Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

17711470 .. 17713314

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0201100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGACCACCACCACCTCTACCTCCCCATGGAACTCTCGCTTAAGAGAGCTGGCAAAGCAATGCCTCTTCTCCGAAGCTCTCACTCTTTACCGCCAAATGCTCCGATTCGGCCACCCACCCAACGCTTTCACTTTCCCCTTCGCTCTCAAATCCTGCGCCGCCCTCTCCCTCCCTCTCACCGGCTCACTCCTCCATTCCCACGTCGTCAAAACCGGGTGCGAGCCCGACCCCTTCGTACAAACTTCTTTGGTTTCCATGTACTGTAAATGCTGTTCGACCGATGACGCACGCAAGGTGTTCGATGAAAATCCCCACTCGAGGAAGCTGACTGTTTGCTACAATGCTTTGATATCTGGGCATGCTTCGAATTCGAAATTCCATGATGCGGTTTCGTTGTTTCGTCGAATGAGGGAGGAGGGCGTGGAGGTTAATTCGGTTACCATGTTGGGTTTGATTCCGGGGTGCGTGGCTCCGGTGCATCTGAGTCTTGGGATGTGCCTTCATGGTTCTACTGTGAAGTGCGGTTTCGACGTTGATTTGTCTGTGAGGAATTGTTTGCTTACAATGTATGTGAAATGCGGGTCGGTTGATAATGCAAGGAAGATGTTTAATGCGATGCCTGAAAAGGGTTTGATTACTTGGAATGCAATGATTTCCGGGTATGCGCAGAATGGGCTTGCTACTCATGTTTTGAATCTGTACAGGGAGATGGAATCTTGTGGTGTTTGCCCTGATCCTGTGACGCTTGTTGGCGTTCTATCCTCGTGTACTCACCTTGGTGCGCATGGCGTTGGACGTGAGGTAGAAAGACGGATAGAGTCTAGTGGATTTGGTTCCAATCCGTATTTGAAAAATGCTCTGATCAATATGTACGCTAGGTGTGGTAATTTGGTGAAGGCTCATGCTATTTTTGATGTCATGCCTGAAAAAAGCTTAGTTTCTTGGACAGCGATTATCAGTGGGTATGGGATGCATGGACATGGAGAGATTGCATTGGAGCTCTTCAAGGAAATGATCGCGACTGGAATCAGGCCTGACAAAGCCATGTTTGTGACTGTTTTGTCTGCCTGTAGCCATGCAGGATTGACTGATGAGGGACTGGAGTGTTTTGCTGCAATGGAGAAAAACTATAGGTTGCAGCCTGGTCCAGAGCATTATTCTTGCATGGTGGATCTTTTAGGGCGTGCAGGTCGGCTTAAAGAAGCAAAAGAGCTAATTGACTCAATGCAGGTAAAGCCTGATGGTGGAGTATGGGGAGCCCTTTTGGGTGCCTGTAAAATACATAAAAATGTAGAACTAGCAGAGATAGCTTTTGAACATGTCATCGAGCTAGAACCAACTAATAGTGGTTATTATGTGTTGATGTCAAATATATACTCTGATGCAAATAATCTAGAAGGGGTTTTAAAGGTTCGGGTTATGATGAAGGAGAGGCAGCTCAAAAAGGAGCCAGGGTATAGCTATGTTGAGTGTCAAGGAAGAGTTCATGTTTTCTTGGCTGGGGATAGAAGCCATTGTCAGACAGAAGATATATACAGCATATTGGAGGAGTTAGAAAATTTAGCCCGGGAACCTGGCTCGTCCAATGAGAATGAAGGAGAAAGAAACAAAGAGCAAGTAATTGGTGTTGGTGTTCACAGTGAAAAATTGGCAATTGCATTTGGGCTCTTGAACACTGAACCAGGGACTGAGATTGTAGTGATAAAGAACCTAAGGGTGTGTGGAGACTGCCACTTGTTTATCAAGTCGATTAGCAAGATTGTGGATCGTCAGTTTGTGGTCAGAGATGCTACTCGTTTTCACCATTTCAGAAATGGGATTTGTTCTTGTAAAGACTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

614

Amino Acids

67.9

Weight (kDa)

6.78

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	110 - 156	2.3e-10	PPR repeat family
