Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

13817788 .. 13819920

Gene Structure 2133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0148800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGGTTGTTTCCCTTCGAATTCTCAGAAACCATGGACTTCAACACAAGCTATTATCGCCTACATCCACCCACATTTCTCAACTCAAGAGAACCCTCTCTTCCTTCACTGACTCCGATGAACCATACTACTCCGCCGCCGCCACAACCACCACCGCCACCACCTCCGATTCCCAATCAGAATCACACTCTCTGGTCACCACAATCTGTTCAATGGTATACAAATCCTACTCCCCACAAACCCATTTCAAATCTTCACCTCCAAACCTCAATCTTGATCTAAACCCCGATTCTTTGACCCACGAACACGCCATTTCCGTCGTGGCTTCACTTTCCGACGAGGCCGGGTCCATGGTGGCCCTCAGCTTTTTCTACTGGGCTATTGGGTTTGCGAAATTTCGATACTTTATGCGGCTTTACATCTTCTGCGCCCTGTCGATTTTCGGCAATGGCAATTTGGAGAGGACCCATGAAGTGGTTCAGTGTATGGTGAGGAGTTTCGCTGAGATTGGGAGGTTTAAAGAGGCTGCCGATATGGTTTTCGAGATGCAGAACCAGGGCCTTGTGTTGAGTACTCGGACTTTGAACTGTGTTATCGGCATTGCTTGCGAAATGGGTTTAATGGAATATGCAGAGAACGTGTTCGACGAAATGTCTGTGAGAGGAGTGTGTCCTGATGGTTTGAGCTTTAAGTGTATGGTTGTTGGGTATTGTCGAAATGGTGCGGTTTTGGAGGTGGATAGGTGGTTGAGTAAGATGATTGAGAGGGGCTTTGTTTTGGATAATGCTAGTTTTACTTTGATTATTAGTGTGTTTTGTGAGAAGGGTTTTGTGAGTAGAGCGTCTTGGTGTTTCGATAAGATGAGTAAGATGGGGGTGAAGCCGAATTTGGTTAACTTTACGTCTTTGATACATGGGTTGTGCAAGAGGGGGAGTGTTAAGCAAGCGTTTGAGATGTTGGAGGAGATGGTTAGGAGAGGTTGGAAGCCGAATGTGTATACACATACCGCGTTGATTGATGGGTTGTGCAAGAAAGGTTGGACTGAGAGGGCGTTTAGGCTGTTTCTGAAGCTTGTCCGGAGTGATAGTTATAAGCCAAATGTGCATACTTATACTGCGATGATCAGTGGATATTGCAAGGAGGATAAAATGAGCCGTGCGGAGATGTTGTTGAGCAGAATGAAGGAACAAGAATTAGTTCCTAACACCAATACGTATACCACTCTCGTTTATGGGCATTGCAAAGCTGGGAATTTTGAAAGAGCATATGAATTGATGGATGTAATGAGTGAAGAAGGATTTGCTCCAAATATATGTACATACAATGCAGTTATGGACAGTCTCTGTAAAAAGGGGAGGGTCCAAGAAGCTTATAAACTGATTAAGAAGGGCCTTCGCCGAGGATTGCAGGCTGATAGAGTCACATATACCATTTTCATATCCGAGCACTGCAAACGGGGTGATATTAACAGTGCCCTAGCTTTTTTCAATAAGATGGTCAAGGCTGGATTGGAGCCTGATATACATTCATATACCACTTTGATTTCTGCCTTCTGCAGGCAAAAGAAAATGAAAGAAAGTGAGAAACTTTTCGAGGTAGCTGTAAGGCTTGGCTTGATTCCGGCCAAGGAGACCTATACATCCATGATATGTGGGTACTGTAGGGATGGAAATATTGCTTTGGCTGTAAAGTTCTTCCGCAGGATGAGTGATCATGGTTGTTCCCCGGATAGTTTTACTTATGGTGCTCTAATAAGTGGGCTCTGCAAGGAGGAGAAACTTGACGAGGCTCGTAAGTTATATGATACCATGATGGACAAGGGGCTGTCACCCTGTGAAGTTACTAGGTTGACATTAGCTCACGAGTATTGCCAAAAAGATGACTATGCCACTGCTATGGTCATCTTAGATAGGCTAGACAAGAAGTTCTGGATCCGCACGGTTAACACATTGGTCAGGAAGCTTTGTTGTGAGAAGAAAGTGGGAATAGCAGCATTGTTCTTTCACAAATTAGTTGATAAGGATCAGAATGTGGATCGTGTGACATTGCAAGCATTTATGACTGCATGTTATGAGAGCAACAAGTATGCTCTTCTTTCGGATTTGACTGAGAGAATCTCTAAAGGAATTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

710

Amino Acids

80.39

Weight (kDa)

8.71

