Rorug01G0324800

Homeodomain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000322
Physical Location & Seq
Forward (+)
44404970 .. 44408061
3092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0324800.1

Sequence Viewer

Length: 1146 bp
ATGGAGTACTTTGTGCAAGGAGATCAAAAAGGGTATTCTGATAAAGAAGAGGATCAAGAAGAGGAAGAAGAAGACAAGAACCACATCATTAACAGTAAGTACTTATCTCCTTCTTACAATTATGGGTCATCATCATCCTCCTCCCAAACCCCAGAAGCCATAAACTTCATGGACTTGTCACTAAGAAATGCGAAAGACAACGACAACAACAACAACAACAACAACAACGATTGGCCCCCAAACAGTGAGCGAGAGCACATGTTTGACAAAGTTGTTACCCCAAGTGATGTGGGCAAGCTCAACCGTCTAGTGATCCCAAAACAACATGCCGAGAAGTACTTCCCACTTGATTCGTCCACCAACGAGAAGGGTCTGTTATTAAACTTCCAGGACCGGACTGGGAAGCCGTGGCGGTTCAGGTACTCTTACTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGCTGGAGCCGGTTTGTCAAGGACAAGAAGCTTGATGCTGGTGACATTGTGTCCTTCGAGCGGAGTGTAAGGGACTCAAATGTCTTGTACATTGACTGGAAACGCCGCCCTCCGCCTCCTCTACCCCCTAATCAAACTTCTCTCTGGGGAGGTGGAGGGCGATTTTACTCGCTGCAGCGGCCTCCACTAATGTCAATGCCGCTGCGGCATCACGAGCATTTTCATTACAACATTCACCATCCATACCATCACCAGTATCAGTATCATCAGATCAACCCCTACCAACTGCAGCAGCAGCAGCAGCAACAACAACAATACTACCACCACAGAGGAATTAGTCCCGCCGTGGTGATTGATTCAGTGCCACTGGTCCAACATCATCACCATCACCATGGTAAAAATATGAGTCCTACTACTAATAAGCGGCTTAGGCTGTTTGGTGTGAACATGGAGTACAGTCCAATGCAAGAAGATGAACCAGAACAATGTCAGATATTGTCTTCCACAGTGGCTTCGCTCTCTCCACATCAACATCATCATCATCATCACCTTCCTTCTTCTTCGCTTTCTCAACCTCTGGAATTAAGGCTGCCCAATTATGCTGCCCCACTGGCCGGTTCAGCGGATCAGCTGCTTTCTGAAAAGGGAAAATCTACTTCCTTGTCGTTTTATTCGGATCCCTAA

Protein Analysis

381

Amino Acids

44.39

Weight (kDa)

6.71

Isoelectric Point (pI)

