Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_hydro_35 | PF01301 | 214 - 264 | 5.1e-06 | Glycosyl hydrolases family 35 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 201 |
| Acc36I | ACCTGC | 1 cut(s) | 694 |
| AccB1I | GGYRCC | 3 cut(s) | 17, 139, 248 |
| AclWI | GGATC | 2 cut(s) | 122, 135 |
| AcoI | YGGCCR | 1 cut(s) | 778 |
| AcsI | RAATTY | 3 cut(s) | 241, 659, 772 |
| AcuI | CTGAAG | 1 cut(s) | 288 |
| AfaI | GTAC | 3 cut(s) | 155, 274, 758 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 787 |
| AgsI | TTSAA | 4 cut(s) | 263, 410, 486, 708 |
| AluBI | AGCT | 1 cut(s) | 266 |
| AluI | AGCT | 1 cut(s) | 266 |
| AlwI | GGATC | 2 cut(s) | 122, 135 |
| AoxI | GGCC | 1 cut(s) | 778 |
| ApeKI | GCWGC | 2 cut(s) | 31, 517 |
| ApoI | RAATTY | 3 cut(s) | 241, 659, 772 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 535 |
| BamHI | GGATCC | 1 cut(s) | 127 |
| BanI | GGYRCC | 3 cut(s) | 17, 139, 248 |
| BbvI | GCAGC | 2 cut(s) | 18, 529 |
| BccI | CCATC | 2 cut(s) | 227, 284 |
| BclI | TGATCA | 1 cut(s) | 205 |
| BfaI | CTAG | 2 cut(s) | 809, 832 |
| BfmI | CTRYAG | 2 cut(s) | 504, 551 |
| BfuAI | ACCTGC | 1 cut(s) | 694 |
| BisI | GCNGC | 2 cut(s) | 32, 518 |
| BlsI | GCNGC | 2 cut(s) | 33, 519 |
| BmiI | GGNNCC | 4 cut(s) | 19, 129, 141, 250 |
| BmsI | GCATC | 4 cut(s) | 193, 338, 605, 813 |
| BpuEI | CTTGAG | 1 cut(s) | 568 |
| BsaBI | GATNNNNATC | 1 cut(s) | 827 |
| BsaJI | CCNNGG | 1 cut(s) | 760 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 787 |
| Bse118I | RCCGGY | 1 cut(s) | 251 |
| Bse1I | ACTGG | 1 cut(s) | 131 |
| Bse3DI | GCAATG | 2 cut(s) | 512, 800 |
| Bse8I | GATNNNNATC | 1 cut(s) | 827 |
| BseDI | CCNNGG | 1 cut(s) | 760 |
| BseGI | GGATG | 1 cut(s) | 620 |
| BseJI | GATNNNNATC | 1 cut(s) | 827 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 787 |
| BseMI | GCAATG | 2 cut(s) | 512, 800 |
| BseMII | CTCAG | 1 cut(s) | 504 |
| BseNI | ACTGG | 1 cut(s) | 131 |
| BseXI | GCAGC | 2 cut(s) | 18, 529 |
| BsgI | GTGCAG | 2 cut(s) | 361, 672 |
| BshFI | GGCC | 1 cut(s) | 780 |
| BshNI | GGYRCC | 3 cut(s) | 17, 139, 248 |
| BsiSI | CCGG | 1 cut(s) | 252 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 787 |
| BsmI | GAATGC | 1 cut(s) | 789 |
| BsnI | GGCC | 1 cut(s) | 780 |
| Bsp143I | GATC | 2 cut(s) | 127, 205 |
| Bsp19I | CCATGG | 1 cut(s) | 760 |
| BspANI | GGCC | 1 cut(s) | 780 |
| BspCNI | CTCAG | 1 cut(s) | 503 |
| BspLI | GGNNCC | 4 cut(s) | 19, 129, 141, 250 |
| BspMAI | CTGCAG | 1 cut(s) | 555 |
| BspMI | ACCTGC | 1 cut(s) | 694 |
| BspPI | GGATC | 2 cut(s) | 122, 135 |
| BspT107I | GGYRCC | 3 cut(s) | 17, 139, 248 |
| BsrDI | GCAATG | 2 cut(s) | 512, 800 |
| BsrFI | RCCGGY | 1 cut(s) | 251 |
