Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

15570351 .. 15572968

Gene Structure 2618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAGTTCTTCGATTTCACGAACGCAGCAACCTGCAAGGCTGTAACCAACAACCCATCTCCTGCATGTCTCCAAGCTCCGCCTCCAGCCTTTCAAGCCCCAGCGGCCACCACCGAACTCAGGGTTGGAGACTTGGAGCACTCCCGAGTCCCGAACACGGAACACAACGAGCAAGGCTGTAACCAGCAACCAGCATATCGTTTGATTCAGTGTGAGGCAGATGTGTATCTTTTCGATGGTTGCATTACACCGTGGAAAGTCCCAAATGGGAAAGACCTCCTTTTTGTGAGACCTGATGCTGTGTTTGATGGGAAGAAACTGATCAGGAATTTGATGGGGTATATGGACCAGTATGGCACTGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

122

Amino Acids

13.54

Weight (kDa)

4.99

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	41
AciI	CCGC	2 cut(s)	80, 104
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	328
AfiI	CCNNNNNNNGG	2 cut(s)	120, 157
AgsI	TTSAA	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	3 cut(s)	74, 123, 283
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	2 cut(s)	266, 298
AspS9I	GGNCC	1 cut(s)	346
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	4 cut(s)	64, 230, 302, 328
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	3 cut(s)	74, 123, 283
BfuAI	ACCTGC	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	2 cut(s)	27, 105
BlsI	GCNGC	2 cut(s)	28, 106
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	346
BmsI	GCATC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 157
Bse1I	ACTGG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	225
BseDI	CCNNGG	1 cut(s)	251
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	120, 157
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	100
BshFI	GGCC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	144
BslFI	GGGAC	2 cut(s)	134, 245
BslI	CCNNNNNNNGG	2 cut(s)	120, 157
BsmAI	GTCTC	3 cut(s)	74, 123, 283
BsmFI	GGGAC	2 cut(s)	134, 245
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	2 cut(s)	80, 104
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	132
BspMI	ACCTGC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	251
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	3 cut(s)	74, 123, 283
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 104
BstNSI	RCATGY	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	215, 357
BveI	ACCTGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	346
CviAII	CATG	1 cut(s)	66
CviJI	RGCY	6 cut(s)	41, 77, 89, 98, 107, 177
CviKI_1	RGCY	6 cut(s)	41, 77, 89, 98, 107, 177
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	283
Eco47I	GGWCC	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	144
FaeI	CATG	1 cut(s)	69
FaiI	YATR	5 cut(s)	67, 196, 342, 344, 354
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	134, 245
FatI	CATG	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	27, 105
Fsp4HI	GCNGC	2 cut(s)	27, 105
GluI	GCNGC	2 cut(s)	27, 105
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	69
HinfI	GANTC	2 cut(s)	147, 205
Hpy188III	TCNNGA	4 cut(s)	19, 144, 151, 325
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	36, 65, 243, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 104
HpyF3I	CTNAG	1 cut(s)	119
Hsp92II	CATG	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	82, 136
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	43, 179
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	3 cut(s)	93, 208, 287
MspA1I	CMGCKG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	95, 104
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	1 cut(s)	69
NspI	RCATGY	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	28, 106
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	346
SatI	GCNGC	2 cut(s)	27, 105
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	4 cut(s)	35, 79, 279, 295
SfaNI	GCATC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	2 cut(s)	80, 104
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	12, 234
TasI	AATT	1 cut(s)	328
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	205
TscAI	CASTG	2 cut(s)	215, 364
TseI	GCWGC	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	215, 364
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.