62.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 88 - 189 7.6e-27 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000322)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
AccB7I CCANNNNNTGG 1 cut(s) 465
AccBSI CCGCTC 1 cut(s) 523
AclWI GGATC 4 cut(s) 60, 307, 1095, 1133
AcoI YGGCCR 1 cut(s) 1074
AfaI GTAC 6 cut(s) 8, 101, 338, 422, 551, 917
AfiI CCNNNNNNNGG 3 cut(s) 465, 522, 1076
AflIII ACRYGT 1 cut(s) 258
AhdI GACNNNNNGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 4 cut(s) 298, 447, 493, 1093
AluI AGCT 4 cut(s) 298, 447, 493, 1093
Alw21I GWGCWC 1 cut(s) 258
AlwI GGATC 4 cut(s) 60, 307, 1095, 1133
AoxI GGCC 3 cut(s) 233, 641, 1074
Asp700I GAANNNNTTC 1 cut(s) 338
AspS9I GGNCC 3 cut(s) 234, 391, 832
AsuHPI GGTGA 7 cut(s) 515, 689, 704, 823, 836, 842, 1001
AvaII GGWCC 2 cut(s) 391, 832
BamHI GGATCC 1 cut(s) 1138
BauI CACGAG 1 cut(s) 674
BbsI GAAGAC 2 cut(s) 78, 954
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 3 cut(s) 708, 717, 855
BceAI ACGGC 2 cut(s) 391, 791
BciT130I CCWGG 1 cut(s) 389
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 2 cut(s) 635, 749
BglI GCCNNNNNGGC 2 cut(s) 667, 1073
BmcAI AGTACT 3 cut(s) 8, 101, 338
Bme1390I CCNGG 1 cut(s) 389
Bme18I GGWCC 2 cut(s) 391, 832
BmeRI GACNNNNNGTC 1 cut(s) 511
BmgT120I GGNCC 3 cut(s) 234, 391, 832
BmiI GGNNCC 3 cut(s) 236, 470, 1140
BmrFI CCNGG 1 cut(s) 389
BmrI ACTGGG 1 cut(s) 408
BmsI GCATC 2 cut(s) 487, 679
BmuI ACTGGG 1 cut(s) 408
BpiI GAAGAC 2 cut(s) 78, 954
BpmI CTGGAG 1 cut(s) 487
Bpu10I CCTNAGC 1 cut(s) 890
BsaJI CCNNGG 3 cut(s) 407, 807, 853
BsaWI WCCGGW 1 cut(s) 393
Bsc4I CCNNNNNNNGG 3 cut(s) 465, 522, 1076
Bse118I RCCGGY 2 cut(s) 471, 1076
Bse1I ACTGG 6 cut(s) 403, 434, 563, 715, 834, 1077
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 3 cut(s) 407, 807, 853
BseGI GGATG 2 cut(s) 134, 700
BseLI CCNNNNNNNGG 3 cut(s) 465, 522, 1076
BseNI ACTGG 6 cut(s) 403, 434, 563, 715, 834, 1077
BseRI GAGGAG 2 cut(s) 130, 570
BshFI GGCC 3 cut(s) 235, 643, 1076
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 3 cut(s) 394, 472, 1077
BslFI GGGAC 2 cut(s) 548, 786
BslI CCNNNNNNNGG 3 cut(s) 465, 522, 1076
BsmFI GGGAC 2 cut(s) 548, 786
BsnI GGCC 3 cut(s) 235, 643, 1076
Bsp1286I GDGCHC 1 cut(s) 258
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 6 cut(s) 22, 52, 312, 732, 1087, 1138
Bsp19I CCATGG 1 cut(s) 853
BspANI GGCC 3 cut(s) 235, 643, 1076
BspLI GGNNCC 3 cut(s) 236, 470, 1140
BspMAI CTGCAG 2 cut(s) 639, 753
BspPI GGATC 4 cut(s) 60, 307, 1095, 1133
BsrBI CCGCTC 1 cut(s) 523
BsrFI RCCGGY 2 cut(s) 471, 1076
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 6 cut(s) 403, 434, 563, 715, 834, 1077
BssAI RCCGGY 2 cut(s) 471, 1076
BssECI CCNNGG 3 cut(s) 407, 807, 853
BssMI GATC 6 cut(s) 22, 52, 312, 732, 1087, 1138
BssSI CACGAG 1 cut(s) 674