PPR	PF01535	111 - 141	1.2e-07	PPR repeat
PPR_2	PF13041	211 - 256	4.3e-08	PPR repeat family
PPR	PF01535	212 - 242	3.7e-08	PPR repeat
PPR_2	PF13041	311 - 358	2.7e-08	PPR repeat family
PPR	PF01535	313 - 342	6.8e-07	PPR repeat
E_motif	PF20431	428 - 490	1.2e-18	E motif
DYW_deaminase	PF14432	537 - 614	5e-33	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1060
Acc16I	TGCGCA	2 cut(s)	666, 783
Acc36I	ACCTGC	2 cut(s)	1178, 1219
AccB1I	GGYRCC	1 cut(s)	1268
AccII	CGCG	1 cut(s)	1019
AciI	CCGC	5 cut(s)	91, 159, 386, 522, 579
AclWI	GGATC	3 cut(s)	728, 1179, 1773
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	3 cut(s)	367, 374, 1558
AfaI	GTAC	5 cut(s)	237, 260, 701, 769, 872
AfiI	CCNNNNNNNGG	6 cut(s)	27, 179, 318, 385, 626, 1244
AflII	CTTAAG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	1318
AgsI	TTSAA	5 cut(s)	694, 850, 1006, 1316, 1672
AjiI	CACGTC	2 cut(s)	202, 797
AjnI	CCWGG	4 cut(s)	1141, 1450, 1573, 1681
AleI	CACNNNNGTG	1 cut(s)	777
Alw21I	GWGCWC	1 cut(s)	1002
Alw26I	GTCTC	1 cut(s)	1719
AlwI	GGATC	3 cut(s)	728, 1179, 1773
AlwNI	CAGNNNCTG	1 cut(s)	1688
Ama87I	CYCGRG	2 cut(s)	316, 1566
AoxI	GGCC	2 cut(s)	109, 1031
ApeKI	GCWGC	3 cut(s)	1112, 1138, 1435
ApoI	RAATTY	3 cut(s)	367, 374, 1558
AspLEI	GCGC	3 cut(s)	158, 667, 784
AspS9I	GGNCC	1 cut(s)	1145
AsuC2I	CCSGG	5 cut(s)	214, 459, 658, 1567, 1568
AsuHPI	GGTGA	4 cut(s)	169, 764, 904, 1793
AsuII	TTCGAA	2 cut(s)	365, 371
AvaI	CYCGRG	2 cut(s)	316, 1566
AvaII	GGWCC	1 cut(s)	1145
AxyI	CCTNAGG	1 cut(s)	1712
BanI	GGYRCC	1 cut(s)	1268
BanII	GRGCYC	4 cut(s)	225, 1002, 1261, 1668
BauI	CACGAG	1 cut(s)	763
Bbv12I	GWGCWC	1 cut(s)	1002
BbvI	GCAGC	3 cut(s)	1099, 1150, 1447
BccI	CCATC	2 cut(s)	703, 1235
BcgI	CGANNNNNNTGC	2 cut(s)	280, 314
BciT130I	CCWGG	4 cut(s)	1143, 1452, 1575, 1683
BclI	TGATCA	1 cut(s)	861
BcnI	CCSGG	5 cut(s)	214, 459, 658, 1567, 1568
BcoDI	GTCTC	1 cut(s)	1719
BfaI	CTAG	5 cut(s)	822, 876, 1298, 1331, 1394
BfmI	CTRYAG	2 cut(s)	1069, 1129
BfrI	CTTAAG	1 cut(s)	40
BfuAI	ACCTGC	2 cut(s)	1178, 1219
BisI	GCNGC	4 cut(s)	159, 1113, 1139, 1436
BlsI	GCNGC	4 cut(s)	160, 1114, 1140, 1437
Bme1390I	CCNGG	9 cut(s)	214, 459, 658, 1143, 1452, 1567, 1568, 1575, 1683
Bme18I	GGWCC	1 cut(s)	1145
BmeT110I	CYCGRG	2 cut(s)	316, 1566
