Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

46007960 .. 46011236

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0362700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTGCTTAGCGCCTCCACCTTCATCGCCATATGCATCGCCGCTGGATCCAGTGATCGACTCATCCAGAAGGCCATTCGGTCGCCTCCCCTCTACAACCAAGCGCCGATCAATAGAGATTGTCGATCAAGATCCTGCCTTGGCTCTGCAGTTGAGCACCGAGCAGCCGTGCAAACCACAATCTGGCACCAAATCTGATCAGCGCCAATACCAAGATTCCGCCGTTTATCCACTTCTAACGAGAACAAAGTTTGGAATTCAGCCACACAACCACTCAGATCAAGATCAAAAAAAGCAAAAGAAGAGAAAAGAAGAATCGAAGAGAGGGGAAGATCTTGCCGAGAATAGACCGGTTGGAAGGCATAATGATCGGGGTTGGGATTGGGTGGCTTACATCAAGATCAACAAAAGCGAAAGAAGAGAGCAGAGAGAAAAGAGGAATAGAAGAGACGAAAGCAGAAGATCTGTGAGCTTTGGAAAGAAGAGAGAAGAAAGAAAAGACCGGTTGCAAGGTTCAATTACTTACGAGGACTATGTTGCCTGTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

183

Amino Acids

21.33

Weight (kDa)

9.78

Isoelectric Point (pI)

96.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	182
AciI	CCGC	2 cut(s)	41, 219
AclWI	GGATC	3 cut(s)	41, 54, 125
AcsI	RAATTY	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgeI	ACCGGT	2 cut(s)	349, 501
AgsI	TTSAA	1 cut(s)	516
AluBI	AGCT	1 cut(s)	471
AluI	AGCT	1 cut(s)	471
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	441
AlwI	GGATC	3 cut(s)	41, 54, 125
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	255
AsiGI	ACCGGT	2 cut(s)	349, 501
AspLEI	GCGC	3 cut(s)	13, 105, 204
BamHI	GGATCC	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	175
BceAI	ACGGC	2 cut(s)	151, 206
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	146
BfoI	RGCGCY	3 cut(s)	14, 106, 205
BglII	AGATCT	2 cut(s)	331, 461
BisI	GCNGC	2 cut(s)	41, 164
BlpI	GCTNAGC	1 cut(s)	7
BlsI	GCNGC	2 cut(s)	42, 165
BmiI	GGNNCC	2 cut(s)	48, 187
BmsI	GCATC	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	7
BsaBI	GATNNNNATC	2 cut(s)	129, 282
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	2 cut(s)	349, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	2 cut(s)	349, 501
Bse1I	ACTGG	1 cut(s)	50
Bse8I	GATNNNNATC	2 cut(s)	129, 282
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	1 cut(s)	62
BseJI	GATNNNNATC	2 cut(s)	129, 282
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	73
BshNI	GGYRCC	1 cut(s)	185
BshTI	ACCGGT	2 cut(s)	349, 501
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	350, 502
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	441
BsmBI	CGTCTC	1 cut(s)	441
BsnI	GGCC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp1720I	GCTNAGC	1 cut(s)	7
BspACI	CCGC	2 cut(s)	41, 219
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	1 cut(s)	287
BspLI	GGNNCC	2 cut(s)	48, 187
BspMAI	CTGCAG	1 cut(s)	150
BspPI	GGATC	3 cut(s)	41, 54, 125
BspT107I	GGYRCC	1 cut(s)	185
BsrFI	RCCGGY	2 cut(s)	349, 501
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	2 cut(s)	349, 501
BssECI	CCNNGG	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	138
Bst6I	CTCTTC	5 cut(s)	296, 314, 412, 439, 476
BstDEI	CTNAG	2 cut(s)	7, 274
BstF5I	GGATG	1 cut(s)	62
BstH2I	RGCGCY	3 cut(s)	14, 106, 205
BstHHI	GCGC	3 cut(s)	13, 105, 204
BstMAI	GTCTC	1 cut(s)	441
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	4 cut(s)	46, 130, 331, 461
BstYI	RGATCY	4 cut(s)	46, 130, 331, 461
BsuRI	GGCC	1 cut(s)	73
BtgZI	GCGATG	2 cut(s)	9, 21
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	57
CfoI	GCGC	3 cut(s)	13, 105, 204
Cfr10I	RCCGGY	2 cut(s)	349, 501
CspAI	ACCGGT	2 cut(s)	349, 501
CviJI	RGCY	6 cut(s)	73, 143, 166, 262, 389, 471
CviKI_1	RGCY	6 cut(s)	73, 143, 166, 262, 389, 471
DdeI	CTNAG	2 cut(s)	7, 274
Eam1104I	CTCTTC	5 cut(s)	296, 314, 412, 439, 476
EarI	CTCTTC	5 cut(s)	296, 314, 412, 439, 476
EciI	GGCGGA	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	441
FaiI	YATR	4 cut(s)	31, 33, 363, 534
FauNDI	CATATG	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	2 cut(s)	41, 164
FokI	GGATG	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	41, 164
GlaI	GCGC	3 cut(s)	12, 104, 203
GluI	GCNGC	2 cut(s)	41, 164
HaeII	RGCGCY	3 cut(s)	14, 106, 205
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	2 cut(s)	350, 502
HhaI	GCGC	3 cut(s)	13, 105, 204
Hin6I	GCGC	3 cut(s)	11, 103, 202
HinP1I	GCGC	3 cut(s)	11, 103, 202
HinfI	GANTC	3 cut(s)	59, 215, 314
HpaII	CCGG	2 cut(s)	350, 502
Hpy188I	TCNGA	2 cut(s)	196, 277
Hpy188III	TCNNGA	4 cut(s)	66, 128, 281, 397
HpyAV	CCTTC	3 cut(s)	30, 63, 351
HpyCH4V	TGCA	4 cut(s)	35, 148, 171, 508
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	2 cut(s)	7, 274
HspAI	GCGC	3 cut(s)	11, 103, 202
Ksp22I	TGATCA	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	29, 63, 79, 147, 168, 363, 515
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	44
MboII	GAAGA	9 cut(s)	313, 323, 331, 341, 429, 456, 471, 493, 500
MflI	RGATCY	4 cut(s)	46, 130, 331, 461
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	2 cut(s)	255, 516
MlyI	GAGTC	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	334
MnlI	CCTC	6 cut(s)	24, 95, 100, 317, 429, 520
Mph1103I	ATGCAT	1 cut(s)	37
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	2 cut(s)	350, 502
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeI	CATATG	1 cut(s)	31
NlaIV	GGNNCC	2 cut(s)	48, 187
NmeAIII	GCCGAG	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	215, 314
PflMI	CCANNNNNTGG	1 cut(s)	182
PinAI	ACCGGT	2 cut(s)	349, 501
PkrI	GCNGC	2 cut(s)	42, 165
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PspN4I	GGNNCC	2 cut(s)	48, 187
PstI	CTGCAG	1 cut(s)	150
PsuI	RGATCY	4 cut(s)	46, 130, 331, 461
SatI	GCNGC	2 cut(s)	41, 164
SchI	GAGTC	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	3 cut(s)	22, 473, 514
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	255, 516
SsiI	CCGC	2 cut(s)	41, 219
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	3 cut(s)	57, 123, 317
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	2 cut(s)	255, 516
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	2 cut(s)	215, 314
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	12
TspRI	CASTG	1 cut(s)	57
Van91I	CCANNNNNTGG	1 cut(s)	182
XapI	RAATTY	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.