Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

38269481 .. 38271009

Gene Structure 1529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0314900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCAGACAAGAGTGAGGAAGAACAAGACACAGCGGCGCCGCCGCCCTCGTATTACTTGGTGTTCCTCGGAATCATGAGCAAAAGGAGAACCTGGCCTTCGCCGTCCTCATATGGGTGGCCCGCCCTCTACGCCTCCGTGCTCCTCGGCGCTGTTTTCGGGCTGCTCTCCATGTTTGCAGCGCTGGCTGTGATGGTGCCCGCCACTTTGGTTACGTGGATTGCGATTGTGGTTCTCTTGGCCTTCTTCGGGAAGCCCAGGACGAGTTTGGTCGTCGAAGGCAGGAAGATTACTAGAGAGATTGTTGGGATTGTGTTCAAGATTTTGTTGAAGGAAGGTAATTTGGTGGCTGCTGTTTGTGCTGTTGTGGGCTATTTTGCACTTTTCAGGAGGAATGGGAATGCTACCCCTGACCTCATTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

141

Amino Acids

15.32

Weight (kDa)

9.16

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	37, 196
AciI	CCGC	5 cut(s)	35, 41, 44, 123, 201
AcyI	GRCGYC	1 cut(s)	38
AfeI	AGCGCT	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	114, 249
AgsI	TTSAA	2 cut(s)	319, 331
AjnI	CCWGG	2 cut(s)	92, 257
Alw21I	GWGCWC	1 cut(s)	144
Aor51HI	AGCGCT	1 cut(s)	183
AoxI	GGCC	3 cut(s)	95, 119, 240
ApeKI	GCWGC	3 cut(s)	163, 179, 350
AspLEI	GCGC	3 cut(s)	40, 152, 184
AspS9I	GGNCC	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	201
BanI	GGYRCC	2 cut(s)	37, 196
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	150, 191, 337
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	94, 259
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	3 cut(s)	41, 153, 185
BisI	GCNGC	6 cut(s)	36, 41, 44, 164, 180, 351
BlsI	GCNGC	6 cut(s)	37, 42, 45, 165, 181, 352
Bme1390I	CCNGG	2 cut(s)	94, 259
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	39, 198
BmrFI	CCNGG	2 cut(s)	94, 259
BsaAI	YACGTR	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	67, 145, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 249
BseBI	CCWGG	2 cut(s)	94, 259
BseDI	CCNNGG	3 cut(s)	67, 145, 257
BseLI	CCNNNNNNNGG	2 cut(s)	114, 249
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	3 cut(s)	150, 191, 337
BshFI	GGCC	3 cut(s)	97, 121, 242
BshNI	GGYRCC	2 cut(s)	37, 196
BsiHKAI	GWGCWC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	114, 249
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	97, 121, 242
Bsp1286I	GDGCHC	2 cut(s)	144, 201
BspACI	CCGC	5 cut(s)	35, 41, 44, 123, 201
BspANI	GGCC	3 cut(s)	97, 121, 242
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	39, 198
BspT107I	GGYRCC	2 cut(s)	37, 196
BssECI	CCNNGG	3 cut(s)	67, 145, 257
BssNI	GRCGYC	1 cut(s)	38
Bst2UI	CCWGG	2 cut(s)	94, 259
BstACI	GRCGYC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	123, 186, 201
BstH2I	RGCGCY	3 cut(s)	41, 153, 185
BstHHI	GCGC	3 cut(s)	40, 152, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 185, 359
BstNI	CCWGG	2 cut(s)	94, 259
BstSCI	CCNGG	2 cut(s)	92, 257
BstSLI	GKGCMC	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	150, 191, 337
BsuRI	GGCC	3 cut(s)	97, 121, 242
Cac8I	GCNNGC	3 cut(s)	123, 186, 201
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	3 cut(s)	40, 152, 184
Cfr13I	GGNCC	1 cut(s)	120
CviAII	CATG	2 cut(s)	76, 172
CviJI	RGCY	8 cut(s)	97, 121, 163, 188, 242, 256, 350, 372
CviKI_1	RGCY	8 cut(s)	97, 121, 163, 188, 242, 256, 350, 372
DinI	GGCGCC	1 cut(s)	39
Eco47III	AGCGCT	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	92, 257
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
FaeI	CATG	2 cut(s)	79, 175
FaiI	YATR	4 cut(s)	77, 112, 114, 173
FatI	CATG	2 cut(s)	75, 171
FauI	CCCGC	2 cut(s)	130, 208
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	6 cut(s)	36, 41, 44, 164, 180, 351
Fsp4HI	GCNGC	6 cut(s)	36, 41, 44, 164, 180, 351
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	3 cut(s)	39, 151, 183
GluI	GCNGC	6 cut(s)	36, 41, 44, 164, 180, 351
HaeII	RGCGCY	3 cut(s)	41, 153, 185
HaeIII	GGCC	3 cut(s)	97, 121, 242
HhaI	GCGC	3 cut(s)	40, 152, 184
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	79, 175
Hin6I	GCGC	3 cut(s)	38, 150, 182
HinP1I	GCGC	3 cut(s)	38, 150, 182
HinfI	GANTC	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	4 cut(s)	76, 250, 319, 388
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	5 cut(s)	108, 253, 272, 325, 329
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	179, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 185, 359
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	79, 175
HspAI	GCGC	3 cut(s)	38, 150, 182
KasI	GGCGCC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	7 cut(s)	79, 106, 170, 244, 268, 271, 373
Lsp1109I	GCAGC	3 cut(s)	150, 191, 337
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	3 cut(s)	32, 238, 298
MhlI	GDGCHC	2 cut(s)	144, 201
MluCI	AATT	1 cut(s)	340
Mly113I	GGCGCC	1 cut(s)	38
MnlI	CCTC	9 cut(s)	10, 58, 77, 118, 137, 145, 155, 384, 425
MslI	CAYNNNNRTG	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	94, 259
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	94, 259
MwoI	GCNNNNNNNGC	3 cut(s)	131, 185, 359
NarI	GGCGCC	1 cut(s)	38
NdeI	CATATG	1 cut(s)	112
NlaIII	CATG	2 cut(s)	79, 175
NlaIV	GGNNCC	2 cut(s)	39, 198
NmeAIII	GCCGAG	1 cut(s)	126
PagI	TCATGA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	6 cut(s)	37, 42, 45, 165, 181, 352
PluTI	GGCGCC	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	92, 257
PspGI	CCWGG	2 cut(s)	92, 257
PspN4I	GGNNCC	2 cut(s)	39, 198
PspPI	GGNCC	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	115
SatI	GCNGC	6 cut(s)	36, 41, 44, 164, 180, 351
Sau96I	GGNCC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	94, 259
SduI	GDGCHC	2 cut(s)	144, 201
SetI	ASST	4 cut(s)	95, 218, 340, 417
SfoI	GGCGCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	5 cut(s)	35, 41, 44, 123, 201
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	2 cut(s)	92, 257
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	340
TauI	GCSGC	3 cut(s)	38, 43, 46
TfiI	GAWTC	1 cut(s)	72
TseI	GCWGC	3 cut(s)	163, 179, 350
TspGWI	ACGGA	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.