Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ResIII | PF04851 | 296 - 461 | 1e-14 | Type III restriction enzyme, res subunit |
| DEAD | PF00270 | 297 - 461 | 7e-16 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 693 - 810 | 1.6e-16 | Helicase conserved C-terminal domain |
| Dicer_dimer | PF03368 | 885 - 973 | 4.4e-22 | Dicer dimerisation domain |
| PAZ | PF02170 | 1252 - 1386 | 3.8e-18 | PAZ domain |
| Ribonucleas_3_3 | PF14622 | 1413 - 1482 | 1.5e-07 | Ribonuclease-III-like |
| Ribonuclease_3 | PF00636 | 1424 - 1569 | 1e-20 | Ribonuclease III domain |
| Ribonucleas_3_3 | PF14622 | 1623 - 1761 | 6.4e-13 | Ribonuclease-III-like |
| Ribonuclease_3 | PF00636 | 1645 - 1758 | 1.7e-22 | Ribonuclease III domain |
| dsrm | PF00035 | 1785 - 1845 | 1e-05 | Double-stranded RNA binding motif |
| DND1_DSRM | PF14709 | 1875 - 1948 | 1.7e-15 | double strand RNA binding domain from DEAD END PROTEIN 1 |
| dsrm | PF00035 | 1878 - 1948 | 2.4e-07 | Double-stranded RNA binding motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1238 |
| Acc16I | TGCGCA | 1 cut(s) | 2844 |
| Acc36I | ACCTGC | 1 cut(s) | 5010 |
| AccB1I | GGYRCC | 2 cut(s) | 495, 5252 |
| AccB7I | CCANNNNNTGG | 7 cut(s) | 1551, 2887, 2978, 3369, 3620, 4106, 4916 |
| AccBSI | CCGCTC | 1 cut(s) | 493 |
| AccI | GTMKAC | 1 cut(s) | 3114 |
| AccII | CGCG | 2 cut(s) | 1089, 5739 |
| AcoI | YGGCCR | 1 cut(s) | 2233 |
| AcsI | RAATTY | 9 cut(s) | 121, 346, 577, 1206, 2288, 2647, 2720, 4859, 5059 |
| AcuI | CTGAAG | 6 cut(s) | 867, 875, 3030, 5268, 5412, 5574 |
| AcvI | CACGTG | 1 cut(s) | 5069 |
| AcyI | GRCGYC | 1 cut(s) | 2072 |
| AdeI | CACNNNGTG | 2 cut(s) | 1288, 1763 |
| AfaI | GTAC | 5 cut(s) | 2605, 2702, 3751, 3890, 4095 |
| AfeI | AGCGCT | 1 cut(s) | 4677 |
| AflII | CTTAAG | 1 cut(s) | 4184 |
| AflIII | ACRYGT | 2 cut(s) | 3093, 5068 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3971 |
| AhlI | ACTAGT | 1 cut(s) | 2324 |
| AjiI | CACGTC | 2 cut(s) | 3968, 5276 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3450, 3482, 3858, 3890, 4665, 4697 |
| AleI | CACNNNNGTG | 1 cut(s) | 1119 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 42, 74 |
| Alw21I | GWGCWC | 2 cut(s) | 4781, 5122 |
| Alw26I | GTCTC | 9 cut(s) | 1345, 2164, 2510, 2798, 3979, 4050, 4366, 4467, 5330 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1738, 5506 |
| Ama87I | CYCGRG | 3 cut(s) | 606, 3796, 3856 |
| Aor51HI | AGCGCT | 1 cut(s) | 4677 |
