Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Fasciclin | PF02469 | 48 - 184 | 4.9e-22 | Fasciclin domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 275 |
| AccB1I | GGYRCC | 2 cut(s) | 82, 275 |
| AccBSI | CCGCTC | 1 cut(s) | 468 |
| AccII | CGCG | 1 cut(s) | 572 |
| AclWI | GGATC | 3 cut(s) | 421, 432, 445 |
| AcoI | YGGCCR | 3 cut(s) | 139, 183, 603 |
| AfaI | GTAC | 4 cut(s) | 277, 323, 341, 527 |
| AflIII | ACRYGT | 1 cut(s) | 570 |
| AluBI | AGCT | 5 cut(s) | 8, 137, 205, 313, 738 |
| AluI | AGCT | 5 cut(s) | 8, 137, 205, 313, 738 |
| Alw26I | GTCTC | 2 cut(s) | 362, 373 |
| AlwI | GGATC | 3 cut(s) | 421, 432, 445 |
| AoxI | GGCC | 6 cut(s) | 139, 183, 223, 421, 603, 636 |
| ApeKI | GCWGC | 2 cut(s) | 5, 505 |
| Asp718I | GGTACC | 1 cut(s) | 275 |
| AspS9I | GGNCC | 1 cut(s) | 223 |
| AsuC2I | CCSGG | 1 cut(s) | 102 |
| AsuHPI | GGTGA | 5 cut(s) | 109, 160, 424, 487, 567 |
| BalI | TGGCCA | 2 cut(s) | 141, 185 |
| BamHI | GGATCC | 1 cut(s) | 437 |
| BanI | GGYRCC | 2 cut(s) | 82, 275 |
| BbvI | GCAGC | 2 cut(s) | 17, 517 |
| BccI | CCATC | 1 cut(s) | 655 |
| BceAI | ACGGC | 3 cut(s) | 26, 96, 436 |
| BcnI | CCSGG | 1 cut(s) | 102 |
| BcoDI | GTCTC | 2 cut(s) | 362, 373 |
| BfaI | CTAG | 5 cut(s) | 128, 314, 707, 735, 739 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 80 |
| BisI | GCNGC | 4 cut(s) | 6, 48, 506, 639 |
| BlsI | GCNGC | 4 cut(s) | 7, 49, 507, 640 |
| BmcAI | AGTACT | 1 cut(s) | 341 |
| Bme1390I | CCNGG | 1 cut(s) | 102 |
| BmgT120I | GGNCC | 1 cut(s) | 223 |
| BmiI | GGNNCC | 5 cut(s) | 84, 277, 439, 449, 582 |
| BmrFI | CCNGG | 1 cut(s) | 102 |
| BmsI | GCATC | 1 cut(s) | 132 |
| BpuMI | CCSGG | 1 cut(s) | 102 |
| BsaI | GGTCTC | 1 cut(s) | 373 |
| BsaJI | CCNNGG | 1 cut(s) | 219 |
| BsaWI | WCCGGW | 2 cut(s) | 434, 440 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 6, 36, 275, 278, 305, 308, 583, 613 |
| Bse118I | RCCGGY | 3 cut(s) | 119, 272, 577 |
| Bse1I | ACTGG | 1 cut(s) | 354 |
| Bse3DI | GCAATG | 1 cut(s) | 16 |
| BseDI | CCNNGG | 1 cut(s) | 219 |
| BseGI | GGATG | 1 cut(s) | 123 |
| BseMI | GCAATG | 1 cut(s) | 16 |
| BseMII | CTCAG | 2 cut(s) | 401, 497 |
| BseNI | ACTGG | 1 cut(s) | 354 |
| BseRI | GAGGAG | 5 cut(s) | 23, 26, 155, 202, 283 |
| BseX3I | CGGCCG | 1 cut(s) | 603 |
| BseXI | GCAGC | 2 cut(s) | 17, 517 |