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	191 - 238	1.6e-07	PPR repeat family
PPR_2	PF13041	262 - 308	3.7e-09	PPR repeat family
PPR_1	PF12854	290 - 323	2e-12	PPR repeat
PPR_2	PF13041	294 - 343	2.2e-18	PPR repeat family
PPR	PF01535	299 - 326	7.5e-07	PPR repeat
PPR_3	PF13812	318 - 378	1.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	326 - 354	1.9e-09	PPR repeat
PPR_2	PF13041	336 - 379	6.5e-10	PPR repeat family
PPR_long	PF17177	349 - 474	1.4e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	356 - 459	6e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	363 - 394	2.2e-09	PPR repeat
PPR_2	PF13041	365 - 414	2.4e-15	PPR repeat family
PPR	PF01535	369 - 396	1.9e-07	PPR repeat
PPR_3	PF13812	389 - 445	2.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	398 - 428	6.5e-10	PPR repeat
PPR_2	PF13041	404 - 449	5.1e-12	PPR repeat family
PPR	PF01535	404 - 433	6.1e-06	PPR repeat
PPR_1	PF12854	432 - 461	5.2e-09	PPR repeat
PPR_2	PF13041	435 - 484	7.4e-14	PPR repeat family
PPR	PF01535	439 - 468	9.4e-06	PPR repeat
PPR_1	PF12854	466 - 499	9.9e-09	PPR repeat
PPR_2	PF13041	471 - 519	2.3e-16	PPR repeat family
PPR_long	PF17177	478 - 638	1.9e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	502 - 531	6.1e-08	PPR repeat
PPR_2	PF13041	505 - 554	4.8e-11	PPR repeat family
PPR_1	PF12854	539 - 569	2.5e-08	PPR repeat
PPR	PF01535	544 - 573	1.5e-07	PPR repeat
PPR_2	PF13041	544 - 589	4.6e-16	PPR repeat family
PPR_1	PF12854	572 - 603	1e-11	PPR repeat
PPR	PF01535	578 - 608	5.5e-07	PPR repeat
PPR_2	PF13041	579 - 623	4.5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1089, 1371
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccI	GTMKAC	3 cut(s)	216, 995, 1214
AccII	CGCG	1 cut(s)	1007
AccIII	TCCGGA	1 cut(s)	1074
AclWI	GGATC	4 cut(s)	1924, 1937, 2028, 2040
AcoI	YGGCCR	1 cut(s)	1620
AcsI	RAATTY	4 cut(s)	18, 392, 883, 1249
AcuI	CTGAAG	1 cut(s)	1085
AdeI	CACNNNGTG	1 cut(s)	1832
AfaI	GTAC	3 cut(s)	571, 1315, 1655
AfiI	CCNNNNNNNGG	2 cut(s)	472, 1554
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	6 cut(s)	41, 210, 247, 583, 1256, 1486
AhdI	GACNNNNNGTC	1 cut(s)	649
AjnI	CCWGG	1 cut(s)	552
AjuI	GAANNNNNNNTTGG	2 cut(s)	869, 901
Alw21I	GWGCWC	2 cut(s)	1446, 1747
Alw26I	GTCTC	2 cut(s)	1343, 1622
AlwI	GGATC	4 cut(s)	1924, 1937, 2028, 2040
AlwNI	CAGNNNCTG	1 cut(s)	1341
Aor13HI	TCCGGA	1 cut(s)	1074
AoxI	GGCC	5 cut(s)	339, 354, 556, 1387, 1620
ApeKI	GCWGC	2 cut(s)	524, 1988
ApoI	RAATTY	4 cut(s)	18, 392, 883, 1249
Asp700I	GAANNNNTTC	4 cut(s)	474, 638, 1194, 1586