| ApoI | RAATTY | 9 cut(s) | 121, 346, 577, 1206, 2288, 2647, 2720, 4859, 5059 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2069, 2101, 2334, 2366 |
| AseI | ATTAAT | 1 cut(s) | 1254 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 867, 1083 |
| AspA2I | CCTAGG | 1 cut(s) | 3541 |
| AspLEI | GCGC | 3 cut(s) | 1919, 2845, 4678 |
| AsuC2I | CCSGG | 1 cut(s) | 4003 |
| AsuNHI | GCTAGC | 1 cut(s) | 4171 |
| AvaI | CYCGRG | 3 cut(s) | 606, 3796, 3856 |
| AvaII | GGWCC | 6 cut(s) | 1477, 1486, 1554, 2544, 3231, 5356 |
| AvrII | CCTAGG | 1 cut(s) | 3541 |
| AxyI | CCTNAGG | 2 cut(s) | 873, 2178 |
| BaeGI | GKGCMC | 1 cut(s) | 500 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 5271, 5304 |
| BalI | TGGCCA | 1 cut(s) | 2235 |
| BamHI | GGATCC | 2 cut(s) | 3373, 5111 |
| BanI | GGYRCC | 2 cut(s) | 495, 5252 |
| BanII | GRGCYC | 1 cut(s) | 4129 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1977, 2009, 2475, 2507 |
| BauI | CACGAG | 1 cut(s) | 597 |
| BbrPI | CACGTG | 1 cut(s) | 5069 |
| BbsI | GAAGAC | 1 cut(s) | 968 |
| Bbv12I | GWGCWC | 2 cut(s) | 4781, 5122 |
| BbvCI | CCTCAGC | 3 cut(s) | 566, 1739, 2334 |
| BceAI | ACGGC | 2 cut(s) | 150, 2406 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4814, 4848 |
| BciVI | GTATCC | 2 cut(s) | 1141, 2560 |
| BclI | TGATCA | 2 cut(s) | 199, 1875 |
| BcnI | CCSGG | 1 cut(s) | 4003 |
| BcoDI | GTCTC | 9 cut(s) | 1345, 2164, 2510, 2798, 3979, 4050, 4366, 4467, 5330 |
| BcuI | ACTAGT | 1 cut(s) | 2324 |
| BfmI | CTRYAG | 3 cut(s) | 2052, 3840, 5680 |
| BfoI | RGCGCY | 2 cut(s) | 1920, 4679 |
| BfrI | CTTAAG | 1 cut(s) | 4184 |
| BfuAI | ACCTGC | 1 cut(s) | 5010 |
| BfuI | GTATCC | 2 cut(s) | 1141, 2560 |
| BglII | AGATCT | 1 cut(s) | 3058 |
| BlnI | CCTAGG | 1 cut(s) | 3541 |
| BlpI | GCTNAGC | 3 cut(s) | 405, 2190, 4278 |
| Bme18I | GGWCC | 6 cut(s) | 1477, 1486, 1554, 2544, 3231, 5356 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3971 |
| BmeT110I | CYCGRG | 3 cut(s) | 606, 3796, 3856 |
| BmgBI | CACGTC | 2 cut(s) | 3968, 5276 |
| BmiI | GGNNCC | 8 cut(s) | 497, 1660, 2420, 3375, 4126, 4476, 5113, 5254 |
| BmrI | ACTGGG | 2 cut(s) | 960, 1778 |
| BmtI | GCTAGC | 1 cut(s) | 4175 |
| BmuI | ACTGGG | 2 cut(s) | 960, 1778 |
| BpiI | GAAGAC | 1 cut(s) | 968 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3878, 3910 |
| BpmI | CTGGAG | 5 cut(s) | 3014, 3905, 4634, 4938, 4998 |
