BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 794, 968 |
| AciI | CCGC | 3 cut(s) | 241, 349, 1075 |
| AclI | AACGTT | 1 cut(s) | 562 |
| AclWI | GGATC | 3 cut(s) | 187, 1268, 1381 |
| AcsI | RAATTY | 4 cut(s) | 275, 646, 856, 1301 |
| AfaI | GTAC | 3 cut(s) | 620, 882, 918 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 441, 920, 1081 |
| AflIII | ACRYGT | 1 cut(s) | 1361 |
| AgsI | TTSAA | 8 cut(s) | 89, 250, 368, 379, 397, 962, 986, 1390 |
| AhlI | ACTAGT | 1 cut(s) | 1087 |
| AjiI | CACGTC | 1 cut(s) | 95 |
| AjnI | CCWGG | 3 cut(s) | 844, 971, 1077 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 248, 280 |
| AluBI | AGCT | 5 cut(s) | 152, 776, 1019, 1144, 1283 |
| AluI | AGCT | 5 cut(s) | 152, 776, 1019, 1144, 1283 |
| AlwI | GGATC | 3 cut(s) | 187, 1268, 1381 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1283 |
| Ama87I | CYCGRG | 1 cut(s) | 168 |
| AoxI | GGCC | 4 cut(s) | 345, 467, 842, 1072 |
| ApeKI | GCWGC | 3 cut(s) | 401, 613, 1141 |
| ApoI | RAATTY | 4 cut(s) | 275, 646, 856, 1301 |
| AseI | ATTAAT | 1 cut(s) | 660 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 275, 858 |
| AspLEI | GCGC | 1 cut(s) | 181 |
| AspS9I | GGNCC | 4 cut(s) | 346, 468, 842, 924 |
| AsuC2I | CCSGG | 1 cut(s) | 885 |
| AsuHPI | GGTGA | 2 cut(s) | 371, 884 |
| AvaI | CYCGRG | 1 cut(s) | 168 |
| AvaII | GGWCC | 1 cut(s) | 924 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1407, 1440 |
| BanI | GGYRCC | 2 cut(s) | 794, 968 |
| BbsI | GAAGAC | 1 cut(s) | 415 |
| BbvI | GCAGC | 3 cut(s) | 388, 625, 1153 |
| BccI | CCATC | 4 cut(s) | 719, 959, 1195, 1364 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 242, 276, 1420, 1454 |
| BciT130I | CCWGG | 3 cut(s) | 846, 973, 1079 |
| BclI | TGATCA | 1 cut(s) | 1108 |
| BcnI | CCSGG | 1 cut(s) | 885 |
| BcuI | ACTAGT | 1 cut(s) | 1087 |
| BfaI | CTAG | 2 cut(s) | 1088, 1167 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BisI | GCNGC | 5 cut(s) | 242, 402, 614, 1075, 1142 |
| BlsI | GCNGC | 5 cut(s) | 243, 403, 615, 1076, 1143 |
| Bme1390I | CCNGG | 4 cut(s) | 846, 885, 973, 1079 |
| Bme18I | GGWCC | 1 cut(s) | 924 |
| BmeT110I | CYCGRG | 1 cut(s) | 168 |
| BmgBI | CACGTC | 1 cut(s) | 95 |
| BmgT120I | GGNCC | 4 cut(s) | 346, 468, 842, 924 |
| BmiI | GGNNCC | 6 cut(s) | 470, 597, 796, 925, 970, 1224 |
| BmrFI | CCNGG | 4 cut(s) | 846, 885, 973, 1079 |
| BmsI | GCATC | 8 cut(s) | 28, 55, 520, 571, 642, 865, 1128, 1398 |
