Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000322

Physical Location & Seq

Genomic Coordinates Reverse (-)

28727657 .. 28751095

Gene Structure 23439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0285500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1875 bp

ATGGTTGATTATGTTCAAACTGCGAACAATAGACCTGGTTTTGTTCCAGTTTCTGATTCTAGAATGTCTGCACCCCTTGTTCTTGTTATAGACGAGTGTTTAGATGAACCACATCTCTGGCATTTACAGAGCTCCTTACATGCCTTTGTCGATTCACTTCCCCCTACAACGAGAATTGGAATAGTACTGTATGGTCGCACAGTATCAGTTTATGATTTTTCAGAGGAATCAGTTGCATCTGCTGATGTGCTTCCAGGCGACAAATCACCATGCCAGGAGTCCTTGAAGGCATTGATATATGGAACCGGTATATATTTGTCTCCAATGCATGCTTCACTGCCTGTAGCACATGCCATATTCTCATCATTAAGGCCGTATAAATTGAACATTCCAGAAGCTTCTAGAGACCGGTGCCTTGGCACAGCAGTTGAGGTTGCTCTTGCTATAATTCAAGGCCCATCAGCAGACATTTCTCGAGGGGTAATAAAAAGGTCAGGAGGTAATAGCAGAGTCATAGTTTGTGCTGGTGGACCCAATACTTATGGTCCTGGATCTGTTCCTCATTCTTTCAGTCACCCAAATTATGCTCACTTGGAAAAGACTGCATTGAAATGGATGGAGCATCTGGGTCAAGAGGCACACCGACACAATACAGTAGTTGATATTCTTTGTGCTGGGCAATGCCCTGTAAGGGTTCCTGTTTTGCAGCCTCTTGCAAAAGCTTCTGGGGGCGTTTTTGTTCTCCATGATGACTTTGGTGAAGCCTTTGGAGTGAACTTGCAAAGGGCATCCACCAGGGCAGCAGGCTCCCGTGGGTTCTTGGCAATTCGCTGTTCAGATGATATTCTCATAACCCAAGTTGTGGGTCCTGGCGAAGAGGCACATGTAGACACTCATGAAACGTTCAAAAATGACACATCTCTTTACATACAAATGCCAAGTGTTGAAGAAACACAGAGCTTCTTACTCTCCTTGGAAAATAAGAGGGACATTAGGACTGAGTATGTGTATTTCCAGTTTACAACTCAGTTTCTGAATGTTTATCAAGCTGATATATCAAGAGTAATAACTGTTAGATTGCCAACAGTTGATAGTGTTTCAGCATATCTTGAGAGCGTTCAAGAGGAAGTGGCAGCAGTTCTTATTGCAAAGAGGACTCTCTTGCGAGCCAAAAACAGTTCTGATGCAATTGATATGCGATCAACAATAGATGAAAGAATTAAAGACATTGCTTTAAAATATGGTTCTCAAGTACCAAAATCAAAGCAATATCGTTTCCCAAAGGAGATGTCTTTATTACCAGAGCACCTGTTTCATCTTAGAAGGGGCCCACTTTTGGGAAACATTGTTGGCCATGAAGATGAGAGGTCTGTGTTACGGAACTTGTTTCTGAATGCATCCTTTGATCTGTCTCTGCGAATGGTTGCACCTCGTTGTCTAATGCATCGGGAAGGGGGAACTTTCGAGGAACTACCAGCTTATGACCTTGCTATGCAGTCTGATGCAGCAGTTGTACTTGATCATGGCACAGATGTCTTCATTTGGTTGGGTGCTGAACTTGCTGCTGATGAAGGGAAAAGTGCAGCTGCTTTAGCTGCGTGCAGAACATTGGCTGAAGAGCTCAGTGAACTTCGGTTTCCAGCCCCTCGGATTCTTTCCTTCAAGGAAGGAAGTTCTCAGGCTCGGTATTTTGTATCGCGGCTCATTCCTGCGCACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTTCCTCAGCTACGAACTTTGACAATAGAACAGCGCACAAAGCTGAAAAGCAGTTTTATTAGTTTTGATGATCCTAGCTTCTGTGAGTGGGTACGAAGCTTGAGAGTGGTTCCCCCAAAACCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008422 GO:0009056 GO:0009057 GO:0009251 GO:0015926 GO:0016020 GO:0016052 GO:0016787 GO:0016798 GO:0042597 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0071944 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

624

Amino Acids

69.04

Weight (kDa)