| Bpu10I | CCTNAGC | 4 cut(s) | 566, 1739, 2334, 4080 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 405, 2190, 4278 |
| BpuEI | CTTGAG | 3 cut(s) | 2090, 3132, 4645 |
| BpuMI | CCSGG | 1 cut(s) | 4003 |
| Bsa29I | ATCGAT | 3 cut(s) | 1250, 3203, 5451 |
| BsaAI | YACGTR | 2 cut(s) | 4066, 5069 |
| BsaBI | GATNNNNATC | 3 cut(s) | 651, 3447, 3711 |
| BsaHI | GRCGYC | 1 cut(s) | 2072 |
| BsaI | GGTCTC | 1 cut(s) | 1345 |
| BsaWI | WCCGGW | 2 cut(s) | 1479, 5353 |
| Bse21I | CCTNAGG | 2 cut(s) | 873, 2178 |
| Bse3DI | GCAATG | 7 cut(s) | 49, 280, 969, 1006, 2368, 3073, 3184 |
| Bse8I | GATNNNNATC | 3 cut(s) | 651, 3447, 3711 |
| BseCI | ATCGAT | 3 cut(s) | 1250, 3203, 5451 |
| BseJI | GATNNNNATC | 3 cut(s) | 651, 3447, 3711 |
| BseMI | GCAATG | 7 cut(s) | 49, 280, 969, 1006, 2368, 3073, 3184 |
| BseRI | GAGGAG | 7 cut(s) | 185, 296, 812, 971, 2528, 3645, 5594 |
| BseSI | GKGCMC | 1 cut(s) | 500 |
| BseYI | CCCAGC | 2 cut(s) | 956, 1655 |
| BsgI | GTGCAG | 2 cut(s) | 2102, 2845 |
| Bsh1236I | CGCG | 2 cut(s) | 1089, 5739 |
| BshNI | GGYRCC | 2 cut(s) | 495, 5252 |
| BshVI | ATCGAT | 3 cut(s) | 1250, 3203, 5451 |
| BsiHKAI | GWGCWC | 2 cut(s) | 4781, 5122 |
| BsiHKCI | CYCGRG | 3 cut(s) | 606, 3796, 3856 |
| BsiSI | CCGG | 4 cut(s) | 239, 1480, 4003, 5354 |
| BslFI | GGGAC | 5 cut(s) | 44, 653, 3383, 3982, 4193 |
| BsmAI | GTCTC | 9 cut(s) | 1345, 2164, 2510, 2798, 3979, 4050, 4366, 4467, 5330 |
| BsmBI | CGTCTC | 1 cut(s) | 4467 |
| BsmFI | GGGAC | 5 cut(s) | 44, 653, 3383, 3982, 4193 |
| BsmI | GAATGC | 4 cut(s) | 2503, 4809, 5524, 5777 |
| Bso31I | GGTCTC | 1 cut(s) | 1345 |
| BsoBI | CYCGRG | 3 cut(s) | 606, 3796, 3856 |
| Bsp1286I | GDGCHC | 4 cut(s) | 500, 4129, 4781, 5122 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 405, 2190, 4278 |
| Bsp68I | TCGCGA | 1 cut(s) | 1089 |
| BspDI | ATCGAT | 3 cut(s) | 1250, 3203, 5451 |
| BspFNI | CGCG | 2 cut(s) | 1089, 5739 |
| BspHI | TCATGA | 3 cut(s) | 1969, 4728, 5137 |
| BspLI | GGNNCC | 8 cut(s) | 497, 1660, 2420, 3375, 4126, 4476, 5113, 5254 |
| BspMAI | CTGCAG | 1 cut(s) | 3844 |
| BspMI | ACCTGC | 1 cut(s) | 5010 |
| BspOI | GCTAGC | 1 cut(s) | 4175 |
| BspQI | GCTCTTC | 4 cut(s) | 483, 843, 1662, 3130 |
| BspT107I | GGYRCC | 2 cut(s) | 495, 5252 |
| BspTI | CTTAAG | 1 cut(s) | 4184 |
| BspTNI | GGTCTC | 1 cut(s) | 1345 |
| BsrBI | CCGCTC | 1 cut(s) | 493 |
| BsrDI | GCAATG | 7 cut(s) | 49, 280, 969, 1006, 2368, 3073, 3184 |
| BssNI | GRCGYC | 1 cut(s) | 2072 |