| BpiI | GAAGAC | 1 cut(s) | 415 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 7, 39, 1289, 1321 |
| BpmI | CTGGAG | 2 cut(s) | 614, 1166 |
| BpuMI | CCSGG | 1 cut(s) | 885 |
| Bsa29I | ATCGAT | 1 cut(s) | 1269 |
| BsaBI | GATNNNNATC | 2 cut(s) | 132, 1265 |
| BsaJI | CCNNGG | 3 cut(s) | 972, 1069, 1078 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 441, 920, 1081 |
| Bse1I | ACTGG | 3 cut(s) | 9, 914, 1461 |
| Bse8I | GATNNNNATC | 2 cut(s) | 132, 1265 |
| BseBI | CCWGG | 3 cut(s) | 846, 973, 1079 |
| BseCI | ATCGAT | 1 cut(s) | 1269 |
| BseDI | CCNNGG | 3 cut(s) | 972, 1069, 1078 |
| BseJI | GATNNNNATC | 2 cut(s) | 132, 1265 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 441, 920, 1081 |
| BseMII | CTCAG | 2 cut(s) | 807, 1203 |
| BseNI | ACTGG | 3 cut(s) | 9, 914, 1461 |
| BseXI | GCAGC | 3 cut(s) | 388, 625, 1153 |
| BshFI | GGCC | 4 cut(s) | 347, 469, 844, 1074 |
| BshNI | GGYRCC | 2 cut(s) | 794, 968 |
| BshVI | ATCGAT | 1 cut(s) | 1269 |
| BsiHKCI | CYCGRG | 1 cut(s) | 168 |
| BsiSI | CCGG | 1 cut(s) | 884 |
| BslFI | GGGAC | 1 cut(s) | 937 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 441, 920, 1081 |
| BsmFI | GGGAC | 1 cut(s) | 937 |
| BsmI | GAATGC | 1 cut(s) | 1443 |
| BsnI | GGCC | 4 cut(s) | 347, 469, 844, 1074 |
| BsoBI | CYCGRG | 1 cut(s) | 168 |
| Bsp143I | GATC | 8 cut(s) | 142, 192, 361, 568, 1108, 1260, 1266, 1373 |
| BspACI | CCGC | 3 cut(s) | 241, 349, 1075 |
| BspANI | GGCC | 4 cut(s) | 347, 469, 844, 1074 |
| BspCNI | CTCAG | 2 cut(s) | 808, 1204 |
| BspDI | ATCGAT | 1 cut(s) | 1269 |
| BspLI | GGNNCC | 6 cut(s) | 470, 597, 796, 925, 970, 1224 |
| BspMAI | CTGCAG | 1 cut(s) | 406 |
| BspPI | GGATC | 3 cut(s) | 187, 1268, 1381 |
| BspT107I | GGYRCC | 2 cut(s) | 794, 968 |
| BsrI | ACTGG | 3 cut(s) | 9, 914, 1461 |
| BssECI | CCNNGG | 3 cut(s) | 972, 1069, 1078 |
| BssMI | GATC | 8 cut(s) | 142, 192, 361, 568, 1108, 1260, 1266, 1373 |
| BssT1I | CCWWGG | 1 cut(s) | 1069 |
| Bst2UI | CCWGG | 3 cut(s) | 846, 973, 1079 |
| Bst4CI | ACNGT | 5 cut(s) | 125, 220, 503, 681, 1039 |
| Bst6I | CTCTTC | 1 cut(s) | 183 |
| BstC8I | GCNNGC | 2 cut(s) | 349, 1227 |
| BstDEI | CTNAG | 2 cut(s) | 816, 1212 |
| BstHHI | GCGC | 1 cut(s) | 181 |
| BstKTI | GATC | 8 cut(s) | 145, 195, 364, 571, 1111, 1263, 1269, 1376 |
| BstMBI | GATC | 8 cut(s) | 142, 192, 361, 568, 1108, 1260, 1266, 1373 |
| BstNI | CCWGG | 3 cut(s) | 846, 973, 1079 |
| BstNSI | RCATGY | 2 cut(s) | 940, 1365 |
| BstSCI | CCNGG | 4 cut(s) | 844, 883, 971, 1077 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstV1I | GCAGC | 3 cut(s) | 388, 625, 1153 |