6.15

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec23_trunk	PF04811	27 - 253	1e-12	Sec23/Sec24 trunk domain
Sec23_BS	PF08033	272 - 363	1.9e-12	Sec23/Sec24 beta-sandwich domain
Sec23_helical	PF04815	376 - 472	2.2e-16	Sec23/Sec24 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000322)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0045800 Rorug01G0060200 Rorug01G0078200 Rorug01G0080300 Rorug01G0080500 Rorug01G0093600 Rorug01G0096100 Rorug01G0138500.1 Rorug01G0147900.1 Rorug01G0156300.1 Rorug01G0181600 Rorug01G0183600 Rorug01G0183600 Rorug01G0196000 Rorug01G0206200 Rorug01G0206200 Rorug01G0206300 Rorug01G0206400 Rorug01G0245700 Rorug01G0267300 Rorug01G0268000 Rorug01G0324700 Rorug01G0324800 Rorug02G0034400 Rorug02G0034500 Rorug02G0104900 Rorug02G0224800 Rorug02G0224900 Rorug02G0247400 Rorug02G0261500 Rorug02G0288300 Rorug02G0297300 Rorug02G0297400 Rorug02G0314900 Rorug02G0362700 Rorug02G0438500 Rorug02G0438600 Rorug02G0438700 Rorug02G0438800 Rorug02G0525300 Rorug02G0540100 Rorug03G0147100 Rorug03G0150900 Rorug03G0171600 Rorug03G0182000 Rorug03G0200200 Rorug03G0201100 Rorug03G0218400 Rorug03G0218700 Rorug03G0268200 Rorug03G0285500 Rorug03G0296600 Rorug03G0296700 Rorug03G0296800 Rorug03G0341800 Rorug03G0347200 Rorug03G0356300 Rorug04G0029100 Rorug04G0036300 Rorug04G0046500 Rorug04G0070100 Rorug04G0098900 Rorug04G0104400 Rorug04G0167800 Rorug04G0209300 Rorug04G0210700 Rorug04G0210800 Rorug04G0212500 Rorug05G0109400 Rorug05G0148500 Rorug05G0148800 Rorug05G0160200 Rorug05G0184600 Rorug05G0206100 Rorug05G0208500 Rorug05G0208500 Rorug05G0209500 Rorug05G0235800 Rorug05G0239200 Rorug05G0301100 Rorug05G0427000 Rorug05G0451700 Rorug05G0462300 Rorug05G0467300 Rorug05G0524100 Rorug05G0527400 Rorug05G0527500 Rorug05G0561800 Rorug05G0567700 Rorug05G0574200 Rorug06G0000900 Rorug06G0018700.1 Rorug06G0025100 Rorug06G0025200 Rorug06G0025500 Rorug06G0041300 Rorug06G0048100 Rorug06G0050800 Rorug06G0053900 Rorug06G0075200 Rorug06G0080600 Rorug06G0087500.1 Rorug06G0090000 Rorug06G0141200 Rorug06G0218300 Rorug07G0106700 Rorug07G0125500 Rorug07G0185500 Rorug07G0194000 Rorug07G0196600 Rorug07G0200600 Rorug07G0217300 Rorug07G0250300 Rorug07G0301900 Rorug07G0309100.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1713
AccB1I	GGYRCC	1 cut(s)	411
AccB7I	CCANNNNNTGG	1 cut(s)	862
AccI	GTMKAC	1 cut(s)	888
AccII	CGCG	1 cut(s)	1699
AciI	CCGC	1 cut(s)	1699
AclI	AACGTT	1 cut(s)	902
AclWI	GGATC	4 cut(s)	559, 1715, 1728, 1811
AcoI	YGGCCR	1 cut(s)	1351
AcuI	CTGAAG	1 cut(s)	1635