| BssSI | CACGAG | 1 cut(s) | 597 |
| BssT1I | CCWWGG | 5 cut(s) | 1662, 3368, 3520, 3541, 5217 |
| Bst2BI | CACGAG | 1 cut(s) | 597 |
| Bst4CI | ACNGT | 9 cut(s) | 35, 215, 891, 2358, 2395, 2608, 3645, 4104, 5437 |
| BstACI | GRCGYC | 1 cut(s) | 2072 |
| BstAFI | CTTAAG | 1 cut(s) | 4184 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 4238, 5072 |
| BstBAI | YACGTR | 2 cut(s) | 4066, 5069 |
| BstDSI | CCRYGG | 2 cut(s) | 3402, 4120 |
| BstEII | GGTNACC | 1 cut(s) | 5326 |
| BstFNI | CGCG | 2 cut(s) | 1089, 5739 |
| BstH2I | RGCGCY | 2 cut(s) | 1920, 4679 |
| BstHHI | GCGC | 3 cut(s) | 1919, 2845, 4678 |
| BstMAI | GTCTC | 9 cut(s) | 1345, 2164, 2510, 2798, 3979, 4050, 4366, 4467, 5330 |
| BstNSI | RCATGY | 5 cut(s) | 1502, 2030, 2908, 3097, 4168 |
| BstPI | GGTNACC | 1 cut(s) | 5326 |
| BstSFI | CTRYAG | 3 cut(s) | 2052, 3840, 5680 |
| BstSLI | GKGCMC | 1 cut(s) | 500 |
| BstSNI | TACGTA | 1 cut(s) | 4066 |
| BstUI | CGCG | 2 cut(s) | 1089, 5739 |
| BstV2I | GAAGAC | 1 cut(s) | 968 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1121, 1685 |
| Bsu15I | ATCGAT | 3 cut(s) | 1250, 3203, 5451 |
| Bsu36I | CCTNAGG | 2 cut(s) | 873, 2178 |
| BsuI | GTATCC | 2 cut(s) | 1141, 2560 |
| BsuTUI | ATCGAT | 3 cut(s) | 1250, 3203, 5451 |
| BtgI | CCRYGG | 2 cut(s) | 3402, 4120 |
| BtrI | CACGTC | 2 cut(s) | 3968, 5276 |
| BtsI | GCAGTG | 1 cut(s) | 274 |
| BtsIMutI | CAGTG | 9 cut(s) | 40, 274, 1781, 2363, 2592, 2613, 4100, 5122, 5748 |
| BtuMI | TCGCGA | 1 cut(s) | 1089 |
| BveI | ACCTGC | 1 cut(s) | 5010 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1738, 5506 |
| CciI | TCATGA | 3 cut(s) | 1969, 4728, 5137 |
| CfoI | GCGC | 3 cut(s) | 1919, 2845, 4678 |
| ClaI | ATCGAT | 3 cut(s) | 1250, 3203, 5451 |
| CpoI | CGGWCCG | 1 cut(s) | 5356 |
| CseI | GACGC | 2 cut(s) | 2080, 3569 |
| CsiI | ACCWGGT | 1 cut(s) | 2599 |
| Csp6I | GTAC | 5 cut(s) | 2604, 2701, 3750, 3889, 4094 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 5680, 5715 |
| CspI | CGGWCCG | 1 cut(s) | 5356 |
| CviQI | GTAC | 5 cut(s) | 2604, 2701, 3750, 3889, 4094 |
| DraI | TTTAAA | 1 cut(s) | 5535 |
| DraIII | CACNNNGTG | 2 cut(s) | 1288, 1763 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3971 |
| EaeI | YGGCCR | 1 cut(s) | 2233 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3971 |
| Eco105I | TACGTA | 1 cut(s) | 4066 |
| Eco130I | CCWWGG | 5 cut(s) | 1662, 3368, 3520, 3541, 5217 |
| Eco147I | AGGCCT | 1 cut(s) | 595 |