BmgBI	CACGTC	2 cut(s)	202, 797
BmgT120I	GGNCC	1 cut(s)	1145
BmiI	GGNNCC	6 cut(s)	471, 835, 1258, 1270, 1449, 1572
BmrFI	CCNGG	9 cut(s)	214, 459, 658, 1143, 1452, 1567, 1568, 1575, 1683
BmsI	GCATC	6 cut(s)	373, 487, 606, 960, 1372, 1777
BpmI	CTGGAG	1 cut(s)	1121
Bpu14I	TTCGAA	2 cut(s)	365, 371
BpuMI	CCSGG	5 cut(s)	214, 459, 658, 1567, 1568
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	6 cut(s)	26, 458, 775, 1451, 1566, 1682
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	1439, 1469
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 179, 318, 385, 626, 1244
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	3 cut(s)	1027, 1104, 1844
Bse21I	CCTNAGG	1 cut(s)	1712
Bse3DI	GCAATG	3 cut(s)	65, 654, 1122
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	4 cut(s)	1143, 1452, 1575, 1683
BseDI	CCNNGG	6 cut(s)	26, 458, 775, 1451, 1566, 1682
BseGI	GGATG	2 cut(s)	498, 975
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	6 cut(s)	27, 179, 318, 385, 626, 1244
BseMI	GCAATG	3 cut(s)	65, 654, 1122
BseMII	CTCAG	2 cut(s)	473, 1680
BseNI	ACTGG	3 cut(s)	1027, 1104, 1844
BseRI	GAGGAG	3 cut(s)	179, 428, 1562
BseXI	GCAGC	3 cut(s)	1099, 1150, 1447
BseYI	CCCAGC	1 cut(s)	1499
BsgI	GTGCAG	1 cut(s)	1206
Bsh1236I	CGCG	1 cut(s)	1019
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	111, 1033
BshNI	GGYRCC	1 cut(s)	1268
BsiEI	CGRYCG	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	1002
BsiHKCI	CYCGRG	2 cut(s)	316, 1566
BsiSI	CCGG	6 cut(s)	180, 213, 458, 473, 657, 1567
BslFI	GGGAC	2 cut(s)	1110, 1699
BslI	CCNNNNNNNGG	6 cut(s)	27, 179, 318, 385, 626, 1244
BsmAI	GTCTC	1 cut(s)	1719
BsmFI	GGGAC	2 cut(s)	1110, 1699
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	2 cut(s)	111, 1033
BsoBI	CYCGRG	2 cut(s)	316, 1566
Bsp119I	TTCGAA	2 cut(s)	365, 371
Bsp1286I	GDGCHC	4 cut(s)	225, 1002, 1261, 1668
Bsp1407I	TGTACA	1 cut(s)	699
Bsp143I	GATC	5 cut(s)	733, 861, 1014, 1171, 1765
Bsp19I	CCATGG	1 cut(s)	26
Bsp68I	TCGCGA	1 cut(s)	1019
BspACI	CCGC	5 cut(s)	91, 159, 386, 522, 579
BspANI	GGCC	2 cut(s)	111, 1033
BspCNI	CTCAG	2 cut(s)	474, 1681
BspFNI	CGCG	1 cut(s)	1019
BspLI	GGNNCC	6 cut(s)	471, 835, 1258, 1270, 1449, 1572
BspMI	ACCTGC	2 cut(s)	1178, 1219
BspPI	GGATC	3 cut(s)	728, 1179, 1773
