Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Forward (+)

19934509 .. 19935412

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0218400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAACAGCACGAGTGACACGAGTGGTTTTCTCGGCTCTAACAACATCGGCGGATTTGGCTATGGCATTGGTGTATCAGTTGGCATCCTTCTTCTCATCACAACCATCACCCTTGCTTCCTACTTCTGCACCAGAACTTCGCCACCAACACACCCTGCAACGCCGAGGATTAACGCCCACAACCCTCCTGACCTGCAAAGCTTTGTTGTAGATATAGGACTCGATGACAACACTATCAAGAGCTACCCGAAGATGCTCTACTCCGAGGCCAAGCTGCAGAAGACAGGCTCCACTGCTTCCTGCTGCTCTATATGTCTAGCAGATTACAAGGCCACTGATACACTCCGGTTACTTCCAGACTGTGAACACCTCTTTCATCTCAAGTGTGTTGATCCATGGTTGCGGCTTCATCCTACCTGTCCGGTCTGCAGAACATCTCCGCTTCCAACGCCTCTGTCGACTCCTCTGGCTGAGGTGGTGCCATTGGCAAGCAGAAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

167

Amino Acids

18.04

Weight (kDa)

6.93

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	99 - 144	8.2e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	101 - 144	1e-12	Ring finger domain
zf-RING_11	PF17123	102 - 130	8.2e-10	RING-like zinc finger
zf-C3HC4	PF00097	102 - 143	1.9e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	102 - 143	6.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	458
AciI	CCGC	3 cut(s)	51, 403, 440
AclWI	GGATC	1 cut(s)	386
AluBI	AGCT	3 cut(s)	201, 243, 274
AluI	AGCT	3 cut(s)	201, 243, 274
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	267, 330
ApeKI	GCWGC	2 cut(s)	274, 303
AsuHPI	GGTGA	1 cut(s)	100
BanI	GGYRCC	1 cut(s)	478
BarI	GAAGNNNNNNTAC	2 cut(s)	242, 274
BauI	CACGAG	2 cut(s)	10, 19
BbsI	GAAGAC	1 cut(s)	287
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	261, 290
BccI	CCATC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	2 cut(s)	275, 427
BfuAI	ACCTGC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	275, 304, 404
BlsI	GCNGC	3 cut(s)	276, 305, 405
BmiI	GGNNCC	2 cut(s)	289, 480
BmsI	GCATC	2 cut(s)	93, 243
BpiI	GAAGAC	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	365
BsaJI	CCNNGG	3 cut(s)	164, 264, 395
BsaWI	WCCGGW	2 cut(s)	345, 421
BseDI	CCNNGG	3 cut(s)	164, 264, 395
BseGI	GGATG	2 cut(s)	84, 409
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	261, 290
BsgI	GTGCAG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	269, 332
BshNI	GGYRCC	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	346, 422
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	269, 332
Bsp143I	GATC	1 cut(s)	391
Bsp19I	CCATGG	1 cut(s)	395
BspACI	CCGC	3 cut(s)	51, 403, 440
BspANI	GGCC	2 cut(s)	269, 332
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	289, 480
BspMAI	CTGCAG	2 cut(s)	279, 431
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	478
BssECI	CCNNGG	3 cut(s)	164, 264, 395
BssMI	GATC	1 cut(s)	391
BssSI	CACGAG	2 cut(s)	10, 19
BssT1I	CCWWGG	1 cut(s)	395
Bst2BI	CACGAG	2 cut(s)	10, 19
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	1 cut(s)	471
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	84, 409
BstKTI	GATC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	391
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 448
BstSFI	CTRYAG	2 cut(s)	275, 427
BstV1I	GCAGC	2 cut(s)	261, 290
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	269, 332
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	84, 409
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	291, 333
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	490
CviAII	CATG	1 cut(s)	396
DdeI	CTNAG	1 cut(s)	471
DpnI	GATC	1 cut(s)	393
DpnII	GATC	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	395
EcoT14I	CCWWGG	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	1 cut(s)	399
FaiI	YATR	5 cut(s)	63, 215, 311, 313, 397
FatI	CATG	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	458
Fnu4HI	GCNGC	3 cut(s)	275, 304, 404
FokI	GGATG	2 cut(s)	71, 396
Fsp4HI	GCNGC	3 cut(s)	275, 304, 404
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	3 cut(s)	275, 304, 404
HaeIII	GGCC	2 cut(s)	269, 332
HapII	CCGG	2 cut(s)	346, 422
Hin1II	CATG	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	2 cut(s)	219, 460
HpaII	CCGG	2 cut(s)	346, 422
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	2 cut(s)	365, 459
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	3 cut(s)	188, 238, 356
Hpy8I	GTNNAC	2 cut(s)	365, 459
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	5 cut(s)	129, 158, 196, 277, 429
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 448
HpyF3I	CTNAG	1 cut(s)	471
Hsp92II	CATG	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	391
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	261, 290
LweI	GCATC	2 cut(s)	93, 243
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	14, 348
MalI	GATC	1 cut(s)	393
MboI	GATC	1 cut(s)	391
MboII	GAAGA	3 cut(s)	83, 262, 292
MlyI	GAGTC	2 cut(s)	213, 454
MmeI	TCCRAC	1 cut(s)	470
MnlI	CCTC	7 cut(s)	159, 195, 259, 380, 462, 466, 474
MseI	TTAA	1 cut(s)	171
MspI	CCGG	2 cut(s)	346, 422
MwoI	GCNNNNNNNGC	2 cut(s)	57, 448
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	399
NlaIV	GGNNCC	2 cut(s)	289, 480
NmeAIII	GCCGAG	2 cut(s)	12, 189
NmuCI	GTSAC	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 455
PkrI	GCNGC	3 cut(s)	276, 305, 405
PleI	GAGTC	2 cut(s)	213, 454
PpsI	GAGTC	2 cut(s)	213, 454
PspN4I	GGNNCC	2 cut(s)	289, 480
PstI	CTGCAG	2 cut(s)	279, 431
SalI	GTCGAC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	275, 304, 404
Sau3AI	GATC	1 cut(s)	391
SchI	GAGTC	2 cut(s)	213, 454
SetI	ASST	7 cut(s)	195, 203, 245, 276, 372, 419, 477
SfaNI	GCATC	2 cut(s)	93, 243
SfcI	CTRYAG	2 cut(s)	275, 427
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SsiI	CCGC	3 cut(s)	51, 403, 440
SspMI	CTAG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	2 cut(s)	222, 458
TauI	GCSGC	1 cut(s)	406
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	2 cut(s)	298, 340
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	274, 303
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	3 cut(s)	17, 365, 398
TspRI	CASTG	2 cut(s)	298, 340
XmiI	GTMKAC	1 cut(s)	458
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.