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	6 cut(s)	345, 355, 462, 556, 1357, 1387
AsuC2I	CCSGG	2 cut(s)	343, 1724
AsuHPI	GGTGA	6 cut(s)	187, 246, 499, 886, 1469, 1818
AsuII	TTCGAA	1 cut(s)	16
AvaII	GGWCC	3 cut(s)	345, 462, 1357
BaeGI	GKGCMC	1 cut(s)	1474
BaeI	ACNNNNGTAYC	2 cut(s)	899, 932
BamHI	GGATCC	1 cut(s)	1929
BanII	GRGCYC	1 cut(s)	1761
BauI	CACGAG	1 cut(s)	1859
Bbv12I	GWGCWC	2 cut(s)	1446, 1747
BbvCI	CCTCAGC	1 cut(s)	359
BbvI	GCAGC	2 cut(s)	511, 2000
BccI	CCATC	8 cut(s)	668, 862, 958, 1010, 1267, 1486, 1658, 1804
BceAI	ACGGC	1 cut(s)	1137
BciT130I	CCWGG	1 cut(s)	554
BclI	TGATCA	2 cut(s)	1119, 1708
BcnI	CCSGG	2 cut(s)	343, 1724
BcoDI	GTCTC	2 cut(s)	1343, 1622
BfaI	CTAG	5 cut(s)	786, 1475, 1842, 1913, 2131
BfmI	CTRYAG	2 cut(s)	1552, 1657
BisI	GCNGC	5 cut(s)	135, 138, 410, 525, 1989
BlsI	GCNGC	5 cut(s)	136, 139, 411, 526, 1990
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	3 cut(s)	343, 554, 1724
Bme18I	GGWCC	3 cut(s)	345, 462, 1357
BmeRI	GACNNNNNGTC	1 cut(s)	649
BmgT120I	GGNCC	6 cut(s)	345, 355, 462, 556, 1357, 1387
BmiI	GGNNCC	5 cut(s)	346, 464, 1358, 1512, 1931
BmrFI	CCNGG	3 cut(s)	343, 554, 1724
BmrI	ACTGGG	1 cut(s)	382
BmsI	GCATC	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	382
BplI	GAGNNNNNCTC	2 cut(s)	2099, 2131
Bpu10I	CCTNAGC	1 cut(s)	359
Bpu14I	TTCGAA	1 cut(s)	16
BpuEI	CTTGAG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	343, 1724
BsaAI	YACGTR	1 cut(s)	1212
BsaBI	GATNNNNATC	1 cut(s)	2019
BsaI	GGTCTC	1 cut(s)	1622
BsaJI	CCNNGG	6 cut(s)	31, 348, 553, 1396, 1623, 1722
BsaWI	WCCGGW	1 cut(s)	1074
BsaXI	ACNNNNNCTCC	4 cut(s)	1069, 1099, 1151, 1181
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 1554
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	4 cut(s)	451, 597, 1234, 2042
Bse8I	GATNNNNATC	1 cut(s)	2019
BseAI	TCCGGA	1 cut(s)	1074
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	6 cut(s)	31, 348, 553, 1396, 1623, 1722
BseGI	GGATG	5 cut(s)	62, 1282, 1637, 1669, 1707
BseJI	GATNNNNATC	1 cut(s)	2019
BseLI	CCNNNNNNNGG	2 cut(s)	472, 1554
BseMI	GCAATG	4 cut(s)	451, 597, 1234, 2042
BseMII	CTCAG	5 cut(s)	37, 373, 492, 1032, 2097
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	4 cut(s)	505, 675, 974, 1784
BseSI	GKGCMC	1 cut(s)	1474
BseXI	GCAGC	2 cut(s)	511, 2000
BseYI	CCCAGC	1 cut(s)	1244
Bsh1236I	CGCG	1 cut(s)	1007
BshFI	GGCC	5 cut(s)	341, 356, 558, 1389, 1622
BsiHKAI	GWGCWC	2 cut(s)	1446, 1747
BsiSI	CCGG	4 cut(s)	342, 1075, 1619, 1724