BspQI	GCTCTTC	1 cut(s)	1007
BspT104I	TTCGAA	2 cut(s)	365, 371
BspT107I	GGYRCC	1 cut(s)	1268
BspTI	CTTAAG	1 cut(s)	40
BsrDI	GCAATG	3 cut(s)	65, 654, 1122
BsrFI	RCCGGY	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	699
BsrI	ACTGG	3 cut(s)	1027, 1104, 1844
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	6 cut(s)	26, 458, 775, 1451, 1566, 1682
BssMI	GATC	5 cut(s)	733, 861, 1014, 1171, 1765
BssSI	CACGAG	1 cut(s)	763
BssT1I	CCWWGG	2 cut(s)	26, 775
Bst2BI	CACGAG	1 cut(s)	763
Bst2UI	CCWGG	4 cut(s)	1143, 1452, 1575, 1683
Bst4CI	ACNGT	5 cut(s)	263, 331, 514, 1057, 1640
Bst6I	CTCTTC	3 cut(s)	71, 1007, 1474
BstAFI	CTTAAG	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	699
BstBI	TTCGAA	2 cut(s)	365, 371
BstC8I	GCNNGC	6 cut(s)	51, 221, 289, 360, 678, 1185
BstDEI	CTNAG	4 cut(s)	482, 934, 1689, 1712
BstDSI	CCRYGG	1 cut(s)	26
BstEII	GGTNACC	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	498, 975
BstFNI	CGCG	1 cut(s)	1019
BstHHI	GCGC	3 cut(s)	158, 667, 784
BstKTI	GATC	5 cut(s)	736, 864, 1017, 1174, 1768
BstMAI	GTCTC	1 cut(s)	1719
BstMBI	GATC	5 cut(s)	733, 861, 1014, 1171, 1765
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 673, 1234, 1307
BstNI	CCWGG	4 cut(s)	1143, 1452, 1575, 1683
BstNSI	RCATGY	2 cut(s)	362, 1322
BstPI	GGTNACC	1 cut(s)	436
BstSCI	CCNGG	9 cut(s)	212, 457, 656, 1141, 1450, 1565, 1566, 1573, 1681
BstSFI	CTRYAG	2 cut(s)	1069, 1129
BstUI	CGCG	1 cut(s)	1019
BstV1I	GCAGC	3 cut(s)	1099, 1150, 1447
BstX2I	RGATCY	1 cut(s)	1171
BstYI	RGATCY	1 cut(s)	1171
Bsu36I	CCTNAGG	1 cut(s)	1712
BsuRI	GGCC	2 cut(s)	111, 1033
BtgI	CCRYGG	1 cut(s)	26
BtgZI	GCGATG	1 cut(s)	629
BtrI	CACGTC	2 cut(s)	202, 797
BtsCI	GGATG	2 cut(s)	498, 975
BtsIMutI	CAGTG	3 cut(s)	964, 1645, 1674
BtuMI	TCGCGA	1 cut(s)	1019
BveI	ACCTGC	2 cut(s)	1178, 1219
Cac8I	GCNNGC	6 cut(s)	51, 221, 289, 360, 678, 1185
CaiI	CAGNNNCTG	1 cut(s)	1688
CfoI	GCGC	3 cut(s)	158, 667, 784
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	1145
Cfr9I	CCCGGG	1 cut(s)	1566
CseI	GACGC	2 cut(s)	293, 751
Csp6I	GTAC	5 cut(s)	236, 259, 700, 768, 871
CviQI	GTAC	5 cut(s)	236, 259, 700, 768, 871
DdeI	CTNAG	4 cut(s)	482, 934, 1689, 1712
DpnI	GATC	5 cut(s)	735, 863, 1016, 1173, 1767
DpnII	GATC	5 cut(s)	733, 861, 1014, 1171, 1765
