743, 1205, 1319, 1643, 2122, 2212 |
| ScaI | AGTACT | 1 cut(s) | 832 |
| SchI | GAGTC | 3 cut(s) | 662, 695, 1664 |
| ScrFI | CCNGG | 4 cut(s) | 530, 776, 1399, 1703 |
| SduI | GDGCHC | 3 cut(s) | 192, 944, 1834 |
| SfcI | CTRYAG | 5 cut(s) | 906, 1230, 1280, 2326, 2933 |
| SfoI | GGCGCC | 1 cut(s) | 1968 |
| SfuI | TTCGAA | 4 cut(s) | 511, 966, 1843, 2506 |
| SinI | GGWCC | 3 cut(s) | 1643, 2122, 2212 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 488, 1122, 1694, 1860, 2064 |
| SmlI | CTYRAG | 3 cut(s) | 185, 2012, 2562 |
| SmoI | CTYRAG | 3 cut(s) | 185, 2012, 2562 |
| SsiI | CCGC | 5 cut(s) | 64, 297, 429, 1407, 2449 |
| SspDI | GGCGCC | 1 cut(s) | 1966 |
| SspI | AATATT | 3 cut(s) | 613, 810, 2690 |
| SspMI | CTAG | 5 cut(s) | 156, 398, 2270, 2375, 3103 |
| SstI | GAGCTC | 1 cut(s) | 192 |
| StyD4I | CCNGG | 4 cut(s) | 528, 774, 1397, 1701 |
| StyI | CCWWGG | 4 cut(s) | 483, 1778, 2118, 2954 |
| TaaI | ACNGT | 8 cut(s) | 418, 835, 1234, 1496, 1810, 1926, 2231, 2658 |
| TaiI | ACGT | 4 cut(s) | 100, 214, 308, 3046 |
| TaqII | GACCGA | 1 cut(s) | 1248 |
| TatI | WGTACW | 3 cut(s) | 315, 830, 2694 |
| TauI | GCSGC | 1 cut(s) | 2452 |
| TfiI | GAWTC | 8 cut(s) | 112, 323, 518, 1361, 1394, 2378, 2403, 2716 |
| Tru1I | TTAA | 9 cut(s) | 660, 749, 1236, 1449, 1742, 2408, 2834, 2870, 2901 |
| Tru9I | TTAA | 9 cut(s) | 660, 749, 1236, 1449, 1742, 2408, 2834, 2870, 2901 |
| TscAI | CASTG | 5 cut(s) | 1185, 1191, 1984, 2236, 2661 |
| TseI | GCWGC | 8 cut(s) | 848, 872, 905, 1084, 1166, 1169, 1991, 2795 |
| TspGWI | ACGGA | 1 cut(s) | 2120 |
| TspRI | CASTG | 5 cut(s) | 1185, 1191, 1984, 2236, 2661 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2053, 2320, 2960 |
| VpaK11BI | GGWCC | 3 cut(s) | 1643, 2122, 2212 |
| XapI | RAATTY | 4 cut(s) | 333, 968, 1579, 2150 |
| XceI | RCATGY | 2 cut(s) | 588, 2208 |
| XmiI | GTMKAC | 5 cut(s) | 15, 361, 1333, 2414, 2944 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2512, 2538 |
| XspI | CTAG | 5 cut(s) | 156, 398, 2270, 2375, 3103 |
| ZrmI | AGTACT | 1 cut(s) | 832 |
| Zsp2I | ATGCAT | 2 cut(s) | 994, 2263 |