| Bsh1236I | CGCG | 1 cut(s) | 572 |
| Bsh1285I | CGRYCG | 1 cut(s) | 606 |
| BshFI | GGCC | 6 cut(s) | 141, 185, 225, 423, 605, 638 |
| BshNI | GGYRCC | 2 cut(s) | 82, 275 |
| BsiEI | CGRYCG | 1 cut(s) | 606 |
| BsiSI | CCGG | 8 cut(s) | 102, 120, 273, 435, 441, 578, 602, 606 |
| BslFI | GGGAC | 1 cut(s) | 382 |
| BsmAI | GTCTC | 2 cut(s) | 362, 373 |
| BsmFI | GGGAC | 1 cut(s) | 382 |
| BsnI | GGCC | 6 cut(s) | 141, 185, 225, 423, 605, 638 |
| Bso31I | GGTCTC | 1 cut(s) | 373 |
| Bsp143I | GATC | 3 cut(s) | 413, 437, 486 |
| BspANI | GGCC | 6 cut(s) | 141, 185, 225, 423, 605, 638 |
| BspCNI | CTCAG | 2 cut(s) | 400, 496 |
| BspFNI | CGCG | 1 cut(s) | 572 |
| BspLI | GGNNCC | 5 cut(s) | 84, 277, 439, 449, 582 |
| BspPI | GGATC | 3 cut(s) | 421, 432, 445 |
| BspQI | GCTCTTC | 1 cut(s) | 674 |
| BspT107I | GGYRCC | 2 cut(s) | 82, 275 |
| BspTNI | GGTCTC | 1 cut(s) | 373 |
| BsrBI | CCGCTC | 1 cut(s) | 468 |
| BsrDI | GCAATG | 1 cut(s) | 16 |
| BsrFI | RCCGGY | 3 cut(s) | 119, 272, 577 |
| BsrI | ACTGG | 1 cut(s) | 354 |
| BssAI | RCCGGY | 3 cut(s) | 119, 272, 577 |
| BssECI | CCNNGG | 1 cut(s) | 219 |
| BssMI | GATC | 3 cut(s) | 413, 437, 486 |
| Bst4CI | ACNGT | 3 cut(s) | 232, 367, 659 |
| Bst6I | CTCTTC | 1 cut(s) | 674 |
| BstC8I | GCNNGC | 2 cut(s) | 139, 203 |
| BstDEI | CTNAG | 2 cut(s) | 387, 483 |
| BstF5I | GGATG | 1 cut(s) | 123 |
| BstFNI | CGCG | 1 cut(s) | 572 |
| BstKTI | GATC | 3 cut(s) | 416, 440, 489 |
| BstMAI | GTCTC | 2 cut(s) | 362, 373 |
| BstMBI | GATC | 3 cut(s) | 413, 437, 486 |
| BstMCI | CGRYCG | 1 cut(s) | 606 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 47, 80, 578, 659, 681 |
| BstSCI | CCNGG | 1 cut(s) | 100 |
| BstUI | CGCG | 1 cut(s) | 572 |
| BstV1I | GCAGC | 2 cut(s) | 17, 517 |
| BstX2I | RGATCY | 2 cut(s) | 413, 437 |
| BstYI | RGATCY | 2 cut(s) | 413, 437 |
| BstZI | CGGCCG | 1 cut(s) | 603 |
| BsuRI | GGCC | 6 cut(s) | 141, 185, 225, 423, 605, 638 |
| BtsCI | GGATG | 1 cut(s) | 123 |
| BtsIMutI | CAGTG | 1 cut(s) | 664 |
| Cac8I | GCNNGC | 2 cut(s) | 139, 203 |
| Cfr10I | RCCGGY | 3 cut(s) | 119, 272, 577 |
| Cfr13I | GGNCC | 1 cut(s) | 223 |
| CseI | GACGC | 2 cut(s) | 561, 578 |
| Csp6I | GTAC | 4 cut(s) | 276, 322, 340, 526 |
| CviAII | CATG | 3 cut(s) | 65, 326, 727 |
| CviQI | GTAC | 4 cut(s) | 276, 322, 340, 526 |