| BsrI | ACTGG | 1 cut(s) | 131 |
| BssAI | RCCGGY | 1 cut(s) | 251 |
| BssECI | CCNNGG | 1 cut(s) | 760 |
| BssMI | GATC | 2 cut(s) | 127, 205 |
| BssT1I | CCWWGG | 1 cut(s) | 760 |
| Bst4CI | ACNGT | 5 cut(s) | 98, 121, 277, 454, 460 |
| BstC8I | GCNNGC | 1 cut(s) | 789 |
| BstDEI | CTNAG | 2 cut(s) | 333, 490 |
| BstDSI | CCRYGG | 1 cut(s) | 760 |
| BstF5I | GGATG | 1 cut(s) | 620 |
| BstKTI | GATC | 2 cut(s) | 130, 208 |
| BstMBI | GATC | 2 cut(s) | 127, 205 |
| BstSFI | CTRYAG | 2 cut(s) | 504, 551 |
| BstV1I | GCAGC | 2 cut(s) | 18, 529 |
| BstX2I | RGATCY | 1 cut(s) | 127 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 641 |
| BstYI | RGATCY | 1 cut(s) | 127 |
| BsuRI | GGCC | 1 cut(s) | 780 |
| BtgI | CCRYGG | 1 cut(s) | 760 |
| BtsCI | GGATG | 1 cut(s) | 620 |
| BtsI | GCAGTG | 1 cut(s) | 373 |
| BtsIMutI | CAGTG | 3 cut(s) | 373, 450, 477 |
| BveI | ACCTGC | 1 cut(s) | 694 |
| Cac8I | GCNNGC | 1 cut(s) | 789 |
| Cfr10I | RCCGGY | 1 cut(s) | 251 |
| Csp6I | GTAC | 3 cut(s) | 154, 273, 757 |
| CviAII | CATG | 3 cut(s) | 188, 761, 814 |
| CviJI | RGCY | 4 cut(s) | 266, 357, 780, 812 |
| CviKI_1 | RGCY | 4 cut(s) | 266, 357, 780, 812 |
| CviQI | GTAC | 3 cut(s) | 154, 273, 757 |
| DdeI | CTNAG | 2 cut(s) | 333, 490 |
| DpnI | GATC | 2 cut(s) | 129, 207 |
| DpnII | GATC | 2 cut(s) | 127, 205 |
| DraI | TTTAAA | 1 cut(s) | 609 |
| EaeI | YGGCCR | 1 cut(s) | 778 |
| Eco130I | CCWWGG | 1 cut(s) | 760 |
| Eco57I | CTGAAG | 1 cut(s) | 288 |
| EcoT14I | CCWWGG | 1 cut(s) | 760 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 760 |
| FaeI | CATG | 3 cut(s) | 191, 764, 817 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 523, 555 |
| FatI | CATG | 3 cut(s) | 187, 760, 813 |
| FbaI | TGATCA | 1 cut(s) | 205 |
| Fnu4HI | GCNGC | 2 cut(s) | 32, 518 |
| FokI | GGATG | 1 cut(s) | 627 |
| Fsp4HI | GCNGC | 2 cut(s) | 32, 518 |
| FspBI | CTAG | 2 cut(s) | 809, 832 |
| GluI | GCNGC | 2 cut(s) | 32, 518 |
| HaeIII | GGCC | 1 cut(s) | 780 |
| HapII | CCGG | 1 cut(s) | 252 |
| Hin1II | CATG | 3 cut(s) | 191, 764, 817 |
| HinfI | GANTC | 2 cut(s) | 110, 482 |
| HpaII | CCGG | 1 cut(s) | 252 |
| Hpy166II | GTNNAC | 1 cut(s) | 477 |
| Hpy188I | TCNGA | 7 cut(s) | 85, 109, 240, 385, 417, 468, 493 |
| Hpy188III | TCNNGA | 2 cut(s) | 209, 312 |
| Hpy8I | GTNNAC | 1 cut(s) | 477 |
| HpyAV | CCTTC | 1 cut(s) | 263 |
| HpyCH4III | ACNGT | 5 cut(s) | 98, 121, 277, 454, 460 |
| HpyCH4IV | ACGT | 2 cut(s) | 325, 402 |
| HpyF3I | CTNAG | 2 cut(s) | 333, 490 |
| HpySE526I | ACGT | 2 cut(s) | 325, 402 |
| Hsp92II | CATG | 3 cut(s) | 191, 764, 817 |
| Ksp22I | TGATCA | 1 cut(s) | 205 |
| Kzo9I | GATC | 2 cut(s) | 127, 205 |
| LpnPI | CCDG | 7 cut(s) | 144, 265, 267, 677, 699, 767, 773 |