BslI	CCNNNNNNNGG	2 cut(s)	472, 1554
BsmAI	GTCTC	2 cut(s)	1343, 1622
BsnI	GGCC	5 cut(s)	341, 356, 558, 1389, 1622
Bso31I	GGTCTC	1 cut(s)	1622
Bsp119I	TTCGAA	1 cut(s)	16
Bsp1286I	GDGCHC	4 cut(s)	1446, 1474, 1747, 1761
Bsp13I	TCCGGA	1 cut(s)	1074
Bsp1407I	TGTACA	1 cut(s)	1313
Bsp143I	GATC	6 cut(s)	274, 1119, 1708, 1929, 2020, 2032
Bsp19I	CCATGG	2 cut(s)	31, 348
BspANI	GGCC	5 cut(s)	341, 356, 558, 1389, 1622
BspCNI	CTCAG	5 cut(s)	36, 372, 493, 1033, 2098
BspEI	TCCGGA	1 cut(s)	1074
BspFNI	CGCG	1 cut(s)	1007
BspLI	GGNNCC	5 cut(s)	346, 464, 1358, 1512, 1931
BspMAI	CTGCAG	1 cut(s)	1556
BspPI	GGATC	4 cut(s)	1924, 1937, 2028, 2040
BspQI	GCTCTTC	1 cut(s)	2094
BspT104I	TTCGAA	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	1622
BsrDI	GCAATG	4 cut(s)	451, 597, 1234, 2042
BsrGI	TGTACA	1 cut(s)	1313
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	6 cut(s)	31, 348, 553, 1396, 1623, 1722
BssMI	GATC	6 cut(s)	274, 1119, 1708, 1929, 2020, 2032
BssNAI	GTATAC	3 cut(s)	217, 996, 1215
BssSI	CACGAG	1 cut(s)	1859
BssT1I	CCWWGG	3 cut(s)	31, 348, 1623
Bst1107I	GTATAC	3 cut(s)	217, 996, 1215
Bst2BI	CACGAG	1 cut(s)	1859
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	5 cut(s)	587, 1337, 1469, 1658, 1939
Bst6I	CTCTTC	2 cut(s)	103, 2094
BstAPI	GCANNNNNTGC	1 cut(s)	603
BstAUI	TGTACA	1 cut(s)	1313
BstBAI	YACGTR	1 cut(s)	1212
BstBI	TTCGAA	1 cut(s)	16
BstC8I	GCNNGC	5 cut(s)	604, 942, 1407, 1556, 2049
BstDEI	CTNAG	6 cut(s)	23, 359, 501, 1041, 1903, 2106
BstDSI	CCRYGG	2 cut(s)	31, 348
BstEII	GGTNACC	1 cut(s)	193
BstENI	CCTNNNNNAGG	1 cut(s)	1552
BstF5I	GGATG	5 cut(s)	62, 1282, 1637, 1669, 1707
BstFNI	CGCG	1 cut(s)	1007
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	6 cut(s)	277, 1122, 1711, 1932, 2023, 2035
BstMAI	GTCTC	2 cut(s)	1343, 1622
BstMBI	GATC	6 cut(s)	274, 1119, 1708, 1929, 2020, 2032
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 603, 1099
BstNI	CCWGG	1 cut(s)	554
BstNSI	RCATGY	1 cut(s)	2067
BstPI	GGTNACC	1 cut(s)	193
BstSCI	CCNGG	3 cut(s)	341, 552, 1722
BstSFI	CTRYAG	2 cut(s)	1552, 1657
BstSLI	GKGCMC	1 cut(s)	1474
BstSNI	TACGTA	1 cut(s)	1212
BstUI	CGCG	1 cut(s)	1007
BstV1I	GCAGC	2 cut(s)	511, 2000
BstX2I	RGATCY	1 cut(s)	1929
BstXI	CCANNNNNNTGG	1 cut(s)	1894
BstYI	RGATCY	1 cut(s)	1929
BstZ17I	GTATAC	3 cut(s)	217, 996, 1215
BsuRI	GGCC	5 cut(s)	341, 356, 558, 1389, 1622
BtgI	CCRYGG	2 cut(s)	31, 348
BtgZI	GCGATG	1 cut(s)	1130
BtsCI	GGATG	5 cut(s)	62, 1282, 1637, 1669, 1707
BtsI	GCAGTG	2 cut(s)	1444, 1887