AfaI	GTAC	4 cut(s)	186, 1254, 1515, 1839
AfiI	CCNNNNNNNGG	4 cut(s)	691, 862, 1336, 1337
AflIII	ACRYGT	1 cut(s)	883
AgeI	ACCGGT	2 cut(s)	305, 408
AgsI	TTSAA	9 cut(s)	17, 286, 385, 452, 610, 907, 947, 1121, 1663
AjnI	CCWGG	6 cut(s)	34, 253, 273, 547, 794, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
Alw21I	GWGCWC	3 cut(s)	134, 1308, 1623
Alw26I	GTCTC	3 cut(s)	324, 399, 1416
AlwI	GGATC	4 cut(s)	559, 1715, 1728, 1811
AlwNI	CAGNNNCTG	2 cut(s)	53, 1033
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	4 cut(s)	371, 454, 1327, 1351
ApaI	GGGCCC	1 cut(s)	1331
ApeKI	GCWGC	8 cut(s)	706, 800, 1133, 1505, 1562, 1583, 1586, 1595
ArsI	GACNNNNNNTTYG	2 cut(s)	1274, 1306
AsiGI	ACCGGT	2 cut(s)	305, 408
AspLEI	GCGC	2 cut(s)	1714, 1782
AspS9I	GGNCC	6 cut(s)	455, 530, 545, 866, 1327, 1328
AsuHPI	GGTGA	3 cut(s)	258, 566, 770
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	3 cut(s)	530, 545, 866
BaeGI	GKGCMC	1 cut(s)	1331
BalI	TGGCCA	1 cut(s)	1353
BamHI	GGATCC	1 cut(s)	1720
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	3 cut(s)	134, 1331, 1623
BbsI	GAAGAC	1 cut(s)	1528
Bbv12I	GWGCWC	3 cut(s)	134, 1308, 1623
BbvCI	CCTCAGC	1 cut(s)	1752
BbvI	GCAGC	8 cut(s)	718, 812, 1145, 1517, 1549, 1573, 1582, 1595
BccI	CCATC	2 cut(s)	466, 610
BceAI	ACGGC	1 cut(s)	358
BciT130I	CCWGG	6 cut(s)	36, 255, 275, 549, 796, 870
BclI	TGATCA	1 cut(s)	1519
BcoDI	GTCTC	3 cut(s)	324, 399, 1416
BfaI	CTAG	3 cut(s)	60, 402, 1821
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	9 cut(s)	707, 801, 1134, 1506, 1563, 1584, 1587, 1596, 1700
BlsI	GCNGC	9 cut(s)	708, 802, 1135, 1507, 1564, 1585, 1588, 1597, 1701
BmcAI	AGTACT	1 cut(s)	186
Bme1390I	CCNGG	6 cut(s)	36, 255, 275, 549, 796, 870
Bme18I	GGWCC	3 cut(s)	530, 545, 866
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	6 cut(s)	455, 530, 545, 866, 1327, 1328
BmrFI	CCNGG	6 cut(s)	36, 255, 275, 549, 796, 870
BmsI	GCATC	7 cut(s)	245, 631, 797, 1174, 1406, 1453, 1492
BpiI	GAAGAC	1 cut(s)	1528
Bpu10I	CCTNAGC	1 cut(s)	1752
BpuEI	CTTGAG	3 cut(s)	1130, 1233, 1867
BsaI	GGTCTC	1 cut(s)	399
BsaJI	CCNNGG	5 cut(s)	415, 795, 811, 972, 1646
BsaWI	WCCGGW	2 cut(s)	305, 408
Bsc4I	CCNNNNNNNGG	4 cut(s)	691, 862, 1336, 1337
Bse118I	RCCGGY	2 cut(s)	305, 408
Bse1I	ACTGG	2 cut(s)	47, 1015
Bse3DI	GCAATG	2 cut(s)	686, 1227
BseBI	CCWGG	6 cut(s)	36, 255, 275, 549, 796, 870
BseDI	CCNNGG	5 cut(s)	415, 795, 811, 972, 1646
BseGI	GGATG	3 cut(s)	621, 788, 1397
BseLI	CCNNNNNNNGG	4 cut(s)	691, 862, 1336, 1337
BseMI	GCAATG	2 cut(s)	686, 1227