DraI	TTTAAA	1 cut(s)	1407
DrdI	GACNNNNNNGTC	1 cut(s)	1060
DseDI	GACNNNNNNGTC	1 cut(s)	1060
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	3 cut(s)	71, 1007, 1474
EarI	CTCTTC	3 cut(s)	71, 1007, 1474
Ecl136II	GAGCTC	1 cut(s)	1000
Eco130I	CCWWGG	2 cut(s)	26, 775
Eco147I	AGGCCT	1 cut(s)	1033
Eco24I	GRGCYC	4 cut(s)	225, 1002, 1261, 1668
Eco32I	GATATC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	1145
Eco53kI	GAGCTC	1 cut(s)	1000
Eco81I	CCTNAGG	1 cut(s)	1712
Eco88I	CYCGRG	2 cut(s)	316, 1566
Eco91I	GGTNACC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	367
EcoRII	CCWGG	4 cut(s)	1141, 1450, 1573, 1681
EcoRV	GATATC	1 cut(s)	351
EcoT14I	CCWWGG	2 cut(s)	26, 775
EcoT22I	ATGCAT	1 cut(s)	975
EcoT38I	GRGCYC	4 cut(s)	225, 1002, 1261, 1668
ErhI	CCWWGG	2 cut(s)	26, 775
FaqI	GGGAC	2 cut(s)	1110, 1699
FauI	CCCGC	1 cut(s)	572
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	4 cut(s)	159, 1113, 1139, 1436
FokI	GGATG	2 cut(s)	505, 982
FriOI	GRGCYC	4 cut(s)	225, 1002, 1261, 1668
Fsp4HI	GCNGC	4 cut(s)	159, 1113, 1139, 1436
FspAI	RTGCGCAY	1 cut(s)	783
FspBI	CTAG	5 cut(s)	822, 876, 1298, 1331, 1394
FspI	TGCGCA	2 cut(s)	666, 783
GlaI	GCGC	3 cut(s)	157, 666, 783
GluI	GCNGC	4 cut(s)	159, 1113, 1139, 1436
GsaI	CCCAGC	1 cut(s)	1503
GsuI	CTGGAG	1 cut(s)	1121
HaeIII	GGCC	2 cut(s)	111, 1033
HapII	CCGG	6 cut(s)	180, 213, 458, 473, 657, 1567
HgaI	GACGC	2 cut(s)	293, 751
HhaI	GCGC	3 cut(s)	158, 667, 784
Hin6I	GCGC	3 cut(s)	156, 665, 782
HinP1I	GCGC	3 cut(s)	156, 665, 782
HindIII	AAGCTT	1 cut(s)	931
HinfI	GANTC	8 cut(s)	105, 454, 484, 694, 713, 818, 1026, 1220
HpaII	CCGG	6 cut(s)	180, 213, 458, 473, 657, 1567
HphI	GGTGA	4 cut(s)	169, 764, 904, 1793
Hpy166II	GTNNAC	2 cut(s)	768, 1636
Hpy188I	TCNGA	8 cut(s)	73, 104, 483, 861, 1381, 1521, 1784, 1811
Hpy188III	TCNNGA	4 cut(s)	1018, 1148, 1394, 1669
Hpy8I	GTNNAC	2 cut(s)	768, 1636
Hpy99I	CGWCG	3 cut(s)	206, 405, 533
HpyAV	CCTTC	7 cut(s)	148, 241, 509, 889, 1391, 1420, 1589
HpyCH4III	ACNGT	5 cut(s)	263, 331, 514, 1057, 1640
HpyCH4IV	ACGT	3 cut(s)	201, 531, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 673, 1234, 1307
HpyF3I	CTNAG	4 cut(s)	482, 934, 1689, 1712
HpySE526I	ACGT	3 cut(s)	201, 531, 796
HspAI	GCGC	3 cut(s)	156, 665, 782