BtsIMutI	CAGTG	6 cut(s)	105, 485, 1129, 1444, 1474, 1887
Cac8I	GCNNGC	5 cut(s)	604, 942, 1407, 1556, 2049
CaiI	CAGNNNCTG	1 cut(s)	1341
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	6 cut(s)	345, 355, 462, 556, 1357, 1387
CseI	GACGC	1 cut(s)	828
Csp6I	GTAC	3 cut(s)	570, 1314, 1654
CviAII	CATG	8 cut(s)	32, 349, 467, 911, 1642, 1712, 1807, 2064
CviQI	GTAC	3 cut(s)	570, 1314, 1654
DdeI	CTNAG	6 cut(s)	23, 359, 501, 1041, 1903, 2106
DpnI	GATC	6 cut(s)	276, 1121, 1710, 1931, 2022, 2034
DpnII	GATC	6 cut(s)	274, 1119, 1708, 1929, 2020, 2032
DraI	TTTAAA	1 cut(s)	517
DraIII	CACNNNGTG	1 cut(s)	1832
DriI	GACNNNNNGTC	1 cut(s)	649
EaeI	YGGCCR	1 cut(s)	1620
Eam1104I	CTCTTC	2 cut(s)	103, 2094
Eam1105I	GACNNNNNGTC	1 cut(s)	649
EarI	CTCTTC	2 cut(s)	103, 2094
EciI	GGCGGA	1 cut(s)	121
Eco105I	TACGTA	1 cut(s)	1212
Eco130I	CCWWGG	3 cut(s)	31, 348, 1623
Eco24I	GRGCYC	1 cut(s)	1761
Eco31I	GGTCTC	1 cut(s)	1622
Eco47I	GGWCC	3 cut(s)	345, 462, 1357
Eco57I	CTGAAG	1 cut(s)	1085
Eco91I	GGTNACC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	1552
EcoO109I	RGGNCCY	3 cut(s)	462, 556, 1387
EcoO65I	GGTNACC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	3 cut(s)	31, 348, 1623
EcoT38I	GRGCYC	1 cut(s)	1761
ErhI	CCWWGG	3 cut(s)	31, 348, 1623
FaeI	CATG	8 cut(s)	35, 352, 470, 914, 1645, 1715, 1810, 2067
FatI	CATG	8 cut(s)	31, 348, 466, 910, 1641, 1711, 1806, 2063
FauNDI	CATATG	1 cut(s)	1264
FbaI	TGATCA	2 cut(s)	1119, 1708
FblI	GTMKAC	3 cut(s)	216, 995, 1214
Fnu4HI	GCNGC	5 cut(s)	135, 138, 410, 525, 1989
FokI	GGATG	5 cut(s)	49, 1289, 1624, 1676, 1714
FriOI	GRGCYC	1 cut(s)	1761
Fsp4HI	GCNGC	5 cut(s)	135, 138, 410, 525, 1989
FspBI	CTAG	5 cut(s)	786, 1475, 1842, 1913, 2131
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	5 cut(s)	135, 138, 410, 525, 1989
GsaI	CCCAGC	1 cut(s)	1248
HaeIII	GGCC	5 cut(s)	341, 356, 558, 1389, 1622
HapII	CCGG	4 cut(s)	342, 1075, 1619, 1724
HgaI	GACGC	1 cut(s)	828
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	8 cut(s)	35, 352, 470, 914, 1645, 1715, 1810, 2067
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	3 cut(s)	892, 1848, 1942
HindII	GTYRAC	3 cut(s)	892, 1848, 1942
HindIII	AAGCTT	3 cut(s)	1067, 1365, 1958
HinfI	GANTC	7 cut(s)	110, 167, 179, 287, 1416, 1615, 2112
HpaI	GTTAAC	2 cut(s)	892, 1942
HpaII	CCGG	4 cut(s)	342, 1075, 1619, 1724
HphI	GGTGA	6 cut(s)	187, 246, 499, 886, 1469, 1818
Hpy166II	GTNNAC	6 cut(s)	217, 892, 996, 1215, 1848, 1942
Hpy188III	TCNNGA	8 cut(s)	85, 272, 541, 671, 1075, 1859, 1927, 1954