| BstV2I | GAAGAC | 1 cut(s) | 415 |
| BstX2I | RGATCY | 2 cut(s) | 192, 1373 |
| BstYI | RGATCY | 2 cut(s) | 192, 1373 |
| Bsu15I | ATCGAT | 1 cut(s) | 1269 |
| BsuRI | GGCC | 4 cut(s) | 347, 469, 844, 1074 |
| BsuTUI | ATCGAT | 1 cut(s) | 1269 |
| BtrI | CACGTC | 1 cut(s) | 95 |
| BtsI | GCAGTG | 1 cut(s) | 536 |
| BtsIMutI | CAGTG | 5 cut(s) | 130, 216, 536, 950, 1454 |
| Cac8I | GCNNGC | 2 cut(s) | 349, 1227 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1283 |
| CfoI | GCGC | 1 cut(s) | 181 |
| Cfr13I | GGNCC | 4 cut(s) | 346, 468, 842, 924 |
| ClaI | ATCGAT | 1 cut(s) | 1269 |
| Csp6I | GTAC | 3 cut(s) | 619, 881, 917 |
| CviAII | CATG | 7 cut(s) | 427, 436, 473, 518, 551, 937, 1362 |
| CviQI | GTAC | 3 cut(s) | 619, 881, 917 |
| DdeI | CTNAG | 2 cut(s) | 816, 1212 |
| DpnI | GATC | 8 cut(s) | 144, 194, 363, 570, 1110, 1262, 1268, 1375 |
| DpnII | GATC | 8 cut(s) | 142, 192, 361, 568, 1108, 1260, 1266, 1373 |
| DraI | TTTAAA | 2 cut(s) | 507, 1236 |
| Eam1104I | CTCTTC | 1 cut(s) | 183 |
| EarI | CTCTTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 1 cut(s) | 1069 |
| Eco47I | GGWCC | 1 cut(s) | 924 |
| Eco88I | CYCGRG | 1 cut(s) | 168 |
| EcoO109I | RGGNCCY | 2 cut(s) | 842, 924 |
| EcoRII | CCWGG | 3 cut(s) | 844, 971, 1077 |
| EcoT14I | CCWWGG | 1 cut(s) | 1069 |
| ErhI | CCWWGG | 1 cut(s) | 1069 |
| FaeI | CATG | 7 cut(s) | 430, 439, 476, 521, 554, 940, 1365 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 348, 380 |
| FaqI | GGGAC | 1 cut(s) | 937 |
| FatI | CATG | 7 cut(s) | 426, 435, 472, 517, 550, 936, 1361 |
| FauI | CCCGC | 1 cut(s) | 356 |
| FbaI | TGATCA | 1 cut(s) | 1108 |
| Fnu4HI | GCNGC | 5 cut(s) | 242, 402, 614, 1075, 1142 |
| Fsp4HI | GCNGC | 5 cut(s) | 242, 402, 614, 1075, 1142 |
| FspBI | CTAG | 2 cut(s) | 1088, 1167 |
| GlaI | GCGC | 1 cut(s) | 180 |
| GluI | GCNGC | 5 cut(s) | 242, 402, 614, 1075, 1142 |
| GsuI | CTGGAG | 2 cut(s) | 614, 1166 |
| HaeIII | GGCC | 4 cut(s) | 347, 469, 844, 1074 |
| HapII | CCGG | 1 cut(s) | 884 |
| HhaI | GCGC | 1 cut(s) | 181 |
| Hin1II | CATG | 7 cut(s) | 430, 439, 476, 521, 554, 940, 1365 |
| Hin6I | GCGC | 1 cut(s) | 179 |
| HinP1I | GCGC | 1 cut(s) | 179 |
| HincII | GTYRAC | 2 cut(s) | 1048, 1428 |
| HindII | GTYRAC | 2 cut(s) | 1048, 1428 |
| HinfI | GANTC | 2 cut(s) | 52, 1205 |
| HpaII | CCGG | 1 cut(s) | 884 |
| HphI | GGTGA | 2 cut(s) | 371, 884 |
| Hpy166II | GTNNAC | 4 cut(s) | 73, 684, 1048, 1428 |
