Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 240 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 674 |
| AciI | CCGC | 2 cut(s) | 125, 797 |
| AcsI | RAATTY | 1 cut(s) | 84 |
| AcuI | CTGAAG | 2 cut(s) | 63, 173 |
| AfaI | GTAC | 5 cut(s) | 70, 116, 218, 625, 633 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 674 |
| AgsI | TTSAA | 7 cut(s) | 323, 344, 350, 464, 537, 596, 603 |
| AjnI | CCWGG | 3 cut(s) | 120, 619, 735 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 271, 303 |
| AluBI | AGCT | 6 cut(s) | 287, 412, 581, 599, 681, 727 |
| AluI | AGCT | 6 cut(s) | 287, 412, 581, 599, 681, 727 |
| Alw21I | GWGCWC | 1 cut(s) | 713 |
| Alw44I | GTGCAC | 1 cut(s) | 709 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 674 |
| AoxI | GGCC | 2 cut(s) | 447, 659 |
| ApaLI | GTGCAC | 1 cut(s) | 709 |
| ApeKI | GCWGC | 1 cut(s) | 702 |
| ApoI | RAATTY | 1 cut(s) | 84 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 186 |
| AspS9I | GGNCC | 1 cut(s) | 448 |
| AsuHPI | GGTGA | 2 cut(s) | 94, 710 |
| BaeGI | GKGCMC | 1 cut(s) | 713 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 615, 648 |
| BanI | GGYRCC | 1 cut(s) | 240 |
| BanII | GRGCYC | 1 cut(s) | 804 |
| BbsI | GAAGAC | 1 cut(s) | 137 |
| Bbv12I | GWGCWC | 1 cut(s) | 713 |
| BbvI | GCAGC | 1 cut(s) | 714 |
| BccI | CCATC | 1 cut(s) | 210 |
| BciT130I | CCWGG | 3 cut(s) | 122, 621, 737 |
| BclI | TGATCA | 1 cut(s) | 313 |
| BfaI | CTAG | 1 cut(s) | 384 |
| BfmI | CTRYAG | 1 cut(s) | 376 |
| BglII | AGATCT | 1 cut(s) | 386 |
| BisI | GCNGC | 1 cut(s) | 703 |
| BlsI | GCNGC | 1 cut(s) | 704 |
| BmcAI | AGTACT | 1 cut(s) | 116 |
| Bme1390I | CCNGG | 3 cut(s) | 122, 621, 737 |
| BmgT120I | GGNCC | 1 cut(s) | 448 |
| BmiI | GGNNCC | 2 cut(s) | 242, 801 |
| BmrFI | CCNGG | 3 cut(s) | 122, 621, 737 |
| BmsI | GCATC | 2 cut(s) | 215, 661 |
| BpiI | GAAGAC | 1 cut(s) | 137 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 646, 678 |
| BpuEI | CTTGAG | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 1 cut(s) | 735 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 674 |
| BseBI | CCWGG | 3 cut(s) | 122, 621, 737 |
| BseDI | CCNNGG | 1 cut(s) | 735 |
| BseGI | GGATG | 2 cut(s) | 230, 664 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 674 |
| BseMII | CTCAG | 2 cut(s) | 126, 234 |
| BseSI | GKGCMC | 1 cut(s) | 713 |
| BseXI | GCAGC | 1 cut(s) | 714 |
| BshFI | GGCC | 2 cut(s) | 449, 661 |
| BshNI | GGYRCC | 1 cut(s) | 240 |