Hpy8I	GTNNAC	6 cut(s)	217, 892, 996, 1215, 1848, 1942
Hpy99I	CGWCG	3 cut(s)	320, 338, 647
HpyAV	CCTTC	8 cut(s)	23, 112, 814, 1174, 1286, 1378, 1400, 1558
HpyCH4III	ACNGT	5 cut(s)	587, 1337, 1469, 1658, 1939
HpyCH4IV	ACGT	3 cut(s)	636, 899, 1211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 603, 1099
HpyF3I	CTNAG	6 cut(s)	23, 359, 501, 1041, 1903, 2106
HpySE526I	ACGT	3 cut(s)	636, 899, 1211
Hsp92II	CATG	8 cut(s)	35, 352, 470, 914, 1645, 1715, 1810, 2067
HspAI	GCGC	1 cut(s)	426
Kpn2I	TCCGGA	1 cut(s)	1074
Ksp22I	TGATCA	2 cut(s)	1119, 1708
KspAI	GTTAAC	2 cut(s)	892, 1942
Kzo9I	GATC	6 cut(s)	274, 1119, 1708, 1929, 2020, 2032
LguI	GCTCTTC	1 cut(s)	2094
LmnI	GCTCC	2 cut(s)	1306, 1510
Lsp1109I	GCAGC	2 cut(s)	511, 2000
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	5 cut(s)	786, 1475, 1842, 1913, 2131
MaeII	ACGT	3 cut(s)	636, 899, 1211
MaeIII	GTNAC	5 cut(s)	193, 1417, 1824, 1837, 2038
MalI	GATC	6 cut(s)	276, 1121, 1710, 1931, 2022, 2034
MboI	GATC	6 cut(s)	274, 1119, 1708, 1929, 2020, 2032
MboII	GAAGA	7 cut(s)	90, 243, 412, 1301, 1684, 1984, 2081
MflI	RGATCY	1 cut(s)	1929
MhlI	GDGCHC	4 cut(s)	1446, 1474, 1747, 1761
MluCI	AATT	9 cut(s)	18, 392, 451, 883, 1190, 1249, 1268, 2006, 2124
MlyI	GAGTC	2 cut(s)	104, 1425
MmeI	TCCRAC	4 cut(s)	357, 936, 959, 1016
MroI	TCCGGA	1 cut(s)	1074
MroXI	GAANNNNTTC	4 cut(s)	474, 638, 1194, 1586
MseI	TTAA	8 cut(s)	516, 617, 687, 891, 936, 1380, 1464, 1941
MslI	CAYNNNNRTG	1 cut(s)	1892
MspI	CCGG	4 cut(s)	342, 1075, 1619, 1724
MspR9I	CCNGG	3 cut(s)	343, 554, 1724
MvaI	CCWGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	1007
MwoI	GCNNNNNNNGC	3 cut(s)	55, 603, 1099
NciI	CCSGG	2 cut(s)	343, 1724
NcoI	CCATGG	2 cut(s)	31, 348
NdeI	CATATG	1 cut(s)	1264
NdeII	GATC	6 cut(s)	274, 1119, 1708, 1929, 2020, 2032
NlaIII	CATG	8 cut(s)	35, 352, 470, 914, 1645, 1715, 1810, 2067
NlaIV	GGNNCC	5 cut(s)	346, 464, 1358, 1512, 1931
NmeAIII	GCCGAG	1 cut(s)	1421
NmuCI	GTSAC	4 cut(s)	193, 1417, 1824, 2038
NspI	RCATGY	1 cut(s)	2067
NspV	TTCGAA	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	2094
PcsI	WCGNNNNNNNCGW	2 cut(s)	312, 642
PdmI	GAANNNNTTC	4 cut(s)	474, 638, 1194, 1586
PfeI	GAWTC	5 cut(s)	167, 179, 287, 1615, 2112
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	5 cut(s)	136, 139, 411, 526, 1990
PleI	GAGTC	2 cut(s)	104, 1424
PpsI	GAGTC	2 cut(s)	104, 1424
Ppu21I	YACGTR	1 cut(s)	1212
PpuMI	RGGWCCY	1 cut(s)	462
PsiI	TTATAA	2 cut(s)	1089, 1371
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	552