Ksp22I	TGATCA	1 cut(s)	861
Kzo9I	GATC	5 cut(s)	733, 861, 1014, 1171, 1765
LguI	GCTCTTC	1 cut(s)	1007
LmnI	GCTCC	5 cut(s)	105, 475, 997, 1256, 1447
Lsp1109I	GCAGC	3 cut(s)	1099, 1150, 1447
LweI	GCATC	6 cut(s)	373, 487, 606, 960, 1372, 1777
MaeI	CTAG	5 cut(s)	822, 876, 1298, 1331, 1394
MaeII	ACGT	3 cut(s)	201, 531, 796
MaeIII	GTNAC	3 cut(s)	436, 739, 1051
MalI	GATC	5 cut(s)	735, 863, 1016, 1173, 1767
MboI	GATC	5 cut(s)	733, 861, 1014, 1171, 1765
MboII	GAAGA	5 cut(s)	58, 613, 994, 1491, 1538
MfeI	CAATTG	1 cut(s)	1653
MflI	RGATCY	1 cut(s)	1171
MhlI	GDGCHC	4 cut(s)	225, 1002, 1261, 1668
MlyI	GAGTC	3 cut(s)	493, 827, 1214
MmeI	TCCRAC	1 cut(s)	772
Mph1103I	ATGCAT	1 cut(s)	975
MseI	TTAA	5 cut(s)	41, 429, 609, 1197, 1406
MslI	CAYNNNNRTG	4 cut(s)	777, 978, 1049, 1287
MspCI	CTTAAG	1 cut(s)	40
MspI	CCGG	6 cut(s)	180, 213, 458, 473, 657, 1567
MspR9I	CCNGG	9 cut(s)	214, 459, 658, 1143, 1452, 1567, 1568, 1575, 1683
MunI	CAATTG	1 cut(s)	1653
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	4 cut(s)	1143, 1452, 1575, 1683
MvnI	CGCG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	4 cut(s)	55, 673, 1234, 1307
NciI	CCSGG	5 cut(s)	214, 459, 658, 1567, 1568
NcoI	CCATGG	1 cut(s)	26
NdeII	GATC	5 cut(s)	733, 861, 1014, 1171, 1765
NlaIV	GGNNCC	6 cut(s)	471, 835, 1258, 1270, 1449, 1572
NmuCI	GTSAC	2 cut(s)	739, 1051
NruI	TCGCGA	1 cut(s)	1019
NsbI	TGCGCA	2 cut(s)	666, 783
NsiI	ATGCAT	1 cut(s)	975
NspI	RCATGY	2 cut(s)	362, 1322
NspV	TTCGAA	2 cut(s)	365, 371
OliI	CACNNNNGTG	1 cut(s)	777
PaeI	GCATGC	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	1033
PciI	ACATGT	1 cut(s)	1318
PciSI	GCTCTTC	1 cut(s)	1007
PctI	GAATGC	1 cut(s)	649
PfeI	GAWTC	5 cut(s)	105, 454, 694, 713, 1026
PkrI	GCNGC	4 cut(s)	160, 1114, 1140, 1437
PleI	GAGTC	3 cut(s)	492, 826, 1214
PpsI	GAGTC	3 cut(s)	492, 826, 1214
PscI	ACATGT	1 cut(s)	1318
Psp124BI	GAGCTC	1 cut(s)	1002
Psp6I	CCWGG	4 cut(s)	1141, 1450, 1573, 1681
PspEI	GGTNACC	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	1499
PspGI	CCWGG	4 cut(s)	1141, 1450, 1573, 1681
PspN4I	GGNNCC	6 cut(s)	471, 835, 1258, 1270, 1449, 1572
PspPI	GGNCC	1 cut(s)	1145
PspXI	VCTCGAGB	1 cut(s)	316
PsrI	GAACNNNNNNTAC	2 cut(s)	256, 288
PstNI	CAGNNNCTG	1 cut(s)	1688