| BsiHKAI | GWGCWC | 1 cut(s) | 713 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 674 |
| BsmI | GAATGC | 1 cut(s) | 772 |
| BsnI | GGCC | 2 cut(s) | 449, 661 |
| Bsp1286I | GDGCHC | 2 cut(s) | 713, 804 |
| Bsp143I | GATC | 3 cut(s) | 297, 313, 386 |
| BspACI | CCGC | 2 cut(s) | 125, 797 |
| BspANI | GGCC | 2 cut(s) | 449, 661 |
| BspCNI | CTCAG | 2 cut(s) | 127, 233 |
| BspHI | TCATGA | 1 cut(s) | 360 |
| BspLI | GGNNCC | 2 cut(s) | 242, 801 |
| BspQI | GCTCTTC | 1 cut(s) | 345 |
| BspT107I | GGYRCC | 1 cut(s) | 240 |
| BssECI | CCNNGG | 1 cut(s) | 735 |
| BssMI | GATC | 3 cut(s) | 297, 313, 386 |
| Bst2UI | CCWGG | 3 cut(s) | 122, 621, 737 |
| Bst4CI | ACNGT | 1 cut(s) | 68 |
| Bst6I | CTCTTC | 2 cut(s) | 345, 597 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 170, 708, 787 |
| BstC8I | GCNNGC | 1 cut(s) | 373 |
| BstDEI | CTNAG | 4 cut(s) | 135, 220, 570, 682 |
| BstF5I | GGATG | 2 cut(s) | 230, 664 |
| BstKTI | GATC | 3 cut(s) | 300, 316, 389 |
| BstMBI | GATC | 3 cut(s) | 297, 313, 386 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 170, 708, 787 |
| BstNI | CCWGG | 3 cut(s) | 122, 621, 737 |
| BstNSI | RCATGY | 1 cut(s) | 790 |
| BstSCI | CCNGG | 3 cut(s) | 120, 619, 735 |
| BstSFI | CTRYAG | 1 cut(s) | 376 |
| BstSLI | GKGCMC | 1 cut(s) | 713 |
| BstV1I | GCAGC | 1 cut(s) | 714 |
| BstV2I | GAAGAC | 1 cut(s) | 137 |
| BstX2I | RGATCY | 1 cut(s) | 386 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 620 |
| BstYI | RGATCY | 1 cut(s) | 386 |
| BsuRI | GGCC | 2 cut(s) | 449, 661 |
| BtgZI | GCGATG | 1 cut(s) | 525 |
| BtsCI | GGATG | 2 cut(s) | 230, 664 |
| Cac8I | GCNNGC | 1 cut(s) | 373 |
| CaiI | CAGNNNCTG | 1 cut(s) | 674 |
| CciI | TCATGA | 1 cut(s) | 360 |
| Cfr13I | GGNCC | 1 cut(s) | 448 |
| CsiI | ACCWGGT | 1 cut(s) | 619 |
| Csp6I | GTAC | 5 cut(s) | 69, 115, 217, 624, 632 |
| CviAII | CATG | 2 cut(s) | 361, 787 |
| CviJI | RGCY | 9 cut(s) | 287, 412, 449, 581, 599, 661, 681, 727, 802 |
| CviKI_1 | RGCY | 9 cut(s) | 287, 412, 449, 581, 599, 661, 681, 727, 802 |
| CviQI | GTAC | 5 cut(s) | 69, 115, 217, 624, 632 |
| DdeI | CTNAG | 4 cut(s) | 135, 220, 570, 682 |
| DpnI | GATC | 3 cut(s) | 299, 315, 388 |
| DpnII | GATC | 3 cut(s) | 297, 313, 386 |
| Eam1104I | CTCTTC | 2 cut(s) | 345, 597 |
| EarI | CTCTTC | 2 cut(s) | 345, 597 |
| Eco24I | GRGCYC | 1 cut(s) | 804 |
| Eco57I | CTGAAG | 2 cut(s) | 63, 173 |
| EcoRI | GAATTC | 1 cut(s) | 84 |