| Eco24I | GRGCYC | 1 cut(s) | 4129 |
| Eco31I | GGTCTC | 1 cut(s) | 1345 |
| Eco47I | GGWCC | 6 cut(s) | 1477, 1486, 1554, 2544, 3231, 5356 |
| Eco47III | AGCGCT | 1 cut(s) | 4677 |
| Eco57I | CTGAAG | 6 cut(s) | 867, 875, 3030, 5268, 5412, 5574 |
| Eco72I | CACGTG | 1 cut(s) | 5069 |
| Eco81I | CCTNAGG | 2 cut(s) | 873, 2178 |
| Eco88I | CYCGRG | 3 cut(s) | 606, 3796, 3856 |
| Eco91I | GGTNACC | 1 cut(s) | 5326 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1486, 2816, 4873 |
| EcoO65I | GGTNACC | 1 cut(s) | 5326 |
| EcoRI | GAATTC | 1 cut(s) | 577 |
| EcoT14I | CCWWGG | 5 cut(s) | 1662, 3368, 3520, 3541, 5217 |
| EcoT22I | ATGCAT | 1 cut(s) | 5352 |
| EcoT38I | GRGCYC | 1 cut(s) | 4129 |
| ErhI | CCWWGG | 5 cut(s) | 1662, 3368, 3520, 3541, 5217 |
| Esp3I | CGTCTC | 1 cut(s) | 4467 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1044, 1076, 3858, 3890, 4344, 4376, 4862, 4894 |
| FaqI | GGGAC | 5 cut(s) | 44, 653, 3383, 3982, 4193 |
| FauI | CCCGC | 1 cut(s) | 185 |
| FauNDI | CATATG | 2 cut(s) | 3898, 5648 |
| FbaI | TGATCA | 2 cut(s) | 199, 1875 |
| FblI | GTMKAC | 1 cut(s) | 3114 |
| FriOI | GRGCYC | 1 cut(s) | 4129 |
| FspI | TGCGCA | 1 cut(s) | 2844 |
| GlaI | GCGC | 3 cut(s) | 1918, 2844, 4677 |
| GsaI | CCCAGC | 2 cut(s) | 960, 1659 |
| GsuI | CTGGAG | 5 cut(s) | 3014, 3905, 4634, 4938, 4998 |
| HaeII | RGCGCY | 2 cut(s) | 1920, 4679 |
| HapII | CCGG | 4 cut(s) | 239, 1480, 4003, 5354 |
| HgaI | GACGC | 2 cut(s) | 2080, 3569 |
| HhaI | GCGC | 3 cut(s) | 1919, 2845, 4678 |
| Hin1I | GRCGYC | 1 cut(s) | 2072 |
| Hin6I | GCGC | 3 cut(s) | 1917, 2843, 4676 |
| HinP1I | GCGC | 3 cut(s) | 1917, 2843, 4676 |
| HincII | GTYRAC | 5 cut(s) | 1387, 1723, 2950, 5025, 5050 |
| HindII | GTYRAC | 5 cut(s) | 1387, 1723, 2950, 5025, 5050 |
| HindIII | AAGCTT | 3 cut(s) | 2224, 2774, 3660 |
| HpaI | GTTAAC | 3 cut(s) | 1387, 1723, 5050 |
| HpaII | CCGG | 4 cut(s) | 239, 1480, 4003, 5354 |
| Hpy99I | CGWCG | 1 cut(s) | 4557 |
| HpyCH4III | ACNGT | 9 cut(s) | 35, 215, 891, 2358, 2395, 2608, 3645, 4104, 5437 |
| HpyCH4IV | ACGT | 6 cut(s) | 1962, 3967, 4065, 5068, 5275, 5726 |
| HpySE526I | ACGT | 6 cut(s) | 1962, 3967, 4065, 5068, 5275, 5726 |
| Hsp92I | GRCGYC | 1 cut(s) | 2072 |
| HspAI | GCGC | 3 cut(s) | 1917, 2843, 4676 |
| Ksp22I | TGATCA | 2 cut(s) | 199, 1875 |
| KspAI | GTTAAC | 3 cut(s) | 1387, 1723, 5050 |
| LguI | GCTCTTC | 4 cut(s) | 483, 843, 1662, 3130 |
