Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Hyccin | PF09790 | 79 - 406 | 1.7e-60 | Hyccin |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 780 |
| AccB1I | GGYRCC | 2 cut(s) | 1096, 1177 |
| AccBSI | CCGCTC | 2 cut(s) | 168, 337 |
| AccIII | TCCGGA | 1 cut(s) | 323 |
| AclWI | GGATC | 4 cut(s) | 321, 334, 556, 998 |
| AcsI | RAATTY | 1 cut(s) | 1105 |
| AcyI | GRCGYC | 1 cut(s) | 1097 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 317, 897 |
| AgsI | TTSAA | 1 cut(s) | 1105 |
| AjnI | CCWGG | 2 cut(s) | 681, 1157 |
| AluBI | AGCT | 5 cut(s) | 800, 1054, 1196, 1216, 1301 |
| AluI | AGCT | 5 cut(s) | 800, 1054, 1196, 1216, 1301 |
| Alw21I | GWGCWC | 1 cut(s) | 504 |
| Alw26I | GTCTC | 3 cut(s) | 518, 1211, 1330 |
| AlwI | GGATC | 4 cut(s) | 321, 334, 556, 998 |
| Aor13HI | TCCGGA | 1 cut(s) | 323 |
| AoxI | GGCC | 7 cut(s) | 421, 495, 531, 708, 807, 811, 888 |
| ApeKI | GCWGC | 6 cut(s) | 1060, 1069, 1127, 1238, 1247, 1262 |
| ApoI | RAATTY | 1 cut(s) | 1105 |
| AspLEI | GCGC | 3 cut(s) | 730, 1069, 1099 |
| AspS9I | GGNCC | 7 cut(s) | 4, 532, 568, 708, 771, 807, 812 |
| AsuC2I | CCSGG | 2 cut(s) | 566, 815 |
| AsuHPI | GGTGA | 5 cut(s) | 103, 457, 956, 1042, 1153 |
| AsuII | TTCGAA | 2 cut(s) | 840, 1277 |
| AvaII | GGWCC | 3 cut(s) | 4, 568, 771 |
| BamHI | GGATCC | 1 cut(s) | 326 |
| BanI | GGYRCC | 2 cut(s) | 1096, 1177 |
| BanII | GRGCYC | 1 cut(s) | 681 |
| BbsI | GAAGAC | 1 cut(s) | 617 |
| Bbv12I | GWGCWC | 1 cut(s) | 504 |
| BbvI | GCAGC | 6 cut(s) | 1056, 1072, 1114, 1234, 1249, 1250 |
| BccI | CCATC | 3 cut(s) | 107, 161, 387 |
| BceAI | ACGGC | 7 cut(s) | 272, 281, 482, 556, 674, 1030, 1084 |
| BciT130I | CCWGG | 2 cut(s) | 683, 1159 |
| BcnI | CCSGG | 2 cut(s) | 566, 815 |
| BcoDI | GTCTC | 3 cut(s) | 518, 1211, 1330 |
| BfaI | CTAG | 1 cut(s) | 797 |
| BfmI | CTRYAG | 1 cut(s) | 1248 |
| BfoI | RGCGCY | 2 cut(s) | 1070, 1100 |
| BfuAI | ACCTGC | 1 cut(s) | 780 |
| Bme1390I | CCNGG | 4 cut(s) | 566, 683, 815, 1159 |
| Bme18I | GGWCC | 3 cut(s) | 4, 568, 771 |
| BmgT120I | GGNCC | 7 cut(s) | 4, 532, 568, 708, 771, 807, 812 |
| BmiI | GGNNCC | 5 cut(s) | 322, 328, 794, 1098, 1179 |
| BmrFI | CCNGG | 4 cut(s) | 566, 683, 815, 1159 |
| BmsI | GCATC | 4 cut(s) | 183, 447, 750, 1172 |
| BpiI | GAAGAC | 1 cut(s) | 617 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 140, 172 |
| Bpu14I | TTCGAA | 2 cut(s) | 840, 1277 |
| BpuEI | CTTGAG | 1 cut(s) | 695 |
| BpuMI | CCSGG | 2 cut(s) | 566, 815 |
| BsaHI | GRCGYC | 1 cut(s) | 1097 |
| BsaI | GGTCTC | 2 cut(s) | 518, 1330 |
| BsaJI | CCNNGG | 5 cut(s) | 528, 681, 1046, 1158, 1242 |