| Hpy188I | TCNGA | 5 cut(s) | 105, 864, 1113, 1260, 1369 |
| Hpy188III | TCNNGA | 9 cut(s) | 146, 168, 365, 389, 593, 962, 1001, 1167, 1264 |
| Hpy8I | GTNNAC | 4 cut(s) | 73, 684, 1048, 1428 |
| Hpy99I | CGWCG | 1 cut(s) | 99 |
| HpyAV | CCTTC | 5 cut(s) | 226, 391, 980, 1239, 1470 |
| HpyCH4III | ACNGT | 5 cut(s) | 125, 220, 503, 681, 1039 |
| HpyCH4IV | ACGT | 2 cut(s) | 94, 562 |
| HpyF3I | CTNAG | 2 cut(s) | 816, 1212 |
| HpySE526I | ACGT | 2 cut(s) | 94, 562 |
| Hsp92II | CATG | 7 cut(s) | 430, 439, 476, 521, 554, 940, 1365 |
| HspAI | GCGC | 1 cut(s) | 179 |
| Ksp22I | TGATCA | 1 cut(s) | 1108 |
| Kzo9I | GATC | 8 cut(s) | 142, 192, 361, 568, 1108, 1260, 1266, 1373 |
| LmnI | GCTCC | 2 cut(s) | 595, 1222 |
| Lsp1109I | GCAGC | 3 cut(s) | 388, 625, 1153 |
| LweI | GCATC | 8 cut(s) | 28, 55, 520, 571, 642, 865, 1128, 1398 |
| MaeI | CTAG | 2 cut(s) | 1088, 1167 |
| MaeII | ACGT | 2 cut(s) | 94, 562 |
| MaeIII | GTNAC | 3 cut(s) | 214, 1012, 1127 |
| MalI | GATC | 8 cut(s) | 144, 194, 363, 570, 1110, 1262, 1268, 1375 |
| MboI | GATC | 8 cut(s) | 142, 192, 361, 568, 1108, 1260, 1266, 1373 |
| MfeI | CAATTG | 1 cut(s) | 297 |
| MflI | RGATCY | 2 cut(s) | 192, 1373 |
| MlyI | GAGTC | 1 cut(s) | 61 |
| MmeI | TCCRAC | 1 cut(s) | 522 |
| MnlI | CCTC | 8 cut(s) | 808, 816, 838, 881, 937, 970, 1086, 1163 |
| MroXI | GAANNNNTTC | 2 cut(s) | 275, 858 |
| MseI | TTAA | 8 cut(s) | 32, 113, 335, 383, 506, 660, 1122, 1235 |
| MslI | CAYNNNNRTG | 2 cut(s) | 516, 1058 |
| MspA1I | CMGCKG | 2 cut(s) | 1019, 1144 |
| MspI | CCGG | 1 cut(s) | 884 |
| MspR9I | CCNGG | 4 cut(s) | 846, 885, 973, 1079 |
| MunI | CAATTG | 1 cut(s) | 297 |
| Mva1269I | GAATGC | 1 cut(s) | 1443 |
| MvaI | CCWGG | 3 cut(s) | 846, 973, 1079 |
| NciI | CCSGG | 1 cut(s) | 885 |
| NdeII | GATC | 8 cut(s) | 142, 192, 361, 568, 1108, 1260, 1266, 1373 |
| NlaIII | CATG | 7 cut(s) | 430, 439, 476, 521, 554, 940, 1365 |
| NlaIV | GGNNCC | 6 cut(s) | 470, 597, 796, 925, 970, 1224 |
| NmuCI | GTSAC | 2 cut(s) | 214, 1127 |
| NspI | RCATGY | 2 cut(s) | 940, 1365 |
| PciI | ACATGT | 1 cut(s) | 1361 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 568 |
| PctI | GAATGC | 1 cut(s) | 1443 |
| PdmI | GAANNNNTTC | 2 cut(s) | 275, 858 |
| PfeI | GAWTC | 1 cut(s) | 1205 |
| PkrI | GCNGC | 5 cut(s) | 243, 403, 615, 1076, 1143 |
| PleI | GAGTC | 1 cut(s) | 60 |
| PpsI | GAGTC | 1 cut(s) | 60 |
| PpuMI | RGGWCCY | 1 cut(s) | 924 |
| PscI | ACATGT | 1 cut(s) | 1361 |