| MabI | ACCWGGT | 1 cut(s) | 2599 |
| MaeII | ACGT | 6 cut(s) | 1962, 3967, 4065, 5068, 5275, 5726 |
| MbiI | CCGCTC | 1 cut(s) | 493 |
| MfeI | CAATTG | 2 cut(s) | 896, 2280 |
| MhlI | GDGCHC | 4 cut(s) | 500, 4129, 4781, 5122 |
| MlsI | TGGCCA | 1 cut(s) | 2235 |
| MluNI | TGGCCA | 1 cut(s) | 2235 |
| MlyI | GAGTC | 6 cut(s) | 3139, 4052, 4543, 4562, 4647, 5807 |
| MmeI | TCCRAC | 5 cut(s) | 566, 2638, 3638, 4720, 4920 |
| Mox20I | TGGCCA | 1 cut(s) | 2235 |
| Mph1103I | ATGCAT | 1 cut(s) | 5352 |
| MroXI | GAANNNNTTC | 2 cut(s) | 867, 1083 |
| MscI | TGGCCA | 1 cut(s) | 2235 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1119, 1156, 2031, 2144 |
| Msp20I | TGGCCA | 1 cut(s) | 2235 |
| MspA1I | CMGCKG | 4 cut(s) | 565, 3788, 4936, 5552 |
| MspCI | CTTAAG | 1 cut(s) | 4184 |
| MspI | CCGG | 4 cut(s) | 239, 1480, 4003, 5354 |
| MunI | CAATTG | 2 cut(s) | 896, 2280 |
| Mva1269I | GAATGC | 4 cut(s) | 2503, 4809, 5524, 5777 |
| MvnI | CGCG | 2 cut(s) | 1089, 5739 |
| NciI | CCSGG | 1 cut(s) | 4003 |
| NdeI | CATATG | 2 cut(s) | 3898, 5648 |
| NheI | GCTAGC | 1 cut(s) | 4171 |
| NlaIV | GGNNCC | 8 cut(s) | 497, 1660, 2420, 3375, 4126, 4476, 5113, 5254 |
| NmeAIII | GCCGAG | 2 cut(s) | 5795, 5817 |
| NruI | TCGCGA | 1 cut(s) | 1089 |
| NsbI | TGCGCA | 1 cut(s) | 2844 |
| NsiI | ATGCAT | 1 cut(s) | 5352 |
| NspI | RCATGY | 5 cut(s) | 1502, 2030, 2908, 3097, 4168 |
| OliI | CACNNNNGTG | 1 cut(s) | 1119 |
| PaeI | GCATGC | 1 cut(s) | 4168 |
| PagI | TCATGA | 3 cut(s) | 1969, 4728, 5137 |
| PceI | AGGCCT | 1 cut(s) | 595 |
| PciI | ACATGT | 1 cut(s) | 3093 |
| PciSI | GCTCTTC | 4 cut(s) | 483, 843, 1662, 3130 |
| PctI | GAATGC | 4 cut(s) | 2503, 4809, 5524, 5777 |
| PdmI | GAANNNNTTC | 2 cut(s) | 867, 1083 |
| PflMI | CCANNNNNTGG | 7 cut(s) | 1551, 2887, 2978, 3369, 3620, 4106, 4916 |
| PleI | GAGTC | 6 cut(s) | 3139, 4051, 4543, 4562, 4646, 5807 |
| PmaCI | CACGTG | 1 cut(s) | 5069 |
| PmlI | CACGTG | 1 cut(s) | 5069 |
| PpsI | GAGTC | 6 cut(s) | 3139, 4051, 4543, 4562, 4646, 5807 |
| Ppu21I | YACGTR | 2 cut(s) | 4066, 5069 |
| PpuMI | RGGWCCY | 1 cut(s) | 1486 |
| PscI | ACATGT | 1 cut(s) | 3093 |
| PshBI | ATTAAT | 1 cut(s) | 1254 |
| PsiI | TTATAA | 1 cut(s) | 1238 |
| Psp5II | RGGWCCY | 1 cut(s) | 1486 |
| PspCI | CACGTG | 1 cut(s) | 5069 |
| PspEI | GGTNACC | 1 cut(s) | 5326 |
| PspFI | CCCAGC | 2 cut(s) | 956, 1655 |
| PspN4I | GGNNCC | 8 cut(s) | 497, 1660, 2420, 3375, 4126, 4476, 5113, 5254 |