| BsaWI | WCCGGW | 1 cut(s) | 323 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 86, 116, 434, 464 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 317, 897 |
| Bse118I | RCCGGY | 5 cut(s) | 419, 485, 809, 890, 1063 |
| Bse1I | ACTGG | 2 cut(s) | 350, 636 |
| Bse3DI | GCAATG | 4 cut(s) | 901, 1003, 1040, 1134 |
| BseAI | TCCGGA | 1 cut(s) | 323 |
| BseBI | CCWGG | 2 cut(s) | 683, 1159 |
| BseDI | CCNNGG | 5 cut(s) | 528, 681, 1046, 1158, 1242 |
| BseGI | GGATG | 2 cut(s) | 174, 438 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 317, 897 |
| BseMI | GCAATG | 4 cut(s) | 901, 1003, 1040, 1134 |
| BseMII | CTCAG | 4 cut(s) | 590, 962, 1124, 1214 |
| BseNI | ACTGG | 2 cut(s) | 350, 636 |
| BseXI | GCAGC | 6 cut(s) | 1056, 1072, 1114, 1234, 1249, 1250 |
| BseYI | CCCAGC | 1 cut(s) | 875 |
| Bsh1285I | CGRYCG | 1 cut(s) | 244 |
| BshFI | GGCC | 7 cut(s) | 423, 497, 533, 710, 809, 813, 890 |
| BshNI | GGYRCC | 2 cut(s) | 1096, 1177 |
| BsiEI | CGRYCG | 1 cut(s) | 244 |
| BsiHKAI | GWGCWC | 1 cut(s) | 504 |
| BsiSI | CCGG | 9 cut(s) | 318, 324, 420, 486, 566, 810, 815, 891, 1064 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 317, 897 |
| BsmAI | GTCTC | 3 cut(s) | 518, 1211, 1330 |
| BsnI | GGCC | 7 cut(s) | 423, 497, 533, 710, 809, 813, 890 |
| Bso31I | GGTCTC | 2 cut(s) | 518, 1330 |
| Bsp119I | TTCGAA | 2 cut(s) | 840, 1277 |
| Bsp1286I | GDGCHC | 2 cut(s) | 504, 681 |
| Bsp13I | TCCGGA | 1 cut(s) | 323 |
| Bsp143I | GATC | 3 cut(s) | 326, 561, 990 |
| BspANI | GGCC | 7 cut(s) | 423, 497, 533, 710, 809, 813, 890 |
| BspCNI | CTCAG | 4 cut(s) | 589, 963, 1123, 1213 |
| BspEI | TCCGGA | 1 cut(s) | 323 |
| BspHI | TCATGA | 1 cut(s) | 1168 |
| BspLI | GGNNCC | 5 cut(s) | 322, 328, 794, 1098, 1179 |
| BspMAI | CTGCAG | 1 cut(s) | 1252 |
| BspMI | ACCTGC | 1 cut(s) | 780 |
| BspPI | GGATC | 4 cut(s) | 321, 334, 556, 998 |
| BspT104I | TTCGAA | 2 cut(s) | 840, 1277 |
| BspT107I | GGYRCC | 2 cut(s) | 1096, 1177 |
| BspTNI | GGTCTC | 2 cut(s) | 518, 1330 |
| BsrBI | CCGCTC | 2 cut(s) | 168, 337 |
| BsrDI | GCAATG | 4 cut(s) | 901, 1003, 1040, 1134 |
| BsrFI | RCCGGY | 5 cut(s) | 419, 485, 809, 890, 1063 |
| BsrI | ACTGG | 2 cut(s) | 350, 636 |
| BssAI | RCCGGY | 5 cut(s) | 419, 485, 809, 890, 1063 |
| BssECI | CCNNGG | 5 cut(s) | 528, 681, 1046, 1158, 1242 |
| BssMI | GATC | 3 cut(s) | 326, 561, 990 |
| BssNI | GRCGYC | 1 cut(s) | 1097 |
| BssT1I | CCWWGG | 2 cut(s) | 528, 1242 |
| Bst2UI | CCWGG | 2 cut(s) | 683, 1159 |
| Bst4CI | ACNGT | 2 cut(s) | 652, 860 |
| BstACI | GRCGYC | 1 cut(s) | 1097 |
| BstBI | TTCGAA | 2 cut(s) | 840, 1277 |
| BstC8I | GCNNGC | 9 cut(s) | 166, 421, 487, 545, 712, 811, 892, 1065, 1185 |
| BstDEI | CTNAG | 5 cut(s) | 576, 971, 1110, 1200, 1302 |