PsuI	RGATCY	1 cut(s)	1171
RruI	TCGCGA	1 cut(s)	1019
RsaI	GTAC	5 cut(s)	237, 260, 701, 769, 872
RsaNI	GTAC	5 cut(s)	236, 259, 700, 768, 871
RseI	CAYNNNNRTG	4 cut(s)	777, 978, 1049, 1287
SacI	GAGCTC	1 cut(s)	1002
SapI	GCTCTTC	1 cut(s)	1007
SaqAI	TTAA	5 cut(s)	41, 429, 609, 1197, 1406
SatI	GCNGC	4 cut(s)	159, 1113, 1139, 1436
Sau3AI	GATC	5 cut(s)	733, 861, 1014, 1171, 1765
Sau96I	GGNCC	1 cut(s)	1145
SchI	GAGTC	3 cut(s)	493, 827, 1214
ScrFI	CCNGG	9 cut(s)	214, 459, 658, 1143, 1452, 1567, 1568, 1575, 1683
SduI	GDGCHC	4 cut(s)	225, 1002, 1261, 1668
SfaNI	GCATC	6 cut(s)	373, 487, 606, 960, 1372, 1777
SfcI	CTRYAG	2 cut(s)	1069, 1129
Sfr274I	CTCGAG	1 cut(s)	316
SfuI	TTCGAA	2 cut(s)	365, 371
SinI	GGWCC	1 cut(s)	1145
SlaI	CTCGAG	1 cut(s)	316
SmaI	CCCGGG	1 cut(s)	1568
SmiMI	CAYNNNNRTG	4 cut(s)	777, 978, 1049, 1287
SmlI	CTYRAG	2 cut(s)	40, 316
SmoI	CTYRAG	2 cut(s)	40, 316
SphI	GCATGC	1 cut(s)	362
SseBI	AGGCCT	1 cut(s)	1033
SsiI	CCGC	5 cut(s)	91, 159, 386, 522, 579
SspMI	CTAG	5 cut(s)	822, 876, 1298, 1331, 1394
SstI	GAGCTC	1 cut(s)	1002
StuI	AGGCCT	1 cut(s)	1033
StyD4I	CCNGG	9 cut(s)	212, 457, 656, 1141, 1450, 1565, 1566, 1573, 1681
StyI	CCWWGG	2 cut(s)	26, 775
TaaI	ACNGT	5 cut(s)	263, 331, 514, 1057, 1640
TaiI	ACGT	3 cut(s)	204, 534, 799
TaqI	TCGA	9 cut(s)	275, 300, 317, 365, 371, 403, 528, 1326, 1748
TaqII	GACCGA	1 cut(s)	293
TatI	WGTACW	3 cut(s)	258, 699, 767
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	5 cut(s)	105, 454, 694, 713, 1026
Tru1I	TTAA	5 cut(s)	41, 429, 609, 1197, 1406
Tru9I	TTAA	5 cut(s)	41, 429, 609, 1197, 1406
TscAI	CASTG	3 cut(s)	964, 1645, 1681
TseFI	GTSAC	2 cut(s)	739, 1051
TseI	GCWGC	3 cut(s)	1112, 1138, 1435
Tsp45I	GTSAC	2 cut(s)	739, 1051
TspDTI	ATGAA	5 cut(s)	318, 491, 1439, 1475, 1608
TspGWI	ACGGA	2 cut(s)	826, 831
TspMI	CCCGGG	1 cut(s)	1566
TspRI	CASTG	3 cut(s)	964, 1645, 1681
Vha464I	CTTAAG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	1145
XapI	RAATTY	3 cut(s)	367, 374, 1558
XbaI	TCTAGA	1 cut(s)	1393
XceI	RCATGY	2 cut(s)	362, 1322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1811
XhoI	CTCGAG	1 cut(s)	316
XmaI	CCCGGG	1 cut(s)	1566
XspI	CTAG	5 cut(s)	822, 876, 1298, 1331, 1394
Zsp2I	ATGCAT	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.