PspEI	GGTNACC	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	1244
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	5 cut(s)	346, 464, 1358, 1512, 1931
PspPI	GGNCC	6 cut(s)	345, 355, 462, 556, 1357, 1387
PspPPI	RGGWCCY	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	1556
PstNI	CAGNNNCTG	1 cut(s)	1341
PsuI	RGATCY	1 cut(s)	1929
RsaI	GTAC	3 cut(s)	571, 1315, 1655
RsaNI	GTAC	3 cut(s)	570, 1314, 1654
RseI	CAYNNNNRTG	1 cut(s)	1892
SapI	GCTCTTC	1 cut(s)	2094
SaqAI	TTAA	8 cut(s)	516, 617, 687, 891, 936, 1380, 1464, 1941
SatI	GCNGC	5 cut(s)	135, 138, 410, 525, 1989
Sau3AI	GATC	6 cut(s)	274, 1119, 1708, 1929, 2020, 2032
Sau96I	GGNCC	6 cut(s)	345, 355, 462, 556, 1357, 1387
ScaI	AGTACT	1 cut(s)	571
SchI	GAGTC	2 cut(s)	104, 1425
ScrFI	CCNGG	3 cut(s)	343, 554, 1724
SduI	GDGCHC	4 cut(s)	1446, 1474, 1747, 1761
SfaNI	GCATC	1 cut(s)	534
SfcI	CTRYAG	2 cut(s)	1552, 1657
SfuI	TTCGAA	1 cut(s)	16
SinI	GGWCC	3 cut(s)	345, 462, 1357
SmiMI	CAYNNNNRTG	1 cut(s)	1892
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SnaBI	TACGTA	1 cut(s)	1212
Sse9I	AATT	9 cut(s)	18, 392, 451, 883, 1190, 1249, 1268, 2006, 2124
SspI	AATATT	1 cut(s)	1672
SspMI	CTAG	5 cut(s)	786, 1475, 1842, 1913, 2131
StyD4I	CCNGG	3 cut(s)	341, 552, 1722
StyI	CCWWGG	3 cut(s)	31, 348, 1623
TaaI	ACNGT	5 cut(s)	587, 1337, 1469, 1658, 1939
TaiI	ACGT	3 cut(s)	639, 902, 1214
TaqI	TCGA	8 cut(s)	16, 397, 434, 540, 642, 712, 852, 1590
TasI	AATT	9 cut(s)	18, 392, 451, 883, 1190, 1249, 1268, 2006, 2124
TatI	WGTACW	2 cut(s)	569, 1313
TauI	GCSGC	3 cut(s)	137, 140, 412
TfiI	GAWTC	5 cut(s)	167, 179, 287, 1615, 2112
Tru1I	TTAA	8 cut(s)	516, 617, 687, 891, 936, 1380, 1464, 1941
Tru9I	TTAA	8 cut(s)	516, 617, 687, 891, 936, 1380, 1464, 1941
TscAI	CASTG	6 cut(s)	112, 485, 1129, 1451, 1474, 1894
TseFI	GTSAC	4 cut(s)	193, 1417, 1824, 2038
TseI	GCWGC	2 cut(s)	524, 1988
Tsp45I	GTSAC	4 cut(s)	193, 1417, 1824, 2038
TspDTI	ATGAA	7 cut(s)	132, 483, 1193, 1281, 1423, 1515, 1583
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	6 cut(s)	112, 485, 1129, 1451, 1474, 1894
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	3 cut(s)	345, 462, 1357
XagI	CCTNNNNNAGG	1 cut(s)	1552
XapI	RAATTY	4 cut(s)	18, 392, 883, 1249
XceI	RCATGY	1 cut(s)	2067
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XmiI	GTMKAC	3 cut(s)	216, 995, 1214
XmnI	GAANNNNTTC	4 cut(s)	474, 638, 1194, 1586
XspI	CTAG	5 cut(s)	786, 1475, 1842, 1913, 2131
ZrmI	AGTACT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.