| BstDSI | CCRYGG | 1 cut(s) | 1046 |
| BstF5I | GGATG | 2 cut(s) | 174, 438 |
| BstH2I | RGCGCY | 2 cut(s) | 1070, 1100 |
| BstHHI | GCGC | 3 cut(s) | 730, 1069, 1099 |
| BstKTI | GATC | 3 cut(s) | 329, 564, 993 |
| BstMAI | GTCTC | 3 cut(s) | 518, 1211, 1330 |
| BstMBI | GATC | 3 cut(s) | 326, 561, 990 |
| BstMCI | CGRYCG | 1 cut(s) | 244 |
| BstNI | CCWGG | 2 cut(s) | 683, 1159 |
| BstSCI | CCNGG | 4 cut(s) | 564, 681, 813, 1157 |
| BstSFI | CTRYAG | 1 cut(s) | 1248 |
| BstV1I | GCAGC | 6 cut(s) | 1056, 1072, 1114, 1234, 1249, 1250 |
| BstV2I | GAAGAC | 1 cut(s) | 617 |
| BstX2I | RGATCY | 1 cut(s) | 326 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 653, 1047 |
| BstYI | RGATCY | 1 cut(s) | 326 |
| BsuRI | GGCC | 7 cut(s) | 423, 497, 533, 710, 809, 813, 890 |
| BtgI | CCRYGG | 1 cut(s) | 1046 |
| BtsCI | GGATG | 2 cut(s) | 174, 438 |
| BtsI | GCAGTG | 1 cut(s) | 1257 |
| BtsIMutI | CAGTG | 2 cut(s) | 865, 1257 |
| BveI | ACCTGC | 1 cut(s) | 780 |
| Cac8I | GCNNGC | 9 cut(s) | 166, 421, 487, 545, 712, 811, 892, 1065, 1185 |
| CciI | TCATGA | 1 cut(s) | 1168 |
| CfoI | GCGC | 3 cut(s) | 730, 1069, 1099 |
| Cfr10I | RCCGGY | 5 cut(s) | 419, 485, 809, 890, 1063 |
| Cfr13I | GGNCC | 7 cut(s) | 4, 532, 568, 708, 771, 807, 812 |
| CseI | GACGC | 1 cut(s) | 1133 |
| CviAII | CATG | 3 cut(s) | 141, 1010, 1169 |
| DdeI | CTNAG | 5 cut(s) | 576, 971, 1110, 1200, 1302 |
| DinI | GGCGCC | 1 cut(s) | 1098 |
| DpnI | GATC | 3 cut(s) | 328, 563, 992 |
| DpnII | GATC | 3 cut(s) | 326, 561, 990 |
| EciI | GGCGGA | 4 cut(s) | 34, 283, 295, 968 |
| Eco130I | CCWWGG | 2 cut(s) | 528, 1242 |
| Eco24I | GRGCYC | 1 cut(s) | 681 |
| Eco31I | GGTCTC | 2 cut(s) | 518, 1330 |
| Eco47I | GGWCC | 3 cut(s) | 4, 568, 771 |
| EcoRI | GAATTC | 1 cut(s) | 1105 |
| EcoRII | CCWGG | 2 cut(s) | 681, 1157 |
| EcoT14I | CCWWGG | 2 cut(s) | 528, 1242 |
| EcoT38I | GRGCYC | 1 cut(s) | 681 |
| EgeI | GGCGCC | 1 cut(s) | 1098 |
| EheI | GGCGCC | 1 cut(s) | 1098 |
| ErhI | CCWWGG | 2 cut(s) | 528, 1242 |
| FaeI | CATG | 3 cut(s) | 144, 1013, 1172 |
| FaiI | YATR | 4 cut(s) | 142, 1011, 1155, 1170 |
| FatI | CATG | 3 cut(s) | 140, 1009, 1168 |
| FauI | CCCGC | 6 cut(s) | 98, 173, 179, 256, 342, 443 |
| FokI | GGATG | 2 cut(s) | 161, 425 |
| FriOI | GRGCYC | 1 cut(s) | 681 |
| FseI | GGCCGGCC | 1 cut(s) | 813 |
| FspBI | CTAG | 1 cut(s) | 797 |
| GlaI | GCGC | 3 cut(s) | 729, 1068, 1098 |
| GsaI | CCCAGC | 1 cut(s) | 879 |
| HaeII | RGCGCY | 2 cut(s) | 1070, 1100 |
| HaeIII | GGCC | 7 cut(s) | 423, 497, 533, 710, 809, 813, 890 |
| HapII | CCGG | 9 cut(s) | 318, 324, 420, 486, 566, 810, 815, 891, 1064 |
| HgaI | GACGC | 1 cut(s) | 1133 |