| Lsp1109I | GCAGC | 2 cut(s) | 18, 529 |
| LweI | GCATC | 4 cut(s) | 193, 338, 605, 813 |
| MaeI | CTAG | 2 cut(s) | 809, 832 |
| MaeII | ACGT | 2 cut(s) | 325, 402 |
| MaeIII | GTNAC | 3 cut(s) | 174, 454, 793 |
| MalI | GATC | 2 cut(s) | 129, 207 |
| MboI | GATC | 2 cut(s) | 127, 205 |
| MboII | GAAGA | 1 cut(s) | 531 |
| MfeI | CAATTG | 2 cut(s) | 619, 708 |
| MflI | RGATCY | 1 cut(s) | 127 |
| MnlI | CCTC | 3 cut(s) | 144, 563, 758 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 535 |
| MseI | TTAA | 4 cut(s) | 116, 462, 575, 608 |
| MslI | CAYNNNNRTG | 1 cut(s) | 818 |
| MspI | CCGG | 1 cut(s) | 252 |
| MunI | CAATTG | 2 cut(s) | 619, 708 |
| Mva1269I | GAATGC | 1 cut(s) | 789 |
| NcoI | CCATGG | 1 cut(s) | 760 |
| NdeII | GATC | 2 cut(s) | 127, 205 |
| NlaIII | CATG | 3 cut(s) | 191, 764, 817 |
| NlaIV | GGNNCC | 4 cut(s) | 19, 129, 141, 250 |
| NmuCI | GTSAC | 1 cut(s) | 793 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| PctI | GAATGC | 1 cut(s) | 789 |
| PdmI | GAANNNNTTC | 1 cut(s) | 535 |
| PfeI | GAWTC | 2 cut(s) | 110, 482 |
| PkrI | GCNGC | 2 cut(s) | 33, 519 |
| PsiI | TTATAA | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 4 cut(s) | 19, 129, 141, 250 |
| PstI | CTGCAG | 1 cut(s) | 555 |
| PsuI | RGATCY | 1 cut(s) | 127 |
| RsaI | GTAC | 3 cut(s) | 155, 274, 758 |
| RsaNI | GTAC | 3 cut(s) | 154, 273, 757 |
| RseI | CAYNNNNRTG | 1 cut(s) | 818 |
| SaqAI | TTAA | 4 cut(s) | 116, 462, 575, 608 |
| SatI | GCNGC | 2 cut(s) | 32, 518 |
| Sau3AI | GATC | 2 cut(s) | 127, 205 |
| SetI | ASST | 9 cut(s) | 155, 268, 274, 328, 405, 574, 688, 719, 756 |
| SfaNI | GCATC | 4 cut(s) | 193, 338, 605, 813 |
| SfcI | CTRYAG | 2 cut(s) | 504, 551 |
| SmiI | ATTTAAAT | 1 cut(s) | 609 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 818 |
| SmlI | CTYRAG | 1 cut(s) | 583 |
| SmoI | CTYRAG | 1 cut(s) | 583 |
| SspMI | CTAG | 2 cut(s) | 809, 832 |
| StyI | CCWWGG | 1 cut(s) | 760 |
| SwaI | ATTTAAAT | 1 cut(s) | 609 |
| TaaI | ACNGT | 5 cut(s) | 98, 121, 277, 454, 460 |
| TaiI | ACGT | 2 cut(s) | 328, 405 |
| TfiI | GAWTC | 2 cut(s) | 110, 482 |
| Tru1I | TTAA | 4 cut(s) | 116, 462, 575, 608 |
| Tru9I | TTAA | 4 cut(s) | 116, 462, 575, 608 |
| TscAI | CASTG | 3 cut(s) | 380, 457, 484 |
| TseFI | GTSAC | 1 cut(s) | 793 |
| TseI | GCWGC | 2 cut(s) | 31, 517 |
| Tsp45I | GTSAC | 1 cut(s) | 793 |
| TspDTI | ATGAA | 5 cut(s) | 60, 453, 576, 785, 789 |
| TspRI | CASTG | 3 cut(s) | 380, 457, 484 |
| XapI | RAATTY | 3 cut(s) | 241, 659, 772 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 61 |
| XmnI | GAANNNNTTC | 1 cut(s) | 535 |
| XspI | CTAG | 2 cut(s) | 809, 832 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |