Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 213, 529 |
| Acc36I | ACCTGC | 3 cut(s) | 213, 444, 529 |
| Acc65I | GGTACC | 1 cut(s) | 265 |
| AccB1I | GGYRCC | 1 cut(s) | 265 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 474 |
| AccBSI | CCGCTC | 1 cut(s) | 389 |
| AciI | CCGC | 2 cut(s) | 374, 389 |
| AclI | AACGTT | 1 cut(s) | 62 |
| AclWI | GGATC | 3 cut(s) | 44, 78, 327 |
| AcoI | YGGCCR | 3 cut(s) | 89, 160, 465 |
| AcsI | RAATTY | 1 cut(s) | 478 |
| AcvI | CACGTG | 1 cut(s) | 235 |
| AdeI | CACNNNGTG | 2 cut(s) | 235, 474 |
| AfaI | GTAC | 3 cut(s) | 267, 307, 517 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 211, 474, 495 |
| AgsI | TTSAA | 3 cut(s) | 67, 143, 549 |
| AjnI | CCWGG | 1 cut(s) | 470 |
| AluBI | AGCT | 4 cut(s) | 21, 461, 509, 553 |
| AluI | AGCT | 4 cut(s) | 21, 461, 509, 553 |
| Alw21I | GWGCWC | 2 cut(s) | 82, 204 |
| Alw44I | GTGCAC | 2 cut(s) | 78, 200 |
| AlwI | GGATC | 3 cut(s) | 44, 78, 327 |
| AoxI | GGCC | 4 cut(s) | 89, 160, 377, 465 |
| ApaLI | GTGCAC | 2 cut(s) | 78, 200 |
| ApoI | RAATTY | 1 cut(s) | 478 |
| Asp718I | GGTACC | 1 cut(s) | 265 |
| AspS9I | GGNCC | 2 cut(s) | 377, 391 |
| AsuC2I | CCSGG | 2 cut(s) | 286, 310 |
| AsuHPI | GGTGA | 1 cut(s) | 274 |
| AvaII | GGWCC | 1 cut(s) | 391 |
| BaeGI | GKGCMC | 3 cut(s) | 82, 204, 218 |
| BalI | TGGCCA | 2 cut(s) | 162, 467 |
| BanI | GGYRCC | 1 cut(s) | 265 |
| BbrPI | CACGTG | 1 cut(s) | 235 |
| Bbv12I | GWGCWC | 2 cut(s) | 82, 204 |
| BccI | CCATC | 3 cut(s) | 152, 205, 277 |
| BciT130I | CCWGG | 1 cut(s) | 472 |
| BcnI | CCSGG | 2 cut(s) | 286, 310 |
| BfaI | CTAG | 3 cut(s) | 219, 261, 303 |
| BfmI | CTRYAG | 2 cut(s) | 168, 206 |
| BfuAI | ACCTGC | 3 cut(s) | 213, 444, 529 |
| BglII | AGATCT | 1 cut(s) | 343 |
| BlpI | GCTNAGC | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 3 cut(s) | 286, 310, 472 |
| Bme18I | GGWCC | 1 cut(s) | 391 |
| BmgT120I | GGNCC | 2 cut(s) | 377, 391 |
| BmiI | GGNNCC | 3 cut(s) | 267, 378, 452 |
| BmrFI | CCNGG | 3 cut(s) | 286, 310, 472 |
| BmsI | GCATC | 2 cut(s) | 37, 229 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 17 |
| BpuMI | CCSGG | 2 cut(s) | 286, 310 |
| BsaAI | YACGTR | 2 cut(s) | 116, 235 |
| BsaBI | GATNNNNATC | 1 cut(s) | 579 |
| BsaJI | CCNNGG | 2 cut(s) | 309, 454 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 211, 474, 495 |
| Bse1I | ACTGG | 1 cut(s) | 163 |
| Bse8I | GATNNNNATC | 1 cut(s) | 579 |
| BseBI | CCWGG | 1 cut(s) | 472 |
| BseDI | CCNNGG | 2 cut(s) | 309, 454 |
| BseGI | GGATG | 2 cut(s) | 10, 244 |
| BseJI | GATNNNNATC | 1 cut(s) | 579 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 211, 474, 495 |
| BseMII | CTCAG | 3 cut(s) | 31, 354, 397 |
| BseNI | ACTGG | 1 cut(s) | 163 |
| BseSI | GKGCMC | 3 cut(s) | 82, 204, 218 |
| BshFI | GGCC | 4 cut(s) | 91, 162, 379, 467 |
| BshNI | GGYRCC | 1 cut(s) | 265 |
| BsiHKAI | GWGCWC | 2 cut(s) | 82, 204 |
| BsiSI | CCGG | 2 cut(s) | 285, 309 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 211, 474, 495 |
| BsmI | GAATGC | 1 cut(s) | 544 |
| BsnI | GGCC | 4 cut(s) | 91, 162, 379, 467 |
| Bsp1286I | GDGCHC | 3 cut(s) | 82, 204, 218 |
| Bsp1407I | TGTACA | 1 cut(s) | 515 |
| Bsp143I | GATC | 5 cut(s) | 36, 70, 319, 343, 580 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 17 |
| Bsp19I | CCATGG | 1 cut(s) | 454 |
| BspACI | CCGC | 2 cut(s) | 374, 389 |
| BspANI | GGCC | 4 cut(s) | 91, 162, 379, 467 |
| BspCNI | CTCAG | 3 cut(s) | 30, 355, 396 |
| BspLI | GGNNCC | 3 cut(s) | 267, 378, 452 |
| BspMAI | CTGCAG | 2 cut(s) | 172, 210 |
| BspMI | ACCTGC | 3 cut(s) | 213, 444, 529 |
| BspPI | GGATC | 3 cut(s) | 44, 78, 327 |
| BspT107I | GGYRCC | 1 cut(s) | 265 |
| BsrBI | CCGCTC | 1 cut(s) | 389 |
| BsrGI | TGTACA | 1 cut(s) | 515 |
| BsrI | ACTGG | 1 cut(s) | 163 |
| BssECI | CCNNGG | 2 cut(s) | 309, 454 |
| BssMI | GATC | 5 cut(s) | 36, 70, 319, 343, 580 |
| BssT1I | CCWWGG | 1 cut(s) | 454 |
| Bst2UI | CCWGG | 1 cut(s) | 472 |
| Bst4CI | ACNGT | 2 cut(s) | 55, 395 |
| Bst6I | CTCTTC | 1 cut(s) | 597 |
| BstAUI | TGTACA | 1 cut(s) | 515 |
| BstBAI | YACGTR | 2 cut(s) | 116, 235 |
| BstC8I | GCNNGC | 1 cut(s) | 172 |
| BstDEI | CTNAG | 6 cut(s) | 17, 152, 338, 363, 383, 494 |
| BstDSI | CCRYGG | 1 cut(s) | 454 |
| BstF5I | GGATG | 2 cut(s) | 10, 244 |
| BstKTI | GATC | 5 cut(s) | 39, 73, 322, 346, 583 |
| BstMBI | GATC | 5 cut(s) | 36, 70, 319, 343, 580 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 27, 550 |
| BstNI | CCWGG | 1 cut(s) | 472 |
| BstSCI | CCNGG | 3 cut(s) | 284, 308, 470 |
| BstSFI | CTRYAG | 2 cut(s) | 168, 206 |
| BstSLI | GKGCMC | 3 cut(s) | 82, 204, 218 |
| BstX2I | RGATCY | 3 cut(s) | 36, 70, 343 |
| BstYI | RGATCY | 3 cut(s) | 36, 70, 343 |
| BsuRI | GGCC | 4 cut(s) | 91, 162, 379, 467 |
| BtgI | CCRYGG | 1 cut(s) | 454 |
| BtsCI | GGATG | 2 cut(s) | 10, 244 |
| BtsI | GCAGTG | 1 cut(s) | 153 |
| BtsIMutI | CAGTG | 1 cut(s) | 153 |
| BveI | ACCTGC | 3 cut(s) | 213, 444, 529 |
| Cac8I | GCNNGC | 1 cut(s) | 172 |
| Cfr13I | GGNCC | 2 cut(s) | 377, 391 |
| CpoI | CGGWCCG | 1 cut(s) | 391 |
| CsiI | ACCWGGT | 1 cut(s) | 470 |
| Csp6I | GTAC | 3 cut(s) | 266, 306, 516 |
| CspI | CGGWCCG | 1 cut(s) | 391 |
| CviAII | CATG | 5 cut(s) | 137, 273, 455, 525, 584 |
| CviQI | GTAC | 3 cut(s) | 266, 306, 516 |
| DdeI | CTNAG | 6 cut(s) | 17, 152, 338, 363, 383, 494 |
| DpnI | GATC | 5 cut(s) | 38, 72, 321, 345, 582 |
| DpnII | GATC | 5 cut(s) | 36, 70, 319, 343, 580 |
| DraIII | CACNNNGTG | 2 cut(s) | 235, 474 |
| EaeI | YGGCCR | 3 cut(s) | 89, 160, 465 |
| Eam1104I | CTCTTC | 1 cut(s) | 597 |
| EarI | CTCTTC | 1 cut(s) | 597 |
| Eco130I | CCWWGG | 1 cut(s) | 454 |
| Eco47I | GGWCC | 1 cut(s) | 391 |
| Eco72I | CACGTG | 1 cut(s) | 235 |
| EcoO109I | RGGNCCY | 1 cut(s) | 377 |
| EcoRI | GAATTC | 1 cut(s) | 478 |
| EcoRII | CCWGG | 1 cut(s) | 470 |
| EcoT14I | CCWWGG | 1 cut(s) | 454 |
| ErhI | CCWWGG | 1 cut(s) | 454 |
| FaeI | CATG | 5 cut(s) | 140, 276, 458, 528, 587 |
| FaiI | YATR | 8 cut(s) | 138, 274, 294, 300, 456, 464, 526, 585 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 135, 167 |
| FatI | CATG | 5 cut(s) | 136, 272, 454, 524, 583 |
| FauI | CCCGC | 1 cut(s) | 367 |
| FokI | GGATG | 2 cut(s) | 17, 251 |
| FspBI | CTAG | 3 cut(s) | 219, 261, 303 |
| HaeIII | GGCC | 4 cut(s) | 91, 162, 379, 467 |
| HapII | CCGG | 2 cut(s) | 285, 309 |
| Hin1II | CATG | 5 cut(s) | 140, 276, 458, 528, 587 |
| HindIII | AAGCTT | 1 cut(s) | 551 |
| HinfI | GANTC | 4 cut(s) | 257, 279, 359, 575 |
| HpaII | CCGG | 2 cut(s) | 285, 309 |
| HphI | GGTGA | 1 cut(s) | 274 |
| Hpy166II | GTNNAC | 3 cut(s) | 80, 202, 518 |
| Hpy188I | TCNGA | 7 cut(s) | 59, 364, 386, 399, 484, 574, 580 |
| Hpy188III | TCNNGA | 2 cut(s) | 356, 413 |
| Hpy8I | GTNNAC | 3 cut(s) | 80, 202, 518 |
| HpyAV | CCTTC | 2 cut(s) | 61, 310 |
| HpyCH4III | ACNGT | 2 cut(s) | 55, 395 |
| HpyCH4IV | ACGT | 3 cut(s) | 62, 115, 234 |
| HpyCH4V | TGCA | 8 cut(s) | 30, 42, 50, 80, 170, 202, 208, 524 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 27, 550 |
| HpyF3I | CTNAG | 6 cut(s) | 17, 152, 338, 363, 383, 494 |
| HpySE526I | ACGT | 3 cut(s) | 62, 115, 234 |
| Hsp92II | CATG | 5 cut(s) | 140, 276, 458, 528, 587 |
| KpnI | GGTACC | 1 cut(s) | 269 |
| Kzo9I | GATC | 5 cut(s) | 36, 70, 319, 343, 580 |
| LmnI | GCTCC | 2 cut(s) | 458, 571 |
| LweI | GCATC | 2 cut(s) | 37, 229 |
| MabI | ACCWGGT | 1 cut(s) | 470 |
| MaeI | CTAG | 3 cut(s) | 219, 261, 303 |
| MaeII | ACGT | 3 cut(s) | 62, 115, 234 |
| MaeIII | GTNAC | 1 cut(s) | 431 |
| MalI | GATC | 5 cut(s) | 38, 72, 321, 345, 582 |
| MbiI | CCGCTC | 1 cut(s) | 389 |
| MboI | GATC | 5 cut(s) | 36, 70, 319, 343, 580 |
| MboII | GAAGA | 2 cut(s) | 379, 584 |
| MflI | RGATCY | 3 cut(s) | 36, 70, 343 |
| MhlI | GDGCHC | 3 cut(s) | 82, 204, 218 |
| MlsI | TGGCCA | 2 cut(s) | 162, 467 |
| MluCI | AATT | 2 cut(s) | 25, 478 |
| MluNI | TGGCCA | 2 cut(s) | 162, 467 |
| MmeI | TCCRAC | 1 cut(s) | 232 |
| MnlI | CCTC | 3 cut(s) | 390, 398, 600 |
| Mox20I | TGGCCA | 2 cut(s) | 162, 467 |
| MscI | TGGCCA | 2 cut(s) | 162, 467 |
| MslI | CAYNNNNRTG | 2 cut(s) | 237, 523 |
| Msp20I | TGGCCA | 2 cut(s) | 162, 467 |
| MspA1I | CMGCKG | 1 cut(s) | 21 |
| MspI | CCGG | 2 cut(s) | 285, 309 |
| MspR9I | CCNGG | 3 cut(s) | 286, 310, 472 |
| Mva1269I | GAATGC | 1 cut(s) | 544 |
| MvaI | CCWGG | 1 cut(s) | 472 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 27, 550 |
| NciI | CCSGG | 2 cut(s) | 286, 310 |
| NcoI | CCATGG | 1 cut(s) | 454 |
| NdeII | GATC | 5 cut(s) | 36, 70, 319, 343, 580 |
| NlaIII | CATG | 5 cut(s) | 140, 276, 458, 528, 587 |
| NlaIV | GGNNCC | 3 cut(s) | 267, 378, 452 |
| NmuCI | GTSAC | 1 cut(s) | 431 |
| PaqCI | CACCTGC | 2 cut(s) | 213, 529 |
| PctI | GAATGC | 1 cut(s) | 544 |
| PfeI | GAWTC | 4 cut(s) | 257, 279, 359, 575 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 474 |
| PmaCI | CACGTG | 1 cut(s) | 235 |
| PmlI | CACGTG | 1 cut(s) | 235 |
| Ppu21I | YACGTR | 2 cut(s) | 116, 235 |
| Psp1406I | AACGTT | 1 cut(s) | 62 |
| Psp6I | CCWGG | 1 cut(s) | 470 |
| PspCI | CACGTG | 1 cut(s) | 235 |
| PspGI | CCWGG | 1 cut(s) | 470 |
| PspN4I | GGNNCC | 3 cut(s) | 267, 378, 452 |
| PspPI | GGNCC | 2 cut(s) | 377, 391 |
| PstI | CTGCAG | 2 cut(s) | 172, 210 |
| PsuI | RGATCY | 3 cut(s) | 36, 70, 343 |
| PvuII | CAGCTG | 1 cut(s) | 21 |
| RsaI | GTAC | 3 cut(s) | 267, 307, 517 |
| RsaNI | GTAC | 3 cut(s) | 266, 306, 516 |
| RseI | CAYNNNNRTG | 2 cut(s) | 237, 523 |
| Rsr2I | CGGWCCG | 1 cut(s) | 391 |
| RsrII | CGGWCCG | 1 cut(s) | 391 |
| Sau3AI | GATC | 5 cut(s) | 36, 70, 319, 343, 580 |
| Sau96I | GGNCC | 2 cut(s) | 377, 391 |
| ScrFI | CCNGG | 3 cut(s) | 286, 310, 472 |
| SduI | GDGCHC | 3 cut(s) | 82, 204, 218 |
| SexAI | ACCWGGT | 1 cut(s) | 470 |
| SfaNI | GCATC | 2 cut(s) | 37, 229 |
| SfcI | CTRYAG | 2 cut(s) | 168, 206 |
| SinI | GGWCC | 1 cut(s) | 391 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 237, 523 |
| Sse9I | AATT | 2 cut(s) | 25, 478 |
| SsiI | CCGC | 2 cut(s) | 374, 389 |
| SspMI | CTAG | 3 cut(s) | 219, 261, 303 |
| StyD4I | CCNGG | 3 cut(s) | 284, 308, 470 |
| StyI | CCWWGG | 1 cut(s) | 454 |
| TaaI | ACNGT | 2 cut(s) | 55, 395 |
| TaiI | ACGT | 3 cut(s) | 65, 118, 237 |
| TaqI | TCGA | 2 cut(s) | 357, 531 |
| TasI | AATT | 2 cut(s) | 25, 478 |
| TatI | WGTACW | 1 cut(s) | 515 |
| TfiI | GAWTC | 4 cut(s) | 257, 279, 359, 575 |
| TscAI | CASTG | 1 cut(s) | 153 |
| TseFI | GTSAC | 1 cut(s) | 431 |
| Tsp45I | GTSAC | 1 cut(s) | 431 |
| TspGWI | ACGGA | 1 cut(s) | 558 |
| TspRI | CASTG | 1 cut(s) | 153 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 474 |
| VneI | GTGCAC | 2 cut(s) | 78, 200 |
| VpaK11BI | GGWCC | 1 cut(s) | 391 |
| XapI | RAATTY | 1 cut(s) | 478 |
| XspI | CTAG | 3 cut(s) | 219, 261, 303 |