| DdeI | CTNAG | 2 cut(s) | 387, 483 |
| DpnI | GATC | 3 cut(s) | 415, 439, 488 |
| DpnII | GATC | 3 cut(s) | 413, 437, 486 |
| EaeI | YGGCCR | 3 cut(s) | 139, 183, 603 |
| EagI | CGGCCG | 1 cut(s) | 603 |
| Eam1104I | CTCTTC | 1 cut(s) | 674 |
| EarI | CTCTTC | 1 cut(s) | 674 |
| EciI | GGCGGA | 2 cut(s) | 149, 426 |
| EclXI | CGGCCG | 1 cut(s) | 603 |
| Eco31I | GGTCTC | 1 cut(s) | 373 |
| Eco52I | CGGCCG | 1 cut(s) | 603 |
| EcoO109I | RGGNCCY | 1 cut(s) | 223 |
| FaeI | CATG | 3 cut(s) | 68, 329, 730 |
| FaiI | YATR | 3 cut(s) | 66, 327, 728 |
| FaqI | GGGAC | 1 cut(s) | 382 |
| FatI | CATG | 3 cut(s) | 64, 325, 726 |
| FauI | CCCGC | 4 cut(s) | 94, 100, 105, 461 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 48, 506, 639 |
| FokI | GGATG | 1 cut(s) | 110 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 48, 506, 639 |
| FspBI | CTAG | 5 cut(s) | 128, 314, 707, 735, 739 |
| GluI | GCNGC | 4 cut(s) | 6, 48, 506, 639 |
| HaeIII | GGCC | 6 cut(s) | 141, 185, 225, 423, 605, 638 |
| HapII | CCGG | 8 cut(s) | 102, 120, 273, 435, 441, 578, 602, 606 |
| HgaI | GACGC | 2 cut(s) | 561, 578 |
| Hin1II | CATG | 3 cut(s) | 68, 329, 730 |
| HincII | GTYRAC | 1 cut(s) | 535 |
| HindII | GTYRAC | 1 cut(s) | 535 |
| HinfI | GANTC | 1 cut(s) | 690 |
| HpaII | CCGG | 8 cut(s) | 102, 120, 273, 435, 441, 578, 602, 606 |
| HphI | GGTGA | 5 cut(s) | 109, 160, 424, 487, 567 |
| Hpy166II | GTNNAC | 2 cut(s) | 526, 535 |
| Hpy188I | TCNGA | 2 cut(s) | 486, 591 |
| Hpy188III | TCNNGA | 1 cut(s) | 370 |
| Hpy8I | GTNNAC | 2 cut(s) | 526, 535 |
| Hpy99I | CGWCG | 1 cut(s) | 47 |
| HpyAV | CCTTC | 3 cut(s) | 61, 163, 265 |
| HpyCH4III | ACNGT | 3 cut(s) | 232, 367, 659 |
| HpyCH4V | TGCA | 1 cut(s) | 239 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 47, 80, 578, 659, 681 |
| HpyF3I | CTNAG | 2 cut(s) | 387, 483 |
| Hsp92II | CATG | 3 cut(s) | 68, 329, 730 |
| KpnI | GGTACC | 1 cut(s) | 279 |
| Kzo9I | GATC | 3 cut(s) | 413, 437, 486 |
| LguI | GCTCTTC | 1 cut(s) | 674 |
| LmnI | GCTCC | 1 cut(s) | 586 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 517 |
| LweI | GCATC | 1 cut(s) | 132 |
| MaeI | CTAG | 5 cut(s) | 128, 314, 707, 735, 739 |
| MaeIII | GTNAC | 4 cut(s) | 475, 546, 566, 573 |
| MalI | GATC | 3 cut(s) | 415, 439, 488 |
| MbiI | CCGCTC | 1 cut(s) | 468 |