BseMII	CTCAG	5 cut(s)	990, 1040, 1636, 1691, 1766
BseNI	ACTGG	2 cut(s)	47, 1015
BseSI	GKGCMC	1 cut(s)	1331
BseXI	GCAGC	8 cut(s)	718, 812, 1145, 1517, 1549, 1573, 1582, 1595
BseYI	CCCAGC	1 cut(s)	674
BsgI	GTGCAG	3 cut(s)	54, 1602, 1621
Bsh1236I	CGCG	1 cut(s)	1699
BshFI	GGCC	4 cut(s)	373, 456, 1329, 1353
BshNI	GGYRCC	1 cut(s)	411
BshTI	ACCGGT	2 cut(s)	305, 408
BsiHKAI	GWGCWC	3 cut(s)	134, 1308, 1623
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	306, 409
BslFI	GGGAC	1 cut(s)	1001
BslI	CCNNNNNNNGG	4 cut(s)	691, 862, 1336, 1337
BsmAI	GTCTC	3 cut(s)	324, 399, 1416
BsmFI	GGGAC	1 cut(s)	1001
BsmI	GAATGC	1 cut(s)	1399
BsnI	GGCC	4 cut(s)	373, 456, 1329, 1353
Bso31I	GGTCTC	1 cut(s)	399
BsoBI	CYCGRG	1 cut(s)	474
Bsp120I	GGGCCC	1 cut(s)	1327
Bsp1286I	GDGCHC	4 cut(s)	134, 1308, 1331, 1623
Bsp143I	GATC	6 cut(s)	551, 1199, 1405, 1519, 1720, 1816
BspACI	CCGC	1 cut(s)	1699
BspANI	GGCC	4 cut(s)	373, 456, 1329, 1353
BspCNI	CTCAG	5 cut(s)	991, 1039, 1635, 1690, 1765
BspFNI	CGCG	1 cut(s)	1699
BspHI	TCATGA	1 cut(s)	895
BspPI	GGATC	4 cut(s)	559, 1715, 1728, 1811
BspQI	GCTCTTC	1 cut(s)	1611
BspT107I	GGYRCC	1 cut(s)	411
BspTNI	GGTCTC	1 cut(s)	399
BsrDI	GCAATG	2 cut(s)	686, 1227
BsrFI	RCCGGY	2 cut(s)	305, 408
BsrI	ACTGG	2 cut(s)	47, 1015
BssAI	RCCGGY	2 cut(s)	305, 408
BssECI	CCNNGG	5 cut(s)	415, 795, 811, 972, 1646
BssMI	GATC	6 cut(s)	551, 1199, 1405, 1519, 1720, 1816
BssT1I	CCWWGG	2 cut(s)	415, 972
Bst2UI	CCWGG	6 cut(s)	36, 255, 275, 549, 796, 870
Bst4CI	ACNGT	6 cut(s)	189, 202, 655, 1072, 1087, 1178
Bst6I	CTCTTC	2 cut(s)	870, 1611
BstC8I	GCNNGC	4 cut(s)	330, 805, 1167, 1600
BstDEI	CTNAG	6 cut(s)	999, 1026, 1319, 1622, 1677, 1752
BstDSI	CCRYGG	1 cut(s)	811
BstF5I	GGATG	3 cut(s)	621, 788, 1397
BstFNI	CGCG	1 cut(s)	1699
BstHHI	GCGC	2 cut(s)	1714, 1782
BstKTI	GATC	6 cut(s)	554, 1202, 1408, 1522, 1723, 1819
BstMAI	GTCTC	3 cut(s)	324, 399, 1416
BstMBI	GATC	6 cut(s)	551, 1199, 1405, 1519, 1720, 1816
BstMWI	GCNNNNNNNGC	4 cut(s)	1559, 1592, 1595, 1786
BstNI	CCWGG	6 cut(s)	36, 255, 275, 549, 796, 870
BstNSI	RCATGY	4 cut(s)	143, 332, 353, 887
BstSCI	CCNGG	6 cut(s)	34, 253, 273, 547, 794, 868
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	1331
BstUI	CGCG	1 cut(s)	1699
BstV1I	GCAGC	8 cut(s)	718, 812, 1145, 1517, 1549, 1573, 1582, 1595
BstV2I	GAAGAC	1 cut(s)	1528
BstX2I	RGATCY	2 cut(s)	551, 1720
BstXI	CCANNNNNNTGG	1 cut(s)	117
BstYI	RGATCY	2 cut(s)	551, 1720
BsuRI	GGCC	4 cut(s)	373, 456, 1329, 1353
BtgI	CCRYGG	1 cut(s)	811
BtsCI	GGATG	3 cut(s)	621, 788, 1397