| EcoRII | CCWGG | 3 cut(s) | 120, 619, 735 |
| EcoT38I | GRGCYC | 1 cut(s) | 804 |
| FaeI | CATG | 2 cut(s) | 364, 790 |
| FaiI | YATR | 4 cut(s) | 237, 362, 484, 788 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 774, 806 |
| FatI | CATG | 2 cut(s) | 360, 786 |
| FauI | CCCGC | 1 cut(s) | 118 |
| FbaI | TGATCA | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 1 cut(s) | 703 |
| FokI | GGATG | 2 cut(s) | 237, 651 |
| FriOI | GRGCYC | 1 cut(s) | 804 |
| Fsp4HI | GCNGC | 1 cut(s) | 703 |
| FspBI | CTAG | 1 cut(s) | 384 |
| GluI | GCNGC | 1 cut(s) | 703 |
| HaeIII | GGCC | 2 cut(s) | 449, 661 |
| Hin1II | CATG | 2 cut(s) | 364, 790 |
| HindIII | AAGCTT | 4 cut(s) | 285, 597, 679, 725 |
| HinfI | GANTC | 5 cut(s) | 17, 37, 58, 561, 584 |
| HphI | GGTGA | 2 cut(s) | 94, 710 |
| Hpy166II | GTNNAC | 1 cut(s) | 711 |
| Hpy188I | TCNGA | 3 cut(s) | 34, 97, 638 |
| Hpy188III | TCNNGA | 7 cut(s) | 41, 191, 222, 361, 384, 613, 668 |
| Hpy8I | GTNNAC | 1 cut(s) | 711 |
| HpyAV | CCTTC | 3 cut(s) | 269, 551, 816 |
| HpyCH4III | ACNGT | 1 cut(s) | 68 |
| HpyCH4V | TGCA | 5 cut(s) | 164, 435, 711, 770, 781 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 170, 708, 787 |
| HpyF3I | CTNAG | 4 cut(s) | 135, 220, 570, 682 |
| Hsp92II | CATG | 2 cut(s) | 364, 790 |
| Ksp22I | TGATCA | 1 cut(s) | 313 |
| Kzo9I | GATC | 3 cut(s) | 297, 313, 386 |
| LguI | GCTCTTC | 1 cut(s) | 345 |
| LmnI | GCTCC | 1 cut(s) | 799 |
| Lsp1109I | GCAGC | 1 cut(s) | 714 |
| LweI | GCATC | 2 cut(s) | 215, 661 |
| MabI | ACCWGGT | 1 cut(s) | 619 |
| MaeI | CTAG | 1 cut(s) | 384 |
| MaeIII | GTNAC | 4 cut(s) | 100, 565, 688, 836 |
| MalI | GATC | 3 cut(s) | 299, 315, 388 |
| MboI | GATC | 3 cut(s) | 297, 313, 386 |
| MboII | GAAGA | 6 cut(s) | 137, 362, 376, 579, 584, 587 |
| MfeI | CAATTG | 1 cut(s) | 815 |
| MflI | RGATCY | 1 cut(s) | 386 |
| MhlI | GDGCHC | 2 cut(s) | 713, 804 |
| MluCI | AATT | 6 cut(s) | 28, 84, 345, 356, 423, 815 |
| MlyI | GAGTC | 2 cut(s) | 11, 52 |
| MmeI | TCCRAC | 1 cut(s) | 668 |
| MnlI | CCTC | 3 cut(s) | 178, 265, 672 |
| MroXI | GAANNNNTTC | 1 cut(s) | 186 |
| MseI | TTAA | 2 cut(s) | 111, 131 |
| MslI | CAYNNNNRTG | 1 cut(s) | 669 |
| MspR9I | CCNGG | 3 cut(s) | 122, 621, 737 |
| MunI | CAATTG | 1 cut(s) | 815 |
| Mva1269I | GAATGC | 1 cut(s) | 772 |
| MvaI | CCWGG | 3 cut(s) | 122, 621, 737 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 170, 708, 787 |
| NdeII | GATC | 3 cut(s) | 297, 313, 386 |
| NlaIII | CATG | 2 cut(s) | 364, 790 |
| NlaIV | GGNNCC | 2 cut(s) | 242, 801 |
| NmuCI | GTSAC | 2 cut(s) | 100, 836 |
| NspI | RCATGY | 1 cut(s) | 790 |
| PagI | TCATGA | 1 cut(s) | 360 |
| PciSI | GCTCTTC | 1 cut(s) | 345 |
| PctI | GAATGC | 1 cut(s) | 772 |
| PdmI | GAANNNNTTC | 1 cut(s) | 186 |
| PfeI | GAWTC | 3 cut(s) | 37, 561, 584 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 674 |
| PkrI | GCNGC | 1 cut(s) | 704 |
| PleI | GAGTC | 2 cut(s) | 11, 52 |
| PpsI | GAGTC | 2 cut(s) | 11, 52 |
| Psp6I | CCWGG | 3 cut(s) | 120, 619, 735 |
| PspGI | CCWGG | 3 cut(s) | 120, 619, 735 |
| PspN4I | GGNNCC | 2 cut(s) | 242, 801 |
| PspPI | GGNCC | 1 cut(s) | 448 |
| PstNI | CAGNNNCTG | 1 cut(s) | 674 |
| PsuI | RGATCY | 1 cut(s) | 386 |
| RsaI | GTAC | 5 cut(s) | 70, 116, 218, 625, 633 |
| RsaNI | GTAC | 5 cut(s) | 69, 115, 217, 624, 632 |
| RseI | CAYNNNNRTG | 1 cut(s) | 669 |
| SapI | GCTCTTC | 1 cut(s) | 345 |
| SaqAI | TTAA | 2 cut(s) | 111, 131 |
| SatI | GCNGC | 1 cut(s) | 703 |
| Sau3AI | GATC | 3 cut(s) | 297, 313, 386 |
| Sau96I | GGNCC | 1 cut(s) | 448 |
| ScaI | AGTACT | 1 cut(s) | 116 |
| SchI | GAGTC | 2 cut(s) | 11, 52 |
| ScrFI | CCNGG | 3 cut(s) | 122, 621, 737 |
| SduI | GDGCHC | 2 cut(s) | 713, 804 |
| SexAI | ACCWGGT | 1 cut(s) | 619 |
| SfaNI | GCATC | 2 cut(s) | 215, 661 |
| SfcI | CTRYAG | 1 cut(s) | 376 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 669 |
| SmlI | CTYRAG | 1 cut(s) | 152 |
| SmoI | CTYRAG | 1 cut(s) | 152 |
| Sse9I | AATT | 6 cut(s) | 28, 84, 345, 356, 423, 815 |
| SsiI | CCGC | 2 cut(s) | 125, 797 |
| SspI | AATATT | 1 cut(s) | 745 |
| SspMI | CTAG | 1 cut(s) | 384 |
| StyD4I | CCNGG | 3 cut(s) | 120, 619, 735 |
| TaaI | ACNGT | 1 cut(s) | 68 |
| TaqI | TCGA | 1 cut(s) | 56 |
| TasI | AATT | 6 cut(s) | 28, 84, 345, 356, 423, 815 |
| TatI | WGTACW | 4 cut(s) | 68, 114, 216, 631 |
| TfiI | GAWTC | 3 cut(s) | 37, 561, 584 |
| Tru1I | TTAA | 2 cut(s) | 111, 131 |
| Tru9I | TTAA | 2 cut(s) | 111, 131 |
| TseFI | GTSAC | 2 cut(s) | 100, 836 |
| TseI | GCWGC | 1 cut(s) | 702 |
| Tsp45I | GTSAC | 2 cut(s) | 100, 836 |
| TspDTI | ATGAA | 3 cut(s) | 195, 349, 377 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 674 |
| VneI | GTGCAC | 1 cut(s) | 709 |
| XapI | RAATTY | 1 cut(s) | 84 |
| XbaI | TCTAGA | 1 cut(s) | 383 |
| XceI | RCATGY | 1 cut(s) | 790 |
| XmnI | GAANNNNTTC | 1 cut(s) | 186 |
| XspI | CTAG | 1 cut(s) | 384 |
| ZrmI | AGTACT | 1 cut(s) | 116 |