| MboI | GATC | 3 cut(s) | 413, 437, 486 |
| MboII | GAAGA | 2 cut(s) | 46, 691 |
| MflI | RGATCY | 2 cut(s) | 413, 437 |
| MlsI | TGGCCA | 2 cut(s) | 141, 185 |
| MluI | ACGCGT | 1 cut(s) | 570 |
| MluNI | TGGCCA | 2 cut(s) | 141, 185 |
| MmeI | TCCRAC | 1 cut(s) | 614 |
| Mox20I | TGGCCA | 2 cut(s) | 141, 185 |
| MscI | TGGCCA | 2 cut(s) | 141, 185 |
| MseI | TTAA | 2 cut(s) | 111, 281 |
| Msp20I | TGGCCA | 2 cut(s) | 141, 185 |
| MspI | CCGG | 8 cut(s) | 102, 120, 273, 435, 441, 578, 602, 606 |
| MspR9I | CCNGG | 1 cut(s) | 102 |
| MvnI | CGCG | 1 cut(s) | 572 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 47, 80, 578, 659, 681 |
| NciI | CCSGG | 1 cut(s) | 102 |
| NdeII | GATC | 3 cut(s) | 413, 437, 486 |
| NlaIII | CATG | 3 cut(s) | 68, 329, 730 |
| NlaIV | GGNNCC | 5 cut(s) | 84, 277, 439, 449, 582 |
| NmuCI | GTSAC | 3 cut(s) | 475, 566, 573 |
| PciSI | GCTCTTC | 1 cut(s) | 674 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 626 |
| PfeI | GAWTC | 1 cut(s) | 690 |
| PkrI | GCNGC | 4 cut(s) | 7, 49, 507, 640 |
| PspN4I | GGNNCC | 5 cut(s) | 84, 277, 439, 449, 582 |
| PspPI | GGNCC | 1 cut(s) | 223 |
| PsuI | RGATCY | 2 cut(s) | 413, 437 |
| RsaI | GTAC | 4 cut(s) | 277, 323, 341, 527 |
| RsaNI | GTAC | 4 cut(s) | 276, 322, 340, 526 |
| SapI | GCTCTTC | 1 cut(s) | 674 |
| SaqAI | TTAA | 2 cut(s) | 111, 281 |
| SatI | GCNGC | 4 cut(s) | 6, 48, 506, 639 |
| Sau3AI | GATC | 3 cut(s) | 413, 437, 486 |
| Sau96I | GGNCC | 1 cut(s) | 223 |
| ScaI | AGTACT | 1 cut(s) | 341 |
| ScrFI | CCNGG | 1 cut(s) | 102 |
| SfaNI | GCATC | 1 cut(s) | 132 |
| SspMI | CTAG | 5 cut(s) | 128, 314, 707, 735, 739 |
| StyD4I | CCNGG | 1 cut(s) | 100 |
| TaaI | ACNGT | 3 cut(s) | 232, 367, 659 |
| TaqI | TCGA | 3 cut(s) | 371, 464, 671 |
| TatI | WGTACW | 1 cut(s) | 339 |
| TauI | GCSGC | 2 cut(s) | 50, 641 |
| TfiI | GAWTC | 1 cut(s) | 690 |
| Tru1I | TTAA | 2 cut(s) | 111, 281 |
| Tru9I | TTAA | 2 cut(s) | 111, 281 |
| TscAI | CASTG | 1 cut(s) | 664 |
| TseFI | GTSAC | 3 cut(s) | 475, 566, 573 |
| TseI | GCWGC | 2 cut(s) | 5, 505 |
| Tsp45I | GTSAC | 3 cut(s) | 475, 566, 573 |
| TspDTI | ATGAA | 1 cut(s) | 715 |
| TspGWI | ACGGA | 2 cut(s) | 420, 504 |
| TspRI | CASTG | 1 cut(s) | 664 |
| XspI | CTAG | 5 cut(s) | 128, 314, 707, 735, 739 |
| ZrmI | AGTACT | 1 cut(s) | 341 |