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	2 cut(s)	335, 1630
Cac8I	GCNNGC	4 cut(s)	330, 805, 1167, 1600
CaiI	CAGNNNCTG	2 cut(s)	53, 1033
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	2 cut(s)	1714, 1782
Cfr10I	RCCGGY	2 cut(s)	305, 408
Cfr13I	GGNCC	6 cut(s)	455, 530, 545, 866, 1327, 1328
CsiI	ACCWGGT	1 cut(s)	34
Csp6I	GTAC	4 cut(s)	185, 1253, 1514, 1838
CspAI	ACCGGT	2 cut(s)	305, 408
CviAII	CATG	9 cut(s)	140, 270, 329, 350, 746, 884, 896, 1355, 1523
CviQI	GTAC	4 cut(s)	185, 1253, 1514, 1838
DdeI	CTNAG	6 cut(s)	999, 1026, 1319, 1622, 1677, 1752
DpnI	GATC	6 cut(s)	553, 1201, 1407, 1521, 1722, 1818
DpnII	GATC	6 cut(s)	551, 1199, 1405, 1519, 1720, 1816
DraI	TTTAAA	1 cut(s)	1236
EaeI	YGGCCR	1 cut(s)	1351
Eam1104I	CTCTTC	2 cut(s)	870, 1611
EarI	CTCTTC	2 cut(s)	870, 1611
Ecl136II	GAGCTC	2 cut(s)	132, 1621
Eco130I	CCWWGG	2 cut(s)	415, 972
Eco24I	GRGCYC	3 cut(s)	134, 1331, 1623
Eco31I	GGTCTC	1 cut(s)	399
Eco47I	GGWCC	3 cut(s)	530, 545, 866
Eco53kI	GAGCTC	2 cut(s)	132, 1621
Eco57I	CTGAAG	1 cut(s)	1635
Eco88I	CYCGRG	1 cut(s)	474
EcoICRI	GAGCTC	2 cut(s)	132, 1621
EcoO109I	RGGNCCY	2 cut(s)	866, 1327
EcoRII	CCWGG	6 cut(s)	34, 253, 273, 547, 794, 868
EcoT14I	CCWWGG	2 cut(s)	415, 972
EcoT22I	ATGCAT	3 cut(s)	330, 1399, 1446
EcoT38I	GRGCYC	3 cut(s)	134, 1331, 1623
ErhI	CCWWGG	2 cut(s)	415, 972
FaeI	CATG	9 cut(s)	143, 273, 332, 353, 749, 887, 899, 1358, 1526
FaqI	GGGAC	1 cut(s)	1001
FatI	CATG	9 cut(s)	139, 269, 328, 349, 745, 883, 895, 1354, 1522
FbaI	TGATCA	1 cut(s)	1519
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	9 cut(s)	707, 801, 1134, 1506, 1563, 1584, 1587, 1596, 1700
FokI	GGATG	3 cut(s)	628, 775, 1384
FriOI	GRGCYC	3 cut(s)	134, 1331, 1623
Fsp4HI	GCNGC	9 cut(s)	707, 801, 1134, 1506, 1563, 1584, 1587, 1596, 1700
FspBI	CTAG	3 cut(s)	60, 402, 1821
FspI	TGCGCA	1 cut(s)	1713
GlaI	GCGC	2 cut(s)	1713, 1781
GluI	GCNGC	9 cut(s)	707, 801, 1134, 1506, 1563, 1584, 1587, 1596, 1700
GsaI	CCCAGC	1 cut(s)	678
HaeIII	GGCC	4 cut(s)	373, 456, 1329, 1353
HapII	CCGG	2 cut(s)	306, 409
HhaI	GCGC	2 cut(s)	1714, 1782
Hin1II	CATG	9 cut(s)	143, 273, 332, 353, 749, 887, 899, 1358, 1526
Hin6I	GCGC	2 cut(s)	1712, 1780
HinP1I	GCGC	2 cut(s)	1712, 1780
HindIII	AAGCTT	3 cut(s)	396, 720, 1843
HinfI	GANTC	7 cut(s)	56, 152, 227, 278, 510, 1156, 1651
HpaII	CCGG	2 cut(s)	306, 409
HphI	GGTGA	3 cut(s)	258, 566, 770
Hpy166II	GTNNAC	5 cut(s)	530, 775, 889, 1020, 1628
Hpy188I	TCNGA	8 cut(s)	55, 223, 838, 1035, 1183, 1392, 1501, 1650
Hpy8I	GTNNAC	5 cut(s)	530, 775, 889, 1020, 1628