| HhaI | GCGC | 3 cut(s) | 730, 1069, 1099 |
| Hin1I | GRCGYC | 1 cut(s) | 1097 |
| Hin1II | CATG | 3 cut(s) | 144, 1013, 1172 |
| Hin6I | GCGC | 3 cut(s) | 728, 1067, 1097 |
| HinP1I | GCGC | 3 cut(s) | 728, 1067, 1097 |
| HincII | GTYRAC | 3 cut(s) | 699, 968, 1285 |
| HindII | GTYRAC | 3 cut(s) | 699, 968, 1285 |
| HinfI | GANTC | 9 cut(s) | 149, 236, 387, 458, 734, 842, 1019, 1036, 1204 |
| HpaI | GTTAAC | 1 cut(s) | 1285 |
| HpaII | CCGG | 9 cut(s) | 318, 324, 420, 486, 566, 810, 815, 891, 1064 |
| HphI | GGTGA | 5 cut(s) | 103, 457, 956, 1042, 1153 |
| Hpy166II | GTNNAC | 3 cut(s) | 699, 968, 1285 |
| Hpy188I | TCNGA | 5 cut(s) | 241, 331, 373, 457, 1203 |
| Hpy188III | TCNNGA | 3 cut(s) | 324, 1112, 1169 |
| Hpy8I | GTNNAC | 3 cut(s) | 699, 968, 1285 |
| Hpy99I | CGWCG | 3 cut(s) | 125, 128, 395 |
| HpyAV | CCTTC | 3 cut(s) | 213, 370, 412 |
| HpyCH4III | ACNGT | 2 cut(s) | 652, 860 |
| HpyCH4V | TGCA | 6 cut(s) | 136, 342, 714, 789, 1060, 1250 |
| HpyF3I | CTNAG | 5 cut(s) | 576, 971, 1110, 1200, 1302 |
| Hsp92I | GRCGYC | 1 cut(s) | 1097 |
| Hsp92II | CATG | 3 cut(s) | 144, 1013, 1172 |
| HspAI | GCGC | 3 cut(s) | 728, 1067, 1097 |
| KasI | GGCGCC | 1 cut(s) | 1096 |
| Kpn2I | TCCGGA | 1 cut(s) | 323 |
| KroI | GCCGGC | 5 cut(s) | 419, 485, 809, 890, 1063 |
| KroNI | GCCGGC | 5 cut(s) | 421, 487, 811, 892, 1065 |
| KspAI | GTTAAC | 1 cut(s) | 1285 |
| Kzo9I | GATC | 3 cut(s) | 326, 561, 990 |
| LmnI | GCTCC | 4 cut(s) | 173, 326, 507, 1051 |
| Lsp1109I | GCAGC | 6 cut(s) | 1056, 1072, 1114, 1234, 1249, 1250 |
| LweI | GCATC | 4 cut(s) | 183, 447, 750, 1172 |
| MaeI | CTAG | 1 cut(s) | 797 |
| MalI | GATC | 3 cut(s) | 328, 563, 992 |
| MbiI | CCGCTC | 2 cut(s) | 168, 337 |
| MboI | GATC | 3 cut(s) | 326, 561, 990 |
| MboII | GAAGA | 4 cut(s) | 622, 968, 1045, 1266 |
| MflI | RGATCY | 1 cut(s) | 326 |
| MhlI | GDGCHC | 2 cut(s) | 504, 681 |
| MluCI | AATT | 5 cut(s) | 631, 836, 975, 1105, 1267 |
| Mly113I | GGCGCC | 1 cut(s) | 1097 |
| MlyI | GAGTC | 6 cut(s) | 158, 230, 381, 452, 1013, 1213 |
| MmeI | TCCRAC | 4 cut(s) | 264, 354, 396, 700 |
| MroI | TCCGGA | 1 cut(s) | 323 |
| MroNI | GCCGGC | 5 cut(s) | 419, 485, 809, 890, 1063 |
| MseI | TTAA | 2 cut(s) | 1119, 1284 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1045, 1139 |
| MspA1I | CMGCKG | 1 cut(s) | 832 |
| MspI | CCGG | 9 cut(s) | 318, 324, 420, 486, 566, 810, 815, 891, 1064 |
| MspR9I | CCNGG | 4 cut(s) | 566, 683, 815, 1159 |
| MvaI | CCWGG | 2 cut(s) | 683, 1159 |
| NaeI | GCCGGC | 5 cut(s) | 421, 487, 811, 892, 1065 |
| NarI | GGCGCC | 1 cut(s) | 1097 |
| NciI | CCSGG | 2 cut(s) | 566, 815 |
| NdeII | GATC | 3 cut(s) | 326, 561, 990 |