BssT1I CCWWGG 1 cut(s) 853
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 6 cut(s) 95, 245, 305, 437, 920, 970
Bst6I CTCTTC 2 cut(s) 42, 54
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 182, 890
BstDSI CCRYGG 3 cut(s) 407, 807, 853
BstF5I GGATG 2 cut(s) 134, 700
BstKTI GATC 6 cut(s) 25, 55, 315, 735, 1090, 1141
BstMBI GATC 6 cut(s) 22, 52, 312, 732, 1087, 1138
BstMWI GCNNNNNNNGC 9 cut(s) 640, 667, 676, 757, 760, 763, 892, 1073, 1082
BstNI CCWGG 1 cut(s) 389
BstNSI RCATGY 2 cut(s) 262, 329
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 2 cut(s) 635, 749
BstV2I GAAGAC 2 cut(s) 78, 954
BstX2I RGATCY 1 cut(s) 1138
BstXI CCANNNNNNTGG 1 cut(s) 854
BstYI RGATCY 1 cut(s) 1138
BsuRI GGCC 3 cut(s) 235, 643, 1076
BtgI CCRYGG 3 cut(s) 407, 807, 853
BtsCI GGATG 2 cut(s) 134, 700
BtsIMutI CAGTG 5 cut(s) 250, 827, 828, 975, 1070
Cac8I GCNNGC 1 cut(s) 296
Cfr10I RCCGGY 2 cut(s) 471, 1076
Cfr13I GGNCC 3 cut(s) 234, 391, 832
Csp6I GTAC 6 cut(s) 7, 100, 337, 421, 550, 916
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 5 cut(s) 169, 259, 326, 854, 910
CviQI GTAC 6 cut(s) 7, 100, 337, 421, 550, 916
DdeI CTNAG 2 cut(s) 182, 890
DpnI GATC 6 cut(s) 24, 54, 314, 734, 1089, 1140
DpnII GATC 6 cut(s) 22, 52, 312, 732, 1087, 1138
DrdI GACNNNNNNGTC 1 cut(s) 542
DriI GACNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 1 cut(s) 1074
Eam1104I CTCTTC 2 cut(s) 42, 54
Eam1105I GACNNNNNGTC 1 cut(s) 511
EarI CTCTTC 2 cut(s) 42, 54
EciI GGCGGA 1 cut(s) 564
Eco130I CCWWGG 1 cut(s) 853
Eco47I GGWCC 2 cut(s) 391, 832
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 853
ErhI CCWWGG 1 cut(s) 853
FaeI CATG 5 cut(s) 172, 262, 329, 857, 913
FaqI GGGAC 2 cut(s) 548, 786
FatI CATG 5 cut(s) 168, 258, 325, 853, 909
FauI CCCGC 1 cut(s) 811
FokI GGATG 2 cut(s) 121, 687
FspBI CTAG 1 cut(s) 308
GsuI CTGGAG 1 cut(s) 487
HaeIII GGCC 3 cut(s) 235, 643, 1076
HapII CCGG 3 cut(s) 394, 472, 1077
Hin1II CATG 5 cut(s) 172, 262, 329, 857, 913
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 4 cut(s) 350, 536, 818, 868
HpaII CCGG 3 cut(s) 394, 472, 1077
HphI GGTGA 7 cut(s) 515, 689, 704, 823, 836, 842, 1001
Hpy166II GTNNAC 2 cut(s) 357, 907
Hpy188I TCNGA 5 cut(s) 40, 732, 954, 1102, 1138
Hpy188III TCNNGA 3 cut(s) 56, 674, 1040
Hpy8I GTNNAC 2 cut(s) 357, 907
HpyAV CCTTC 5 cut(s) 120, 361, 526, 1022, 1026
HpyCH4III ACNGT 6 cut(s) 95, 245, 305, 437, 920, 970
HpyCH4V TGCA 4 cut(s) 16, 637, 751, 928
HpyF10VI GCNNNNNNNGC 9 cut(s) 640, 667, 676, 757, 760, 763, 892, 1073, 1082
HpyF3I CTNAG 2 cut(s) 182, 890
Hsp92II CATG 5 cut(s) 172, 262, 329, 857, 913
Kzo9I GATC 6 cut(s) 22, 52, 312, 732, 1087, 1138
LmnI GCTCC 1 cut(s) 468
LweI GCATC 2 cut(s) 487, 679
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 3 cut(s) 177, 274, 503