| PshBI | ATTAAT | 1 cut(s) | 660 |
| Psp1406I | AACGTT | 1 cut(s) | 562 |
| Psp5II | RGGWCCY | 1 cut(s) | 924 |
| Psp6I | CCWGG | 3 cut(s) | 844, 971, 1077 |
| PspGI | CCWGG | 3 cut(s) | 844, 971, 1077 |
| PspN4I | GGNNCC | 6 cut(s) | 470, 597, 796, 925, 970, 1224 |
| PspPI | GGNCC | 4 cut(s) | 346, 468, 842, 924 |
| PspPPI | RGGWCCY | 1 cut(s) | 924 |
| PstI | CTGCAG | 1 cut(s) | 406 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1283 |
| PsuI | RGATCY | 2 cut(s) | 192, 1373 |
| PvuII | CAGCTG | 2 cut(s) | 1019, 1144 |
| RsaI | GTAC | 3 cut(s) | 620, 882, 918 |
| RsaNI | GTAC | 3 cut(s) | 619, 881, 917 |
| RseI | CAYNNNNRTG | 2 cut(s) | 516, 1058 |
| SaqAI | TTAA | 8 cut(s) | 32, 113, 335, 383, 506, 660, 1122, 1235 |
| SatI | GCNGC | 5 cut(s) | 242, 402, 614, 1075, 1142 |
| Sau3AI | GATC | 8 cut(s) | 142, 192, 361, 568, 1108, 1260, 1266, 1373 |
| Sau96I | GGNCC | 4 cut(s) | 346, 468, 842, 924 |
| SchI | GAGTC | 1 cut(s) | 61 |
| ScrFI | CCNGG | 4 cut(s) | 846, 885, 973, 1079 |
| SfaNI | GCATC | 8 cut(s) | 28, 55, 520, 571, 642, 865, 1128, 1398 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| SinI | GGWCC | 1 cut(s) | 924 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 516, 1058 |
| SpeI | ACTAGT | 1 cut(s) | 1087 |
| SsiI | CCGC | 3 cut(s) | 241, 349, 1075 |
| SspMI | CTAG | 2 cut(s) | 1088, 1167 |
| StyD4I | CCNGG | 4 cut(s) | 844, 883, 971, 1077 |
| StyI | CCWWGG | 1 cut(s) | 1069 |
| TaaI | ACNGT | 5 cut(s) | 125, 220, 503, 681, 1039 |
| TaiI | ACGT | 2 cut(s) | 97, 565 |
| TaqI | TCGA | 2 cut(s) | 1192, 1269 |
| TatI | WGTACW | 1 cut(s) | 618 |
| TauI | GCSGC | 2 cut(s) | 244, 1077 |
| TfiI | GAWTC | 1 cut(s) | 1205 |
| Tru1I | TTAA | 8 cut(s) | 32, 113, 335, 383, 506, 660, 1122, 1235 |
| Tru9I | TTAA | 8 cut(s) | 32, 113, 335, 383, 506, 660, 1122, 1235 |
| TscAI | CASTG | 5 cut(s) | 130, 223, 536, 950, 1461 |
| TseFI | GTSAC | 2 cut(s) | 214, 1127 |
| TseI | GCWGC | 3 cut(s) | 401, 613, 1141 |
| Tsp45I | GTSAC | 2 cut(s) | 214, 1127 |
| TspDTI | ATGAA | 7 cut(s) | 9, 122, 330, 415, 537, 567, 779 |
| TspGWI | ACGGA | 1 cut(s) | 170 |
| TspRI | CASTG | 5 cut(s) | 130, 223, 536, 950, 1461 |
| VpaK11BI | GGWCC | 1 cut(s) | 924 |
| VspI | ATTAAT | 1 cut(s) | 660 |
| XapI | RAATTY | 4 cut(s) | 275, 646, 856, 1301 |
| XbaI | TCTAGA | 1 cut(s) | 1166 |
| XceI | RCATGY | 2 cut(s) | 940, 1365 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 203 |
| XmnI | GAANNNNTTC | 2 cut(s) | 275, 858 |
| XspI | CTAG | 2 cut(s) | 1088, 1167 |