| NgoMIV | GCCGGC | 5 cut(s) | 419, 485, 809, 890, 1063 |
| NlaIII | CATG | 3 cut(s) | 144, 1013, 1172 |
| NlaIV | GGNNCC | 5 cut(s) | 322, 328, 794, 1098, 1179 |
| NmeAIII | GCCGAG | 2 cut(s) | 547, 1317 |
| NspV | TTCGAA | 2 cut(s) | 840, 1277 |
| PagI | TCATGA | 1 cut(s) | 1168 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 237 |
| PdiI | GCCGGC | 5 cut(s) | 421, 487, 811, 892, 1065 |
| PfeI | GAWTC | 3 cut(s) | 734, 842, 1036 |
| PfoI | TCCNGGA | 1 cut(s) | 564 |
| PleI | GAGTC | 6 cut(s) | 157, 230, 381, 452, 1013, 1212 |
| PluTI | GGCGCC | 1 cut(s) | 1100 |
| PpsI | GAGTC | 6 cut(s) | 157, 230, 381, 452, 1013, 1212 |
| Psp6I | CCWGG | 2 cut(s) | 681, 1157 |
| PspFI | CCCAGC | 1 cut(s) | 875 |
| PspGI | CCWGG | 2 cut(s) | 681, 1157 |
| PspN4I | GGNNCC | 5 cut(s) | 322, 328, 794, 1098, 1179 |
| PspPI | GGNCC | 7 cut(s) | 4, 532, 568, 708, 771, 807, 812 |
| PstI | CTGCAG | 1 cut(s) | 1252 |
| PsuI | RGATCY | 1 cut(s) | 326 |
| RigI | GGCCGGCC | 1 cut(s) | 813 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1045, 1139 |
| SaqAI | TTAA | 2 cut(s) | 1119, 1284 |
| Sau3AI | GATC | 3 cut(s) | 326, 561, 990 |
| Sau96I | GGNCC | 7 cut(s) | 4, 532, 568, 708, 771, 807, 812 |
| SchI | GAGTC | 6 cut(s) | 158, 230, 381, 452, 1013, 1213 |
| ScrFI | CCNGG | 4 cut(s) | 566, 683, 815, 1159 |
| SduI | GDGCHC | 2 cut(s) | 504, 681 |
| SfaNI | GCATC | 4 cut(s) | 183, 447, 750, 1172 |
| SfcI | CTRYAG | 1 cut(s) | 1248 |
| SfoI | GGCGCC | 1 cut(s) | 1098 |
| SfuI | TTCGAA | 2 cut(s) | 840, 1277 |
| SinI | GGWCC | 3 cut(s) | 4, 568, 771 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1045, 1139 |
| SmlI | CTYRAG | 1 cut(s) | 674 |
| SmoI | CTYRAG | 1 cut(s) | 674 |
| Sse9I | AATT | 5 cut(s) | 631, 836, 975, 1105, 1267 |
| SspDI | GGCGCC | 1 cut(s) | 1096 |
| SspI | AATATT | 1 cut(s) | 1077 |
| SspMI | CTAG | 1 cut(s) | 797 |
| StyD4I | CCNGG | 4 cut(s) | 564, 681, 813, 1157 |
| StyI | CCWWGG | 2 cut(s) | 528, 1242 |
| TaaI | ACNGT | 2 cut(s) | 652, 860 |
| TaqI | TCGA | 6 cut(s) | 198, 273, 560, 601, 840, 1277 |
| TasI | AATT | 5 cut(s) | 631, 836, 975, 1105, 1267 |
| TauI | GCSGC | 6 cut(s) | 287, 521, 670, 673, 835, 1183 |
| TfiI | GAWTC | 3 cut(s) | 734, 842, 1036 |
| Tru1I | TTAA | 2 cut(s) | 1119, 1284 |
| Tru9I | TTAA | 2 cut(s) | 1119, 1284 |
| TscAI | CASTG | 2 cut(s) | 865, 1257 |
| TseI | GCWGC | 6 cut(s) | 1060, 1069, 1127, 1238, 1247, 1262 |
| TspDTI | ATGAA | 1 cut(s) | 1260 |
| TspGWI | ACGGA | 1 cut(s) | 835 |
| TspRI | CASTG | 2 cut(s) | 865, 1257 |
| VpaK11BI | GGWCC | 3 cut(s) | 4, 568, 771 |
| XapI | RAATTY | 1 cut(s) | 1105 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 138, 1249 |
| XspI | CTAG | 1 cut(s) | 797 |