HpyAV	CCTTC	6 cut(s)	280, 1317, 1445, 1565, 1661, 1669
HpyCH4III	ACNGT	6 cut(s)	189, 202, 655, 1072, 1087, 1178
HpyCH4IV	ACGT	1 cut(s)	902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1559, 1592, 1595, 1786
HpyF3I	CTNAG	6 cut(s)	999, 1026, 1319, 1622, 1677, 1752
HpySE526I	ACGT	1 cut(s)	902
Hsp92II	CATG	9 cut(s)	143, 273, 332, 353, 749, 887, 899, 1358, 1526
HspAI	GCGC	2 cut(s)	1712, 1780
Ksp22I	TGATCA	1 cut(s)	1519
Kzo9I	GATC	6 cut(s)	551, 1199, 1405, 1519, 1720, 1816
LguI	GCTCTTC	1 cut(s)	1611
LmnI	GCTCC	3 cut(s)	137, 619, 812
Lsp1109I	GCAGC	8 cut(s)	718, 812, 1145, 1517, 1549, 1573, 1582, 1595
LweI	GCATC	7 cut(s)	245, 631, 797, 1174, 1406, 1453, 1492
MabI	ACCWGGT	1 cut(s)	34
MaeI	CTAG	3 cut(s)	60, 402, 1821
MaeII	ACGT	1 cut(s)	902
MaeIII	GTNAC	2 cut(s)	572, 1374
MalI	GATC	6 cut(s)	553, 1201, 1407, 1521, 1722, 1818
MboI	GATC	6 cut(s)	551, 1199, 1405, 1519, 1720, 1816
MboII	GAAGA	5 cut(s)	887, 959, 1370, 1528, 1628
MfeI	CAATTG	1 cut(s)	1188
MflI	RGATCY	2 cut(s)	551, 1720
MhlI	GDGCHC	4 cut(s)	134, 1308, 1331, 1623
MlsI	TGGCCA	1 cut(s)	1353
MluCI	AATT	7 cut(s)	174, 380, 447, 580, 825, 1188, 1218
MluNI	TGGCCA	1 cut(s)	1353
MlyI	GAGTC	3 cut(s)	287, 519, 1150
Mox20I	TGGCCA	1 cut(s)	1353
Mph1103I	ATGCAT	3 cut(s)	330, 1399, 1446
MscI	TGGCCA	1 cut(s)	1353
MseI	TTAA	3 cut(s)	368, 1221, 1235
MslI	CAYNNNNRTG	3 cut(s)	610, 932, 1359
Msp20I	TGGCCA	1 cut(s)	1353
MspA1I	CMGCKG	1 cut(s)	1586
MspI	CCGG	2 cut(s)	306, 409
MspR9I	CCNGG	6 cut(s)	36, 255, 275, 549, 796, 870
MunI	CAATTG	1 cut(s)	1188
Mva1269I	GAATGC	1 cut(s)	1399
MvaI	CCWGG	6 cut(s)	36, 255, 275, 549, 796, 870
MvnI	CGCG	1 cut(s)	1699
MwoI	GCNNNNNNNGC	4 cut(s)	1559, 1592, 1595, 1786
NdeII	GATC	6 cut(s)	551, 1199, 1405, 1519, 1720, 1816
NlaIII	CATG	9 cut(s)	143, 273, 332, 353, 749, 887, 899, 1358, 1526
NmuCI	GTSAC	1 cut(s)	572
NsbI	TGCGCA	1 cut(s)	1713
NsiI	ATGCAT	3 cut(s)	330, 1399, 1446
NspI	RCATGY	4 cut(s)	143, 332, 353, 887
PaeI	GCATGC	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	474
PagI	TCATGA	1 cut(s)	895
PciI	ACATGT	1 cut(s)	883
PciSI	GCTCTTC	1 cut(s)	1611
PctI	GAATGC	1 cut(s)	1399
PfeI	GAWTC	4 cut(s)	56, 152, 227, 1651
PflMI	CCANNNNNTGG	1 cut(s)	862
PfoI	TCCNGGA	1 cut(s)	547
PinAI	ACCGGT	2 cut(s)	305, 408
PkrI	GCNGC	9 cut(s)	708, 802, 1135, 1507, 1564, 1585, 1588, 1597, 1701
PleI	GAGTC	3 cut(s)	286, 518, 1150
PpsI	GAGTC	3 cut(s)	286, 518, 1150
PpuMI	RGGWCCY	1 cut(s)	866
PscI	ACATGT	1 cut(s)	883
Psp124BI	GAGCTC	2 cut(s)	134, 1623
Psp1406I	AACGTT	1 cut(s)	902
Psp5II	RGGWCCY	1 cut(s)	866