| PspPPI | RGGWCCY | 1 cut(s) | 1486 |
| PstI | CTGCAG | 1 cut(s) | 3844 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1738, 5506 |
| PvuII | CAGCTG | 3 cut(s) | 565, 3788, 5552 |
| RruI | TCGCGA | 1 cut(s) | 1089 |
| RsaI | GTAC | 5 cut(s) | 2605, 2702, 3751, 3890, 4095 |
| RsaNI | GTAC | 5 cut(s) | 2604, 2701, 3750, 3889, 4094 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1119, 1156, 2031, 2144 |
| Rsr2I | CGGWCCG | 1 cut(s) | 5356 |
| RsrII | CGGWCCG | 1 cut(s) | 5356 |
| SapI | GCTCTTC | 4 cut(s) | 483, 843, 1662, 3130 |
| SchI | GAGTC | 6 cut(s) | 3139, 4052, 4543, 4562, 4647, 5807 |
| SduI | GDGCHC | 4 cut(s) | 500, 4129, 4781, 5122 |
| SexAI | ACCWGGT | 1 cut(s) | 2599 |
| SfcI | CTRYAG | 3 cut(s) | 2052, 3840, 5680 |
| SinI | GGWCC | 6 cut(s) | 1477, 1486, 1554, 2544, 3231, 5356 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1119, 1156, 2031, 2144 |
| SmlI | CTYRAG | 4 cut(s) | 2105, 3147, 4184, 4624 |
| SmoI | CTYRAG | 4 cut(s) | 2105, 3147, 4184, 4624 |
| SnaBI | TACGTA | 1 cut(s) | 4066 |
| SpeI | ACTAGT | 1 cut(s) | 2324 |
| SphI | GCATGC | 1 cut(s) | 4168 |
| SseBI | AGGCCT | 1 cut(s) | 595 |
| SspI | AATATT | 3 cut(s) | 2765, 3025, 4855 |
| StuI | AGGCCT | 1 cut(s) | 595 |
| StyI | CCWWGG | 5 cut(s) | 1662, 3368, 3520, 3541, 5217 |
| TaaI | ACNGT | 9 cut(s) | 35, 215, 891, 2358, 2395, 2608, 3645, 4104, 5437 |
| TaiI | ACGT | 6 cut(s) | 1965, 3970, 4068, 5071, 5278, 5729 |
| TaqII | GACCGA | 2 cut(s) | 2561, 5042 |
| TatI | WGTACW | 3 cut(s) | 3749, 3888, 4093 |
| TauI | GCSGC | 3 cut(s) | 17, 3721, 4475 |
| TscAI | CASTG | 9 cut(s) | 40, 274, 1781, 2363, 2592, 2613, 4107, 5122, 5755 |
| TspGWI | ACGGA | 8 cut(s) | 1447, 2120, 2509, 2539, 4109, 4449, 4570, 5348 |
| TspRI | CASTG | 9 cut(s) | 40, 274, 1781, 2363, 2592, 2613, 4107, 5122, 5755 |
| Van91I | CCANNNNNTGG | 7 cut(s) | 1551, 2887, 2978, 3369, 3620, 4106, 4916 |
| Vha464I | CTTAAG | 1 cut(s) | 4184 |
| VpaK11BI | GGWCC | 6 cut(s) | 1477, 1486, 1554, 2544, 3231, 5356 |
| VspI | ATTAAT | 1 cut(s) | 1254 |
| XapI | RAATTY | 9 cut(s) | 121, 346, 577, 1206, 2288, 2647, 2720, 4859, 5059 |
| XbaI | TCTAGA | 1 cut(s) | 1616 |
| XceI | RCATGY | 5 cut(s) | 1502, 2030, 2908, 3097, 4168 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3617 |
| XmaJI | CCTAGG | 1 cut(s) | 3541 |
| XmiI | GTMKAC | 1 cut(s) | 3114 |
| XmnI | GAANNNNTTC | 2 cut(s) | 867, 1083 |
| Zsp2I | ATGCAT | 1 cut(s) | 5352 |