MalI GATC 6 cut(s) 24, 54, 314, 734, 1089, 1140
MbiI CCGCTC 1 cut(s) 523
MboI GATC 6 cut(s) 22, 52, 312, 732, 1087, 1138
MboII GAAGA 9 cut(s) 59, 71, 77, 80, 83, 944, 954, 1011, 1014
MflI RGATCY 1 cut(s) 1138
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 4 cut(s) 118, 795, 1043, 1057
MlyI GAGTC 2 cut(s) 530, 877
MmeI TCCRAC 1 cut(s) 859
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 3 cut(s) 90, 380, 1046
MslI CAYNNNNRTG 1 cut(s) 852
MspA1I CMGCKG 4 cut(s) 640, 664, 1085, 1093
MspI CCGG 3 cut(s) 394, 472, 1077
MspR9I CCNGG 1 cut(s) 389
MvaI CCWGG 1 cut(s) 389
MwoI GCNNNNNNNGC 9 cut(s) 640, 667, 676, 757, 760, 763, 892, 1073, 1082
NcoI CCATGG 1 cut(s) 853
NdeII GATC 6 cut(s) 22, 52, 312, 732, 1087, 1138
NlaIII CATG 5 cut(s) 172, 262, 329, 857, 913
NlaIV GGNNCC 3 cut(s) 236, 470, 1140
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 177, 503
NspI RCATGY 2 cut(s) 262, 329
PciI ACATGT 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 350, 818
PflMI CCANNNNNTGG 1 cut(s) 465
PfoI TCCNGGA 1 cut(s) 387
PleI GAGTC 2 cut(s) 530, 876
PpsI GAGTC 2 cut(s) 530, 876
PscI ACATGT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 387
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 3 cut(s) 236, 470, 1140
PspPI GGNCC 3 cut(s) 234, 391, 832
PsrI GAACNNNNNNTAC 2 cut(s) 899, 931
PstI CTGCAG 2 cut(s) 639, 753
PsuI RGATCY 1 cut(s) 1138
PvuII CAGCTG 1 cut(s) 1093
RsaI GTAC 6 cut(s) 8, 101, 338, 422, 551, 917
RsaNI GTAC 6 cut(s) 7, 100, 337, 421, 550, 916
RseI CAYNNNNRTG 1 cut(s) 852
SaqAI TTAA 3 cut(s) 90, 380, 1046
Sau3AI GATC 6 cut(s) 22, 52, 312, 732, 1087, 1138
Sau96I GGNCC 3 cut(s) 234, 391, 832
ScaI AGTACT 3 cut(s) 8, 101, 338
SchI GAGTC 2 cut(s) 530, 877
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 258
SetI ASST 8 cut(s) 300, 422, 449, 495, 616, 1014, 1039, 1095
SfaNI GCATC 2 cut(s) 487, 679
SfcI CTRYAG 2 cut(s) 635, 749
SinI GGWCC 2 cut(s) 391, 832
SmiMI CAYNNNNRTG 1 cut(s) 852
Sse9I AATT 4 cut(s) 118, 795, 1043, 1057
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 853
TaaI ACNGT 6 cut(s) 95, 245, 305, 437, 920, 970
TaqI TCGA 1 cut(s) 519
TasI AATT 4 cut(s) 118, 795, 1043, 1057
TatI WGTACW 5 cut(s) 6, 99, 336, 549, 915
TauI GCSGC 5 cut(s) 570, 643, 664, 670, 889
TfiI GAWTC 2 cut(s) 350, 818
Tru1I TTAA 3 cut(s) 90, 380, 1046
Tru9I TTAA 3 cut(s) 90, 380, 1046
TscAI CASTG 5 cut(s) 250, 828, 834, 975, 1077
TseFI GTSAC 2 cut(s) 177, 503
Tsp45I GTSAC 2 cut(s) 177, 503
TspDTI ATGAA 3 cut(s) 157, 674, 951
TspRI CASTG 5 cut(s) 250, 828, 834, 975, 1077
Van91I CCANNNNNTGG 1 cut(s) 465
VpaK11BI GGWCC 2 cut(s) 391, 832
XceI RCATGY 2 cut(s) 262, 329
XcmI CCANNNNNNNNNTGG 2 cut(s) 166, 395
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 1 cut(s) 308
ZrmI AGTACT 3 cut(s) 8, 101, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.