Psp6I	CCWGG	6 cut(s)	34, 253, 273, 547, 794, 868
PspFI	CCCAGC	1 cut(s)	674
PspGI	CCWGG	6 cut(s)	34, 253, 273, 547, 794, 868
PspOMI	GGGCCC	1 cut(s)	1327
PspPI	GGNCC	6 cut(s)	455, 530, 545, 866, 1327, 1328
PspPPI	RGGWCCY	1 cut(s)	866
PstNI	CAGNNNCTG	2 cut(s)	53, 1033
PsuI	RGATCY	2 cut(s)	551, 1720
PvuII	CAGCTG	1 cut(s)	1586
RsaI	GTAC	4 cut(s)	186, 1254, 1515, 1839
RsaNI	GTAC	4 cut(s)	185, 1253, 1514, 1838
RseI	CAYNNNNRTG	3 cut(s)	610, 932, 1359
SacI	GAGCTC	2 cut(s)	134, 1623
SapI	GCTCTTC	1 cut(s)	1611
SaqAI	TTAA	3 cut(s)	368, 1221, 1235
SatI	GCNGC	9 cut(s)	707, 801, 1134, 1506, 1563, 1584, 1587, 1596, 1700
Sau3AI	GATC	6 cut(s)	551, 1199, 1405, 1519, 1720, 1816
Sau96I	GGNCC	6 cut(s)	455, 530, 545, 866, 1327, 1328
ScaI	AGTACT	1 cut(s)	186
SchI	GAGTC	3 cut(s)	287, 519, 1150
ScrFI	CCNGG	6 cut(s)	36, 255, 275, 549, 796, 870
SduI	GDGCHC	4 cut(s)	134, 1308, 1331, 1623
SexAI	ACCWGGT	1 cut(s)	34
SfaNI	GCATC	7 cut(s)	245, 631, 797, 1174, 1406, 1453, 1492
SfcI	CTRYAG	1 cut(s)	342
Sfr274I	CTCGAG	1 cut(s)	474
SinI	GGWCC	3 cut(s)	530, 545, 866
SlaI	CTCGAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	3 cut(s)	610, 932, 1359
SmlI	CTYRAG	4 cut(s)	474, 1109, 1248, 1846
SmoI	CTYRAG	4 cut(s)	474, 1109, 1248, 1846
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	7 cut(s)	174, 380, 447, 580, 825, 1188, 1218
SsiI	CCGC	1 cut(s)	1699
SspMI	CTAG	3 cut(s)	60, 402, 1821
SstI	GAGCTC	2 cut(s)	134, 1623
StyD4I	CCNGG	6 cut(s)	34, 253, 273, 547, 794, 868
StyI	CCWWGG	2 cut(s)	415, 972
TaaI	ACNGT	6 cut(s)	189, 202, 655, 1072, 1087, 1178
TaiI	ACGT	1 cut(s)	905
TaqI	TCGA	3 cut(s)	150, 475, 1464
TasI	AATT	7 cut(s)	174, 380, 447, 580, 825, 1188, 1218
TatI	WGTACW	2 cut(s)	184, 1513
TauI	GCSGC	1 cut(s)	1702
TfiI	GAWTC	4 cut(s)	56, 152, 227, 1651
Tru1I	TTAA	3 cut(s)	368, 1221, 1235
Tru9I	TTAA	3 cut(s)	368, 1221, 1235
TscAI	CASTG	2 cut(s)	342, 1630
TseFI	GTSAC	1 cut(s)	572
TseI	GCWGC	8 cut(s)	706, 800, 1133, 1505, 1562, 1583, 1586, 1595
Tsp45I	GTSAC	1 cut(s)	572
TspDTI	ATGAA	7 cut(s)	120, 912, 1227, 1304, 1371, 1528, 1584
TspGWI	ACGGA	1 cut(s)	1393
TspRI	CASTG	2 cut(s)	342, 1630
Van91I	CCANNNNNTGG	1 cut(s)	862
VpaK11BI	GGWCC	3 cut(s)	530, 545, 866
XbaI	TCTAGA	2 cut(s)	59, 401
XceI	RCATGY	4 cut(s)	143, 332, 353, 887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XhoI	CTCGAG	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	888
XspI	CTAG	3 cut(s)	60, 402, 1821
ZrmI	AGTACT	1 cut(s)	186
Zsp2I	ATGCAT	3 cut(s)	330, 1399, 1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.